View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4528_high_3 (Length: 298)
Name: NF4528_high_3
Description: NF4528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4528_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 1493388 - 1493117
Alignment:
| Q |
11 |
cacagatacacgtcgacactgctaattccaaaaacatagaacactgacctgaacaaaacaatcatggaagaagagcctaagtgtagcaggtgctgtaaca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1493388 |
cacagatacacgtcgacactgctaattccaaaaacattgaacactgacctgaacaaaacaatcatggaagaagagcctaagtgtagcaggtgctgtaaca |
1493289 |
T |
|
| Q |
111 |
aatgtttgctgaagtttcatctcaactgcattttttactattgattcaacatttggacaagtgtttctgtaataatcaactctaagttttgttgcatgac |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1493288 |
aatgtttgctgaagtttcatctcaactgcatttttgactattgattcaacatttggacaagtgtttctgtaataatcaactctaagttttgttgcatgac |
1493189 |
T |
|
| Q |
211 |
aattagttatgagctgcaaaagaaacaggttaacaaggaaggtgaggaagctgagagaacccatttcttgga |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1493188 |
aattagttatgagctgcaaaagaaacaggttaacaaggaaggtgaggaagctgagagaacccatttcttgga |
1493117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 128 - 259
Target Start/End: Complemental strand, 1487442 - 1487313
Alignment:
| Q |
128 |
catctcaactgcattttttactattgattcaacatttggacaagtgtttctgtaataatcaactctaagttttgttgcatgacaattagttatgagctgc |
227 |
Q |
| |
|
||||| ||||| ||||| || |||||||||| || || ||| |||||||||||||| ||||| |||||||||| ||| |||||||| ||| ||||| |
|
|
| T |
1487442 |
catcttaactgtattttggaccattgattcaaaatatgaacatgtgtttctgtaatagtcaacactaagttttgatgc--gacaattatttacaagctgt |
1487345 |
T |
|
| Q |
228 |
aaaagaaacaggttaacaaggaaggtgaggaa |
259 |
Q |
| |
|
|| |||||||| |||||||||||||||||||| |
|
|
| T |
1487344 |
aagagaaacagattaacaaggaaggtgaggaa |
1487313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 39800609 - 39800538
Alignment:
| Q |
57 |
acctgaacaaaacaatcatggaagaagagcctaagtgtagcaggtgctgtaacaaatgtttgctgaagtttc |
128 |
Q |
| |
|
|||||||||||||||||||| |||||||| | ||| |||||||| | |||||||| ||||| |||| |||| |
|
|
| T |
39800609 |
acctgaacaaaacaatcatgaaagaagagacgaagggtagcaggaacagtaacaaaagtttgttgaaatttc |
39800538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 53053645 - 53053585
Alignment:
| Q |
63 |
acaaaacaatcatggaagaagagcctaagtgtagcaggtgctgtaacaaatgtttgctgaa |
123 |
Q |
| |
|
|||||||||||||||||||| || ||||| || ||||| || || ||||||||||| |||| |
|
|
| T |
53053645 |
acaaaacaatcatggaagaaaagtctaagagtggcaggagcagtgacaaatgtttgttgaa |
53053585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University