View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4528_low_4 (Length: 278)

Name: NF4528_low_4
Description: NF4528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4528_low_4
NF4528_low_4
[»] chr8 (8 HSPs)
chr8 (10-262)||(2435112-2435365)
chr8 (101-263)||(2431721-2431887)
chr8 (154-262)||(2517297-2517405)
chr8 (113-262)||(2506282-2506432)
chr8 (154-262)||(1459038-1459146)
chr8 (154-262)||(2428745-2428853)
chr8 (154-262)||(2512937-2513045)
chr8 (154-260)||(2497597-2497703)
[»] chr7 (1 HSPs)
chr7 (154-261)||(946103-946210)
[»] chr5 (1 HSPs)
chr5 (156-217)||(6742652-6742713)
[»] chr4 (1 HSPs)
chr4 (171-244)||(32259345-32259418)


Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 262
Target Start/End: Complemental strand, 2435365 - 2435112
Alignment:
Q  10 caaagatatggattgtggttagtgcaattagattcattcaaagtaatagtactttaaacagtggaataaataatcataggnnnnnnn-aggggatgttga 108  Q
    |||||||||||||||| ||||||||||||||| | | ||||| |||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  2435365 caaagatatggattgttgttagtgcaattagacttagtcaaaataatagtactttaaacagtggaataaataatcataggttttttttaggggatgttga 2435266  T
Q  109 tgattcattatttttgcaagcacatataacaacaaaagtatgcatataccttttcttttgttccagcacttccaacaacataacaaccatgcagttttgc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2435265 tgattcattatttttgcaagcacatataacaacaaaagtatgcatataccttttcttttgttccagcacttccaacaacataacaaccatgcagttttgc 2435166  T
Q  209 aaattgacctacaagttgaccaacagcaccggatgcagctgaaacataaacatt 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2435165 aaattgacctacaagttgaccaacagcaccggatgcagctgaaacataaacatt 2435112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 101 - 263
Target Start/End: Complemental strand, 2431887 - 2431721
Alignment:
Q  101 gatgttgatgattcattatttttgcaagcacatataacaacaaaagta----tgcatataccttttcttttgttccagcacttccaacaacataacaacc 196  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||    |||| ||||||||||||| |||||||||||||||||||||||||||||    
T  2431887 gatgttgatgattcatcatttttgcaggcacatataacaacaaaagtaagaatgcaaataccttttctttagttccagcacttccaacaacataacaacc 2431788  T
Q  197 atgcagttttgcaaattgacctacaagttgaccaacagcaccggatgcagctgaaacataaacattt 263  Q
    ||||| |||||||||||| || ||||||||||||||||||| |||||| ||||||||||||||||||    
T  2431787 atgcaattttgcaaattggccaacaagttgaccaacagcactggatgccgctgaaacataaacattt 2431721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 154 - 262
Target Start/End: Original strand, 2517297 - 2517405
Alignment:
Q  154 ataccttttcttttgttccagcacttccaacaacataacaaccatgcagttttgcaaattgacctacaagttgaccaacagcaccggatgcagctgaaac 253  Q
    ||||||| |||||  |||||||||||||||||||||| |||||||||| ||| |||||||| || |||||||||||||| ||||| || |||||||||||    
T  2517297 ataccttctctttacttccagcacttccaacaacatagcaaccatgcaatttagcaaattgtccaacaagttgaccaactgcaccagaagcagctgaaac 2517396  T
Q  254 ataaacatt 262  Q
    | |||||||    
T  2517397 aaaaacatt 2517405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 262
Target Start/End: Original strand, 2506282 - 2506432
Alignment:
Q  113 tcattatttttgcaagcacatataacaacaaaagtatg-catataccttttcttttgttccagcacttccaacaacataacaaccatgcagttttgcaaa 211  Q
    |||| |||| |||| |||||||||||||||| | |  | |||||||||| |||||  |||||||||||||||| || || |||||||||| ||| || ||    
T  2506282 tcatcatttatgcaggcacatataacaacaacaatcagacatataccttctctttacttccagcacttccaacgacttagcaaccatgcaatttagcgaa 2506381  T
Q  212 ttgacctacaagttgaccaacagcaccggatgcagctgaaacataaacatt 262  Q
    ||| || |||||||||||||| ||||| || |||||||||||| |||||||    
T  2506382 ttggccaacaagttgaccaactgcaccagaggcagctgaaacaaaaacatt 2506432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 262
Target Start/End: Complemental strand, 1459146 - 1459038
Alignment:
Q  154 ataccttttcttttgttccagcacttccaacaacataacaaccatgcagttttgcaaattgacctacaagttgaccaacagcaccggatgcagctgaaac 253  Q
    ||||||| |||||  |||||||||||||||| ||||| |||||||||| ||| || ||||| || |||||||||||||| ||||| || |||||||||||    
T  1459146 ataccttctctttacttccagcacttccaacgacatagcaaccatgcaatttagcgaattggccaacaagttgaccaactgcaccagaggcagctgaaac 1459047  T
Q  254 ataaacatt 262  Q
    | |||||||    
T  1459046 aaaaacatt 1459038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 262
Target Start/End: Complemental strand, 2428853 - 2428745
Alignment:
Q  154 ataccttttcttttgttccagcacttccaacaacataacaaccatgcagttttgcaaattgacctacaagttgaccaacagcaccggatgcagctgaaac 253  Q
    ||||||| |||||  |||||||||||||||| ||||| |||||||||| ||| || ||||| || |||||||||||||| ||||| || |||||||||||    
T  2428853 ataccttctctttacttccagcacttccaacgacatagcaaccatgcaatttagcgaattggccaacaagttgaccaactgcaccagaggcagctgaaac 2428754  T
Q  254 ataaacatt 262  Q
    | |||||||    
T  2428753 aaaaacatt 2428745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 262
Target Start/End: Original strand, 2512937 - 2513045
Alignment:
Q  154 ataccttttcttttgttccagcacttccaacaacataacaaccatgcagttttgcaaattgacctacaagttgaccaacagcaccggatgcagctgaaac 253  Q
    ||||||| |||||  |||||||||||||||| ||||| |||||||||| ||| || ||||| || |||||||||||||| || || || |||||||||||    
T  2512937 ataccttctctttacttccagcacttccaacgacatagcaaccatgcaatttagcgaattggccaacaagttgaccaactgctccagaggcagctgaaac 2513036  T
Q  254 ataaacatt 262  Q
    | |||||||    
T  2513037 aaaaacatt 2513045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 2497597 - 2497703
Alignment:
Q  154 ataccttttcttttgttccagcacttccaacaacataacaaccatgcagttttgcaaattgacctacaagttgaccaacagcaccggatgcagctgaaac 253  Q
    ||||||| |||||  ||||||||||||| ||||||||||| ||   |||||| || |||||||| ||||||||||| || ||||| || |||||||||||    
T  2497597 ataccttctctttacttccagcacttcctacaacataacatcctgtcagtttagcgaattgaccaacaagttgaccgactgcaccagaggcagctgaaac 2497696  T
Q  254 ataaaca 260  Q
    | |||||    
T  2497697 aaaaaca 2497703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 261
Target Start/End: Original strand, 946103 - 946210
Alignment:
Q  154 ataccttttcttttgttccagcacttccaacaacataacaaccatgcagttttgcaaattgacctacaagttgaccaacagcaccggatgcagctgaaac 253  Q
    |||||||||||||||  || ||||||||||||||||| |||||||||| ||| |||| |||||| ||||||||||| |||||||| ||||| ||||||||    
T  946103 ataccttttcttttgagccggcacttccaacaacatagcaaccatgcaatttagcaagttgaccaacaagttgacccacagcacctgatgctgctgaaac 946202  T
Q  254 ataaacat 261  Q
    | ||||||    
T  946203 aaaaacat 946210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 6742652 - 6742713
Alignment:
Q  156 accttttcttttgttccagcacttccaacaacataacaaccatgcagttttgcaaattgacc 217  Q
    ||||||||||| |||||||||||||||||||||||| ||||| ||| |||| || |||||||    
T  6742652 accttttctttagttccagcacttccaacaacataaaaaccacgcaattttacagattgacc 6742713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 32259418 - 32259345
Alignment:
Q  171 ccagcacttccaacaacataacaaccatgcagttttgcaaattgacctacaagttgaccaacagcaccggatgc 244  Q
    ||||||||||||||||||||||||||   || |||||||||||| ||  | || ||||| |||||||| |||||    
T  32259418 ccagcacttccaacaacataacaacccaacaattttgcaaattgtccggccagctgaccgacagcacctgatgc 32259345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University