View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4529-Insertion-4 (Length: 600)
Name: NF4529-Insertion-4
Description: NF4529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4529-Insertion-4 |
 | |
|
| [»] chr3 (6 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 532; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 12 - 600
Target Start/End: Complemental strand, 1630541 - 1629949
Alignment:
| Q |
12 |
cactatcgcttatgtacttttatatgaatatatatagtcatattaatcaaaatatctggattcgtcacttgcagaaacagaagaagggtcatttccaaat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1630541 |
cactatcgcttatgtacttttatatgaatatatatagtcatactaatcaaaaattttggattcgtcacttgcagaaacagaagaagggtcattttcaaat |
1630442 |
T |
|
| Q |
112 |
tggttttctgtgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagattgtgc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
1630441 |
tggttttctgtgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggacagtacaagactgtgc |
1630342 |
T |
|
| Q |
212 |
aagctgctttaaatgctgttgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgtcca |
311 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1630341 |
aagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttca |
1630242 |
T |
|
| Q |
312 |
taatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaaca |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1630241 |
taatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaaca |
1630142 |
T |
|
| Q |
412 |
gcaggtgagttatattccatctcctttaatctctttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatac |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1630141 |
gcaggtgagttatattccatctcctttaatctctttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatac |
1630042 |
T |
|
| Q |
512 |
ttgaggctttctta----catacaattactttaattttttattttaaataattactcttggatcatttaaatttaggtattgatggacttcac |
600 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1630041 |
ttgaggctttcttacatgcatacaattactttcattttttattttaaataattactcttggatcatttaaatttaggtattgatggacttcac |
1629949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 8 - 436
Target Start/End: Complemental strand, 1607552 - 1607121
Alignment:
| Q |
8 |
ataacactatcgcttatgtactttt-atatgaatatatata--gtcatattaatcaaaatatctggattcgtcacttgcagaaacagaagaagggtcatt |
104 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1607552 |
ataacactatcgcttatgtactttttatatgaatatatatatagtcatactaatcaaaatttctggattcgtcacttgcagaaacagaagaagggtcatt |
1607453 |
T |
|
| Q |
105 |
tccaaattggttttctgtgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1607452 |
tccaaattggttttctgtgcatgaaaggaagcttttgcagtcaaagggtccagtaaagtacaatcttgtggtggcaaaagatggttctggacagtacaag |
1607353 |
T |
|
| Q |
205 |
attgtgcaagctgctttaaatgctgttgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttg |
304 |
Q |
| |
|
| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1607352 |
actgtgcaggctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttg |
1607253 |
T |
|
| Q |
305 |
ctgtccataatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctc |
404 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1607252 |
ctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccacttatagctc |
1607153 |
T |
|
| Q |
405 |
tgcaacagcaggtgagttatattccatctcct |
436 |
Q |
| |
|
||||||||||||||| ||||||| ||| |||| |
|
|
| T |
1607152 |
tgcaacagcaggtgaattatatttcatttcct |
1607121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 40 - 436
Target Start/End: Complemental strand, 1624538 - 1624142
Alignment:
| Q |
40 |
tatatatagtcatattaatcaaaatatctggattcgtcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagcttt |
139 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1624538 |
tatatatagtcatactaatcaaaatttctggatccgtcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagcttt |
1624439 |
T |
|
| Q |
140 |
tgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagattgtgcaagctgctttaaatgctgttgctaagag |
239 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
1624438 |
tgcagtcaaagggtccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagag |
1624339 |
T |
|
| Q |
240 |
aaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgtccataatgacaatattatgctggttggtgat |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1624338 |
aaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgat |
1624239 |
T |
|
| Q |
340 |
ggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgagttatattccatctcct |
436 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
1624238 |
gggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagcaggtgaattatatttcatttcct |
1624142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 8 - 434
Target Start/End: Original strand, 10819728 - 10820160
Alignment:
| Q |
8 |
ataacactatcgcttatgtactttt-atatgaatatatatagtcatattaatcaaaatatctggattcgtcacttgcagaaacagaa------gaagggt |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||| ||||| |||| ||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
10819728 |
ataacactatcgcttatgtactttttatataaatatatatagtcatactaatctaaatttctggatccgtca-ttgcagaaacagaaatagaagaagggt |
10819826 |
T |
|
| Q |
101 |
catttccaaattggttttctgtgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatcttgtggtggcaaaagatggttctggtcagta |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10819827 |
cacttccaaattggttttctgtgcatgaaaggaagcttttgcagtctaagtctccaatgaagttcaatcttgtggtggcaaaagatggttctggacagta |
10819926 |
T |
|
| Q |
201 |
caagattgtgcaagctgctttaaatgctgttgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgag |
300 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
10819927 |
caagactgtgcaagctgctttaaatgctgctgctaagagaaaatacaagacaaggtatgtgatacatgtgaagaaaggtgtttataaagagaacattgag |
10820026 |
T |
|
| Q |
301 |
gttgctgtccataatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttata |
400 |
Q |
| |
|
|||||||| |||||||| || |||||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10820027 |
gttgctgttcataatgataacattatgttggtcggtgatggaatgcaaaataccatcataacaagttctagaagtgttcaaggtggttttaccacttata |
10820126 |
T |
|
| Q |
401 |
gctctgcaacagcaggtgagttatattccatctc |
434 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
10820127 |
gctctgcaacagccggtgagttatattccatctc |
10820160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 445 - 600
Target Start/End: Original strand, 10820598 - 10820749
Alignment:
| Q |
445 |
tttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatacttgaggctttcttacatacaattactttaattt |
544 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| || | |
|
|
| T |
10820598 |
tttttattttatattttgaagttctaaaattttatactaagataggtttataatatttaaattataattgtggctttcttacctacaattactttcatat |
10820697 |
T |
|
| Q |
545 |
tttattttaaataattactcttggatcatttaaatttaggtattgatggacttcac |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10820698 |
----ttttaaataattactcttggatcatttaaatttaggtattgatggacttcac |
10820749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 562 - 600
Target Start/End: Complemental strand, 1606689 - 1606651
Alignment:
| Q |
562 |
ctcttggatcatttaaatttaggtattgatggacttcac |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606689 |
ctcttggatcatttaaatttaggtattgatggacttcac |
1606651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 76 - 425
Target Start/End: Complemental strand, 18785528 - 18785179
Alignment:
| Q |
76 |
tcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatcttgtgg |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18785528 |
tcacttgcagaaacagaagaagggtcatttccaaattggttttctatgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatattgtgg |
18785429 |
T |
|
| Q |
176 |
tggcaaaagatggttctggtcagtacaagattgtgcaagctgctttaaatgctgttgctaagagaaaatataagacaaggtttgtgatacatgttaagaa |
275 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18785428 |
tggcaaaagatggttctggacagtacaagactgtgcaagctgctctaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgtgaagaa |
18785329 |
T |
|
| Q |
276 |
aggtgtttatagagagaacattgaggttgctgtccataatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagt |
375 |
Q |
| |
|
||||||||||| |||||||||||||||||| || || ||||| || |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18785328 |
aggtgtttataaagagaacattgaggttgcggttcacaatgataacattatgttggttggtgatgggatgcaaaataccataataacaagttctagaagt |
18785229 |
T |
|
| Q |
376 |
gttcaaggtggttataccacttatagctctgcaacagcaggtgagttata |
425 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18785228 |
gttcaaggtggttttaccacttatagctctgcaacagcaggtgaattata |
18785179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 417
Target Start/End: Complemental strand, 12803551 - 12803384
Alignment:
| Q |
250 |
acaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgtccat-aatgacaatattatgctggttggtgatggtatgcaa |
348 |
Q |
| |
|
||||| ||||| |||| ||| ||||||||||||||||||||||| |||| ||||| | || ||||| ||||||||| |||| |||||||| | | |
|
|
| T |
12803551 |
acaagatttgttatacgtgtgaagaaaggtgtttatagagagaatattgtggttg-ggaagatgaatgataatattatgttggtaggtgatggaagtaga |
12803453 |
T |
|
| Q |
349 |
aataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggt |
417 |
Q |
| |
|
||||| | ||||||||| ||||| |||||||| ||||| ||| || ||||||||||| || |||||| |
|
|
| T |
12803452 |
aatacagtgataacaagtaatagaaatgttcaagctggttttactacctatagctctgccactgcaggt |
12803384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University