View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4529-Insertion-2 (Length: 787)

Name: NF4529-Insertion-2
Description: NF4529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4529-Insertion-2
NF4529-Insertion-2
[»] chr1 (24 HSPs)
chr1 (7-657)||(27777255-27777902)
chr1 (7-786)||(27781936-27782706)
chr1 (182-382)||(27780947-27781156)
chr1 (515-627)||(38226776-38226888)
chr1 (7-100)||(27780669-27780762)
chr1 (274-484)||(27781156-27781385)
chr1 (343-412)||(38226961-38227030)
chr1 (223-307)||(38227213-38227300)
chr1 (242-313)||(38227135-38227206)
chr1 (242-312)||(38226992-38227062)
chr1 (242-313)||(38227063-38227134)
chr1 (277-382)||(27781120-27781234)
chr1 (349-406)||(17663585-17663642)
chr1 (538-629)||(17700129-17700220)
chr1 (245-313)||(17663550-17663618)
chr1 (349-409)||(21899127-21899187)
chr1 (689-731)||(17699998-17700040)
chr1 (356-406)||(17700337-17700387)
chr1 (550-621)||(17663772-17663843)
chr1 (250-313)||(17700361-17700424)
chr1 (507-550)||(27781396-27781439)
chr1 (341-396)||(38227049-38227104)
chr1 (568-622)||(21898914-21898968)
chr1 (268-305)||(21079010-21079047)
[»] chr4 (6 HSPs)
chr4 (343-621)||(35249931-35250217)
chr4 (226-313)||(35250178-35250265)
chr4 (186-313)||(51220034-51220161)
chr4 (223-307)||(51220827-51220911)
chr4 (349-409)||(51220007-51220067)
chr4 (349-408)||(51220795-51220854)
[»] chr7 (2 HSPs)
chr7 (186-312)||(440929-441055)
chr7 (343-409)||(440901-440967)
[»] chr8 (1 HSPs)
chr8 (186-255)||(44989768-44989837)


Alignment Details
Target: chr1 (Bit Score: 564; Significance: 0; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 7 - 657
Target Start/End: Original strand, 27777255 - 27777902
Alignment:
Q  7 acatatgatatgtcactcaccaactgctgcatcatcttcctctgcacaaagctatgacgatcactttctaccacctaagaaacggcaggtgctaagaaga 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27777255 acatatgatatgtcactcaccaactgctgcatcatcttcctctgcacaaagctatgacgatcactttctaccacctaagaaacggcaggtactaagaaga 27777354  T
Q  107 ataagttacatgaataatgatgatgatgctattgcagctgaaactctattgcatatagctcacggcggtttcgagacaccacaagattgcaaggaacctg 206  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||     
T  27777355 agaagttacatgaataatgatgatgatgctattgcagctgaaactctattgcatatatctcacggcggtttcgagacaccacaagattgaaaggaaccta 27777454  T
Q  207 ctgcctctaatcaaagtattgaagagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27777455 ctgcctctaatcaaagtattgaagagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaag 27777554  T
Q  307 taatgatgtgatgaattttgagcttccatgtgacgatgtgaagaatttagatttgaacgagtttccaagtgatgattgtgaagatgaaaccaattagtgt 406  Q
    ||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27777555 taatgatgtgatgaattttgagcttacaagtgatgatgtgaagaatttagatttgaacgagtttacaagtgatgattgtgaagatgaaaccaattagtgt 27777654  T
Q  407 ctcgtcttggtttaatgattttggatgatattttgaattttgtatgggatgaatacccttgatgttgtcatgtaattttctttaataacaattcttttag 506  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27777655 ctcgtcttggtttaatgattttgaatgatattatgaattttgtatgggatgaatacccttgatgttgtcatgtaattttctttaataacaattcttctag 27777754  T
Q  507 ttaaagcatatcatcatgagttattaagcaatttgcttacaagatatatataaagtctagtttatcaatttccaccttttacttttgtcttaatcttctt 606  Q
    |||||  |||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||    
T  27777755 ttaaa--atatcatcatgaattattgagcaatttgcttacaagatatatataaagtttagtttatcaatttccatcttttacatttgtcttaatcttctt 27777852  T
Q  607 gttttgtttgagtgaaactaaattgagggttgaaaattgatggagatgctt 657  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27777853 gttttgtttgagtgaaactaaattgagggttg-aaattgatggagatgctt 27777902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 7 - 786
Target Start/End: Complemental strand, 27782706 - 27781936
Alignment:
Q  7 acatatgatatgtcactcaccaactgctgcatcatcttcctctgcacaaagctatgacgatcactttctaccacctaagaaacggcaggtgctaagaaga 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27782706 acatatgatatgtcactcaccaactgctgcatcatcttcctctgcacaaagctatgacgatcactttctaccacctaagaaacggcaggttctaagaaga 27782607  T
Q  107 ataagttacatgaataatgatgatgatgctattgcagctgaaactctattgcatatagctcacggcggtttcgagacaccacaagattgcaaggaacctg 206  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||     
T  27782606 agaagttacatgaataatgatgatgatgctattgcagctgaaactctattgcatatatctcacggcggtttcgagacaccacaagattgtaaggaacctt 27782507  T
Q  207 ctgcctctaatcaaagtattgaagagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaag 306  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27782506 ctgcctctaatcaaagtattgatgagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaag 27782407  T
Q  307 taatgatgtgatgaattttgagcttccatgtgacgatgtgaagaatttagatttgaacgagtttccaagtgatgattgtgaagatgaaaccaattagtgt 406  Q
    ||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27782406 taatgatgtgatgaattttgagctttcaagtgatgatgtgaagaatttagatttgaacgagttttcaagtgatgattgtgaagatgaaaccaattagtgt 27782307  T
Q  407 ctcgtcttggtttaatgattttggatgatattttgaattttgtatgggatgaatacccttgatgttgtcatgtaattttctttaataacaattcttttag 506  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27782306 ctcgtcttggtttaatgattttgaatgatattatgaattttgtatgggatgaatacccttgatgttgtcatgtaattttctttaataacaattcttttag 27782207  T
Q  507 ttaaagcatatcatcatgagttattaagcaatttgcttacaagatatatataaagtctagtttatcaatttccaccttttacttttgtcttaatcttctt 606  Q
    |||||| |||||||||||| ||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||     
T  27782206 ttaaagtatatcatcatgaattattgagcaattcgcttacaagatatatataaagtttagtttatcaatttccaccttttacatttgtcttaatcttcta 27782107  T
Q  607 gttttgtttgagtgaaactaaattgagggttgaaaattgatggagatgcttcttattggtttgaa----gaatttctagatgggtaatgagtttactctc 702  Q
    |||||||||||||||||||||| | ||  ||  |||||| ||||||   ||||   |||||||||    | || |||||||| ||||||||||||||       
T  27782106 gttttgtttgagtgaaactaaact-agtatt--aaattgttggaga---ttctgcatggtttgaataatgcatgtctagatgagtaatgagtttact--- 27782016  T
Q  703 aaagagtggcttcatgtggaaaatatgtatcaaaaatatcacggttaaggttaccctatcctatatagttatgttataataatt 786  Q
       ||||||||| |||||||||||||| |||| |||||  | ||||||||||| |||||||| | |||||||||||||||||||    
T  27782015 ---gagtggcttgatgtggaaaatatgcatcataaatacgatggttaaggtta-cctatcctgtttagttatgttataataatt 27781936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 182 - 382
Target Start/End: Original strand, 27780947 - 27781156
Alignment:
Q  182 acaccacaagattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaaga 281  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||    
T  27780947 acaccacaatattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagattaatgaaggtgaaacaaaattagggtcaaaagttgtgaaga 27781046  T
Q  282 attttgatttgaacgagcttccaagtaatgatgtgatgaatttt---------gagcttccatgtgacgatgtgaagaatttagatttgaacgagtttcc 372  Q
    ||||||||||| |||||||||||||| ||||| ||| |||||||         ||||||||| |||| |||| ||||||||| ||||||||||||| |||    
T  27781047 attttgatttggacgagcttccaagtgatgatatgaagaattttgatttgaacgagcttccaagtgatgatgcgaagaattttgatttgaacgagtatcc 27781146  T
Q  373 aagtgatgat 382  Q
    || |||||||    
T  27781147 aattgatgat 27781156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 515 - 627
Target Start/End: Complemental strand, 38226888 - 38226776
Alignment:
Q  515 tatcatcatgagttattaagcaatttgcttacaagatatatataaagtctagtttatcaatttccaccttttacttttgtcttaatcttcttgttttgtt 614  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||  |||||||    
T  38226888 tatcatcatgaattattgagcaatttgcttacaagatatatataaagtttagtttatcaatttacaccttttacatttgtcttaatcttctaattttgtt 38226789  T
Q  615 tgagtgaaactaa 627  Q
    ||||| |||||||    
T  38226788 tgagttaaactaa 38226776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 27780669 - 27780762
Alignment:
Q  7 acatatgatatgtcactcaccaactgctgcatcatcttcctctgcacaaagctatgacgatcactttctaccacctaagaaacggcaggtgcta 100  Q
    |||||||||||||||||| |||||||||||| ||||||||| |||||| |||||||| ||||| ||||||||||| ||||||||||||| ||||    
T  27780669 acatatgatatgtcactcgccaactgctgcaccatcttcctttgcacagagctatgatgatcagtttctaccacccaagaaacggcaggcgcta 27780762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 274 - 484
Target Start/End: Original strand, 27781156 - 27781385
Alignment:
Q  274 tgtgaagaattttgatttgaacgagcttccaagtaatgatgtgatgaattttgagct---------tccatgtgacgatgtgaagaatttagatttgaac 364  Q
    |||||||||||||||||||||| ||||||||||| ||||||||| |||||||||  |         ||||  ||| |||||||||||||| |||| ||||    
T  27781156 tgtgaagaattttgatttgaacaagcttccaagtgatgatgtgaagaattttgatttgaacgagtatccaattgatgatgtgaagaattttgattcgaac 27781255  T
Q  365 gagtttccaagtgatgattgtgaagatgaaaccaattagtgtctcgtcttggttta----------atgattttggatgatattttgaattttgtatggg 454  Q
    | | |||||||  || ||| ||||||||||   | |||| |||||||||| |||||          ||||||||| |||||||| |||||||| ||||||    
T  27781256 gtgcttccaagaaataattttgaagatgaagatatttagcgtctcgtcttagtttatatctttttaatgattttgaatgatattatgaattttttatggg 27781355  T
Q  455 atgaatacccttgatgttgtcatgtaattt 484  Q
    ||| ||||||||||||||||||||||||||    
T  27781356 atggatacccttgatgttgtcatgtaattt 27781385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 343 - 412
Target Start/End: Complemental strand, 38227030 - 38226961
Alignment:
Q  343 tgtgaagaatttagatttgaacgagtttccaagtgatgattgtgaagatgaaaccaattagtgtctcgtc 412  Q
    ||||||||||||||||||||||||| ||||||||||||| | ||||||| ||||||||||||||||||||    
T  38227030 tgtgaagaatttagatttgaacgagcttccaagtgatgagtttgaagataaaaccaattagtgtctcgtc 38226961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 223 - 307
Target Start/End: Complemental strand, 38227300 - 38227213
Alignment:
Q  223 tattgaagagaagaagatga---atgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagt 307  Q
    ||||||||||||||||| ||   ||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  38227300 tattgaagagaagaagacgattaatgaaggtgaaactgaattagggtcaaaagttgtgaagaatgttgatttgaacgagctttcaagt 38227213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 38227206 - 38227135
Alignment:
Q  242 aatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgat 313  Q
    |||||||||||||| ||| |||||||||||||||| |||||| ||||||||||||||||||||||| |||||    
T  38227206 aatgaaggtgaaactgaattagggtcaaaagttgttaagaatgttgatttgaacgagcttccaagtgatgat 38227135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 242 - 312
Target Start/End: Complemental strand, 38227062 - 38226992
Alignment:
Q  242 aatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatga 312  Q
    |||||||||||||| |||  |||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  38227062 aatgaaggtgaaactgaatcagggtcaaaagttgtgaagaatttagatttgaacgagcttccaagtgatga 38226992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 38227134 - 38227063
Alignment:
Q  242 aatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgat 313  Q
    |||||||||||| | ||| |||||||||||| |||||||||||||||||||||||| ||||||||| |||||    
T  38227134 aatgaaggtgaagctgaattagggtcaaaagatgtgaagaattttgatttgaacgaacttccaagtgatgat 38227063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 277 - 382
Target Start/End: Original strand, 27781120 - 27781234
Alignment:
Q  277 gaagaattttgatttgaacgagcttccaagtaatgatgtgatgaattttg---------agcttccatgtgacgatgtgaagaatttagatttgaacgag 367  Q
    ||||||||||||||||||||||  ||||| | ||||||||| ||||||||         |||||||| |||| |||||||||||||| ||||||||||||    
T  27781120 gaagaattttgatttgaacgagtatccaattgatgatgtgaagaattttgatttgaacaagcttccaagtgatgatgtgaagaattttgatttgaacgag 27781219  T
Q  368 tttccaagtgatgat 382  Q
    | ||||| |||||||    
T  27781220 tatccaattgatgat 27781234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 349 - 406
Target Start/End: Original strand, 17663585 - 17663642
Alignment:
Q  349 gaatttagatttgaacgagtttccaagtgatgattgtgaagatgaaaccaattagtgt 406  Q
    |||||| |||||||| ||| ||||||||||||||| ||||||||||||||||||||||    
T  17663585 gaattttgatttgaatgagcttccaagtgatgattttgaagatgaaaccaattagtgt 17663642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 538 - 629
Target Start/End: Complemental strand, 17700220 - 17700129
Alignment:
Q  538 tttgcttacaagatatatataaagtctagtttatcaatttccaccttttacttttgtcttaatcttcttgttttgtttgagtgaaactaaat 629  Q
    |||||| ||| |||||||||||| | ||| |||||||||||||||||||    |||||||||||||||  ||||||||| ||||| ||||||    
T  17700220 tttgctgacacgatatatataaattttagattatcaatttccaccttttgtggttgtcttaatcttctaattttgtttgtgtgaatctaaat 17700129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 17663550 - 17663618
Alignment:
Q  245 gaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgat 313  Q
    |||| |||||| ||| ||||||||| |||||| | ||||||||||||||| |||||||||||| |||||    
T  17663550 gaagatgaaaccgaattagggtcaagagttgtcaggaattttgatttgaatgagcttccaagtgatgat 17663618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 409
Target Start/End: Complemental strand, 21899187 - 21899127
Alignment:
Q  349 gaatttagatttgaacgagtttccaagtgatgattgtgaagatgaaaccaattagtgtctc 409  Q
    |||||| |||||||| ||| || ||||||| |||| |||||||||||||||||||||||||    
T  21899187 gaattttgatttgaatgagatttcaagtgacgattttgaagatgaaaccaattagtgtctc 21899127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 689 - 731
Target Start/End: Complemental strand, 17700040 - 17699998
Alignment:
Q  689 atgagtttactctcaaagagtggcttcatgtggaaaatatgta 731  Q
    ||||||||||| |||||||||||||| ||||||||||||||||    
T  17700040 atgagtttactgtcaaagagtggcttaatgtggaaaatatgta 17699998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 356 - 406
Target Start/End: Complemental strand, 17700387 - 17700337
Alignment:
Q  356 gatttgaacgagtttccaagtgatgattgtgaagatgaaaccaattagtgt 406  Q
    |||||||| ||| ||||||||||||||| ||||||||||| ||||||||||    
T  17700387 gatttgaatgagcttccaagtgatgattttgaagatgaaaacaattagtgt 17700337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 550 - 621
Target Start/End: Original strand, 17663772 - 17663843
Alignment:
Q  550 atatatataaagtctagtttatcaatttccaccttttacttttgtcttaatcttcttgttttgtttgagtga 621  Q
    ||||||||||| | ||| || ||||||||||||||||   ||||||||||||||||  ||||||||| ||||    
T  17663772 atatatataaattttagattttcaatttccaccttttgtgtttgtcttaatcttctaattttgtttgtgtga 17663843  T

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Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 313
Target Start/End: Complemental strand, 17700424 - 17700361
Alignment:
Q  250 tgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgat 313  Q
    |||||| ||| ||||||||| |||||| | |||| |||||||||| |||||||||||| |||||    
T  17700424 tgaaaccgaattagggtcaagagttgtcaggaatgttgatttgaatgagcttccaagtgatgat 17700361  T

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Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 550
Target Start/End: Original strand, 27781396 - 27781439
Alignment:
Q  507 ttaaagcatatcatcatgagttattaagcaatttgcttacaaga 550  Q
    |||||| |||||||||||| ||||| ||||||||||||||||||    
T  27781396 ttaaagtatatcatcatgaattattgagcaatttgcttacaaga 27781439  T

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Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 396
Target Start/End: Complemental strand, 38227104 - 38227049
Alignment:
Q  341 gatgtgaagaatttagatttgaacgagtttccaagtgatgattgtgaagatgaaac 396  Q
    |||||||||||||| |||||||||||  ||||||||||||||  ||||| ||||||    
T  38227104 gatgtgaagaattttgatttgaacgaacttccaagtgatgataatgaaggtgaaac 38227049  T

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Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 568 - 622
Target Start/End: Complemental strand, 21898968 - 21898914
Alignment:
Q  568 ttatcaatttccaccttttacttttgtcttaatcttcttgttttgtttgagtgaa 622  Q
    |||||||||||||||||||   ||||||||||||||||  ||||||||| |||||    
T  21898968 ttatcaatttccaccttttgtgtttgtcttaatcttctaattttgtttgtgtgaa 21898914  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 21079010 - 21079047
Alignment:
Q  268 aaaagttgtgaagaattttgatttgaacgagcttccaa 305  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  21079010 aaaagttgttaggaattttgatttgaacgagcttccaa 21079047  T

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Target: chr4 (Bit Score: 119; Significance: 2e-60; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 343 - 621
Target Start/End: Complemental strand, 35250217 - 35249931
Alignment:
Q  343 tgtgaagaatttagatttgaacgagtttccaagtgatgattgtgaagatgaaaccaattagtgtctcgtcttggttta----------atgattttggat 432  Q
    |||||||||||| |||||||||||| || |||||||||||| |||||||||| |||||||||||||||||||||||||          ||||||||| ||    
T  35250217 tgtgaagaattttgatttgaacgagcttgcaagtgatgattttgaagatgaatccaattagtgtctcgtcttggtttatatctttttaatgattttgaat 35250118  T
Q  433 gatattttgaattttgtatgggatgaatacccttgatgttgtcatgtaattttctttaataacaattcttttagttaaagcatatcatcatgagttatta 532  Q
    |||||| ||  |||||| |||||||||||||||||||||| ||||||||||||| |||||   || |  ||||||||||  |||||||||||| |||||     
T  35250117 gatattatggtttttgtgtgggatgaatacccttgatgttatcatgtaattttccttaattggaagttgtttagttaaa--atatcatcatgaattattg 35250020  T
Q  533 agcaatttgcttacaagatatatataaagtctagtttatcaatttccaccttttacttttgtcttaatcttcttgttttgtttgagtga 621  Q
    |||||||||||||||| ||||||||| ||| ||| |||||||||   ||||||||| ||||||||| ||||||  ||||||||||||||    
T  35250019 agcaatttgcttacaacatatatatagagtttagattatcaattattaccttttacatttgtcttagtcttctaattttgtttgagtga 35249931  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 226 - 313
Target Start/End: Complemental strand, 35250265 - 35250178
Alignment:
Q  226 tgaagagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgat 313  Q
    ||||||||||||||| ||||||| |||||| ||| | ||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  35250265 tgaagagaagaagattaatgaagctgaaactgaaatcgggtcaaaagttgtgaagaattttgatttgaacgagcttgcaagtgatgat 35250178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 186 - 313
Target Start/End: Complemental strand, 51220161 - 51220034
Alignment:
Q  186 cacaagattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattt 285  Q
    |||||||||||||||||| ||   |||||||| |   |||||||||||||||||| || ||| ||||||| ||| ||||||||| |||||| | ||||||    
T  51220161 cacaagattgcaaggaacatgactcctctaataatgatattgaagagaagaagattaacgaaagtgaaactgaattagggtcaatagttgttatgaattt 51220062  T
Q  286 tgatttgaacgagcttccaagtaatgat 313  Q
    ||||| ||| |||||||||||| |||||    
T  51220061 tgattcgaatgagcttccaagtgatgat 51220034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 223 - 307
Target Start/End: Complemental strand, 51220911 - 51220827
Alignment:
Q  223 tattgaagagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagt 307  Q
    |||||||||||||||||| || ||| ||||||| ||| ||||||||| | |||| | ||||||||| ||||||||||||||||||    
T  51220911 tattgaagagaagaagattaacgaaagtgaaactgaattagggtcaataattgttatgaattttgaattgaacgagcttccaagt 51220827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 349 - 409
Target Start/End: Complemental strand, 51220067 - 51220007
Alignment:
Q  349 gaatttagatttgaacgagtttccaagtgatgattgtgaagatgaaaccaattagtgtctc 409  Q
    |||||| |||| ||| ||| ||||||||||||||| |||||||||||||||||||||||||    
T  51220067 gaattttgattcgaatgagcttccaagtgatgattttgaagatgaaaccaattagtgtctc 51220007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 349 - 408
Target Start/End: Complemental strand, 51220854 - 51220795
Alignment:
Q  349 gaatttagatttgaacgagtttccaagtgatgattgtgaagatgaaaccaattagtgtct 408  Q
    |||||| || ||||||||| |||||||||||| || ||||||||||||||| ||||||||    
T  51220854 gaattttgaattgaacgagcttccaagtgatggttttgaagatgaaaccaactagtgtct 51220795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 186 - 312
Target Start/End: Complemental strand, 441055 - 440929
Alignment:
Q  186 cacaagattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattt 285  Q
    |||||||||||||||||||| || ||||||||||  ||||||||||||||| ||| ||||||||||  || ||| ||||| |||||||||||||||||||    
T  441055 cacaagattgcaaggaacctcctacctctaatcatggtattgaagagaagatgattaatgaaggtgttactgaattagggccaaaagttgtgaagaattt 440956  T
Q  286 tgatttgaacgagcttccaagtaatga 312  Q
    |||||||||||||||||||||| ||||    
T  440955 tgatttgaacgagcttccaagtgatga 440929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 343 - 409
Target Start/End: Complemental strand, 440967 - 440901
Alignment:
Q  343 tgtgaagaatttagatttgaacgagtttccaagtgatgattgtgaagatgaaaccaattagtgtctc 409  Q
    |||||||||||| |||||||||||| ||||||||||||| | |||||||||||| ||||||||||||    
T  440967 tgtgaagaattttgatttgaacgagcttccaagtgatgactttgaagatgaaactaattagtgtctc 440901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 44989837 - 44989768
Alignment:
Q  186 cacaagattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagatgaatgaaggtgaaac 255  Q
    |||||||||||||||||||||  | |||||||||   ||||||| |||||||||| || |||||||||||    
T  44989837 cacaagattgcaaggaacctgaaggctctaatcatgatattgaatagaagaagattaacgaaggtgaaac 44989768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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