View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4528_low_5 (Length: 263)
Name: NF4528_low_5
Description: NF4528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4528_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 48101807 - 48102051
Alignment:
| Q |
1 |
tggtggtaacgattttgtaaacaattactacttggtgccttattccgcaaggtctcgcgaatattcgctacaagattatgtcaaatttctcatcatagag |
100 |
Q |
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| T |
48101807 |
tggtggtaacgattttgtaaacaattactacttggtgccttattccgcaaggtctcgcgaatattcgctacaagattatgtcaaatttctcatcatagag |
48101906 |
T |
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| Q |
101 |
tatcgcaaactcttagaggtaaataacctaactggtatactaacatttatctatgtaagatgtcaacgtcgtgataagagtttgacataattatatatat |
200 |
Q |
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| T |
48101907 |
tatcgcaaactcttagaggtaaataacctaactggtatactaaaatttatctatgtaagatgtcaacgtcgtgataagagtttgacataattatatatat |
48102006 |
T |
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| Q |
201 |
gttgcagagactatatgatataggagctcgtagagttcttgtgac |
245 |
Q |
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| T |
48102007 |
gttgcagagactatatgatataggagctcgtagagttcttgtgac |
48102051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 7386943 - 7386887
Alignment:
| Q |
1 |
tggtggtaacgattttgtaaacaattactacttggtgccttattccgcaaggtctcg |
57 |
Q |
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| T |
7386943 |
tggtggcaatgattttgtgaataactactacttggtgccttattctgcaaggtctcg |
7386887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 7386217 - 7386158
Alignment:
| Q |
186 |
cataattatatatatgttgcagagactatatgatataggagctcgtagagttcttgtgac |
245 |
Q |
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|||| ||||||||||| |||||| |||||||||| | |||||| | |||||||||||||| |
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| T |
7386217 |
catagttatatatatgatgcagaaactatatgatttgggagctagaagagttcttgtgac |
7386158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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