View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4528_low_7 (Length: 240)
Name: NF4528_low_7
Description: NF4528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4528_low_7 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 1492796 - 1493015
Alignment:
| Q |
17 |
aaaaaggaccttacactatgtgtgggaccatactaggtttctatgtataacataaatttaatatgcacttttaataaagaagtagtatcaccacacttca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1492796 |
aaaaaggaccttacactatgtgtgggaccatactaggtttctatgtataacataaatttaatatgcacttttaataaagaagtagtatcaccacacttca |
1492895 |
T |
|
| Q |
117 |
agagcttccacttcaacctcatcacacaaattaattaatgtgaccatcacagtgagtgctatgtcagatattctcaaagttcacaacactttttcaatca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1492896 |
agagcttccacttcaacctcatcacaca----aattaatgtgaccatcacagtgagtgctatgtcagatattctcaaagttcacaacactttttcaatca |
1492991 |
T |
|
| Q |
217 |
gcaatttggcttgtagtgtagtta |
240 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
1492992 |
gcattttggcttgtagtgtagtta |
1493015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University