View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4529-Insertion-3 (Length: 686)

Name: NF4529-Insertion-3
Description: NF4529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4529-Insertion-3
NF4529-Insertion-3
[»] chr3 (1 HSPs)
chr3 (8-683)||(8251100-8251777)


Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 8 - 683
Target Start/End: Original strand, 8251100 - 8251777
Alignment:
Q  8 tctttgacaaagaacctgcttccaccaccacatgagtactcttatcttcttcttcttcagacttgaagcagcaaaatatggctgagagtatagtcatgat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8251100 tctttgacaaagaacctgcttccaccaccacatgagtactcttatctt---cttcttcagacttgaagcagcagaatatggctgagagtatagtcatgat 8251196  T
Q  108 ttttgtgtgatgatggacatgcttttgtgagcttttgggtatatataataatcgaaagtgacttattaggaccatgtgagtataataaggaaaatgtatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||   |||||||||||||| | ||||||||||||||||||    
T  8251197 ttttgtgtgatgatggacatgcttttgtgagcttttgggtatatataataatcgaaaggaac---ttaggaccatgtgaatttaataaggaaaatgtatt 8251293  T
Q  208 tttatattttaaaatacaaccttgcttagcaagtttttgattt------gtttagcttccacaacaaggaa---aatgaccgcaaagactttgactataa 298  Q
    |||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||   | ||||||||||||||||||||||||    
T  8251294 tttatattttaaaatacaaccttgcttagcaagtttttgatttaatttagtttagcttccacaacaaggaaatgagtgaccgcaaagactttgactataa 8251393  T
Q  299 catcaataattattttttcttcaaagatattttaatggataaagggtcttgttaaaggtatttgttaaggatttaaaaataaatatgctcaaaatggatg 398  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8251394 catcaataactattttttcttcaaagatattttaatggataaagggtcttgttaaaggtatttgttaaggatttaaaaataaacatgctcaaaatggatg 8251493  T
Q  399 taaaagggtctttaaacttctcaacaagtgtttttagggtatttgttagcatttttctttacaaaaatggtatattatgtgatttccaatnnnnnnnggt 498  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||       |||    
T  8251494 taaaaaggtctttaaatttctcaacaagtgtttttagggtatttcttagcatttttctttataaaaatggtatattatgtgattttcaat-aaaaaaggt 8251592  T
Q  499 aacacatttttcaatgaattttttagtgattaaaattgacgagttttatcaaatttacatagaagtctgaattgatgagatcatgtgaattctaacaatc 598  Q
    ||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8251593 aacacatttttcaataaattttttagtgattaaaattgacgagtcctatcaaatttaaatagaagtctgaattgatgagatcatgtgaattctaacaatc 8251692  T
Q  599 tttctctcttttctttcaaaaataaaataaagcaatatgttctctctttataagtcgttttggttattttacaaaaattgtacac 683  Q
    ||||||||||||| |||||||||||||||||   ||| ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  8251693 tttctctcttttccttcaaaaataaaataaaattatacgttctctctttataagtcgttttggttatttcacaaagattgtacac 8251777  T

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