View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4529-Insertion-6 (Length: 289)

Name: NF4529-Insertion-6
Description: NF4529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4529-Insertion-6
NF4529-Insertion-6
[»] chr2 (7 HSPs)
chr2 (8-289)||(33599442-33599723)
chr2 (182-270)||(2336638-2336726)
chr2 (136-270)||(13766798-13766934)
chr2 (178-230)||(13091823-13091875)
chr2 (164-268)||(2803204-2803308)
chr2 (147-230)||(31053453-31053537)
chr2 (185-229)||(33561510-33561554)
[»] chr1 (1 HSPs)
chr1 (133-260)||(8240611-8240738)
[»] chr8 (3 HSPs)
chr8 (164-226)||(30737656-30737718)
chr8 (185-242)||(11442895-11442952)
chr8 (182-262)||(40991775-40991855)
[»] chr4 (3 HSPs)
chr4 (187-253)||(760220-760286)
chr4 (133-217)||(30788285-30788369)
chr4 (189-253)||(34544137-34544201)
[»] chr7 (1 HSPs)
chr7 (208-253)||(23716031-23716076)
[»] chr5 (1 HSPs)
chr5 (185-250)||(4958252-4958317)
[»] chr6 (2 HSPs)
chr6 (182-230)||(10498850-10498898)
chr6 (186-230)||(20117208-20117252)
[»] chr3 (1 HSPs)
chr3 (182-222)||(50329388-50329428)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 33599442 - 33599723
Alignment:
Q  8 acttgttcttaactattaaccactcaggatgtcttcaaagctcacgatataaagaaaacctcaatgtataacgaacactgacaaatgtattatattgttt 107  Q
    |||||||||||||||||||||||| |||||||| | ||||||||| | |||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  33599442 acttgttcttaactattaaccacttaggatgtcctgaaagctcacaagataaagaaaacctcaatgtacaacgaacaccgacaaatgtattatattgttt 33599541  T
Q  108 ggtcatcagagaagcccaaatgataatccacattggaacaagaacaatcacataaatgagttgtacattgcattttaacccaaaaccttaagacatcgaa 207  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33599542 ggtcatcagggaagcccaaatgataatccacattggaacaaaaacaatcacataaatgagttgtacattgcattttaacccataaccttaagacatcgaa 33599641  T
Q  208 tttatgggtcctctcatttatatatttctcaaccttcacttttctaaacaatgtgaaacttcttaatcacctcacgctttcc 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  33599642 tttatgggtcctctcatttatatatttctcaaccttcacttttctaaacaatgtgaaacttcttactcacctcacactttcc 33599723  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 270
Target Start/End: Complemental strand, 2336726 - 2336638
Alignment:
Q  182 ttaacccaaaaccttaagacatcgaatttatgggtcctctcatttatatatttctcaaccttcacttttctaaacaatgtgaaacttct 270  Q
    ||||||||||| |||||| ||| ||||||||||||||||||| ||||| | |  ||||||| ||||||||||| |||| ||||||||||    
T  2336726 ttaacccaaaatcttaaggcattgaatttatgggtcctctcacttataaagtgttcaacctccacttttctaagcaatttgaaacttct 2336638  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 270
Target Start/End: Complemental strand, 13766934 - 13766798
Alignment:
Q  136 cacattggaacaagaacaatcacataaatgagttgtacattgcattttaacccaaaaccttaagacatcgaatttatgggtcctctca--tttatatatt 233  Q
    |||||||| ||| ||||||||||| ||| |||||  |||   ||||||||| |||||||||||| ||| || |||||  ||| |||||  |||||| | |    
T  13766934 cacattgggacatgaacaatcacacaaaagagttagacaccacattttaacacaaaaccttaagtcattgagtttattagtcatctcacttttataaaat 13766835  T
Q  234 tctcaaccttcacttttctaaacaatgtgaaacttct 270  Q
      ||||||| |||||||||||||||||| | ||||||    
T  13766834 aatcaacctccacttttctaaacaatgttagacttct 13766798  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 13091823 - 13091875
Alignment:
Q  178 cattttaacccaaaaccttaagacatcgaatttatgggtcctctcatttatat 230  Q
    ||||||| | |||||||||||||||| || ||||||||| |||||||||||||    
T  13091823 cattttagcacaaaaccttaagacattgagtttatgggttctctcatttatat 13091875  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 268
Target Start/End: Original strand, 2803204 - 2803308
Alignment:
Q  164 tgagttgtacattgcattttaacccaaaaccttaagacatcgaatttatgggtcctctcatttatatatttctcaaccttcacttttctaaacaatgtga 263  Q
    ||||||| ||||  || ||| ||||||||| |||||||||  | |||||||||| |||| |||||| | |  ||||||| ||||| | ||||||||||||    
T  2803204 tgagttggacatcacacttttacccaaaacgttaagacattaagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaacaatgtga 2803303  T
Q  264 aactt 268  Q
     ||||    
T  2803304 gactt 2803308  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 230
Target Start/End: Complemental strand, 31053537 - 31053453
Alignment:
Q  147 aagaacaatcacataaatgag-ttgtacattgcattttaacccaaaaccttaagacatcgaatttatgggtcctctcatttatat 230  Q
    ||||||||||||| ||||||  ||| |||||  ||||| |||||||||||| ||| || || |||||||||| ||||| ||||||    
T  31053537 aagaacaatcacacaaatgaaattggacattaaattttcacccaaaaccttgagatattgagtttatgggtcatctcacttatat 31053453  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 33561510 - 33561554
Alignment:
Q  185 acccaaaaccttaagacatcgaatttatgggtcctctcatttata 229  Q
    ||||||||||||||||||  || |||||||||||||||| |||||    
T  33561510 acccaaaaccttaagacaatgagtttatgggtcctctcacttata 33561554  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 260
Target Start/End: Original strand, 8240611 - 8240738
Alignment:
Q  133 atccacattggaacaagaacaatcacataaatgagttgtacattgcattttaacccaaaaccttaagacatcgaatttatgggtcctctcatttatatat 232  Q
    |||||| ||||| ||||||||| ||||||||||||||| | |   ||| |||||| || ||||||||  || |||||||||  || | ||| |||||| |    
T  8240611 atccacgttggaccaagaacaaccacataaatgagttggataccacatcttaacctaataccttaagttattgaatttatgactcgtttcacttatatct 8240710  T
Q  233 ttctcaaccttcacttttctaaacaatg 260  Q
    |  |||||||||||||||  ||||||||    
T  8240711 tgttcaaccttcactttttcaaacaatg 8240738  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 30737656 - 30737718
Alignment:
Q  164 tgagttgtacattgcattttaacccaaaaccttaagacatcgaatttatgggtcctctcattt 226  Q
    ||||||| |||  ||| ||||||||||||||||| ||||| |  |||||||||||||||||||    
T  30737656 tgagttggacaccgcactttaacccaaaaccttatgacattgggtttatgggtcctctcattt 30737718  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 11442952 - 11442895
Alignment:
Q  185 acccaaaaccttaagacatcgaatttatgggtcctctcatttatatatttctcaacct 242  Q
    ||||||||||||||| ||| || |||||||||||||||| || ||| || ||||||||    
T  11442952 acccaaaaccttaaggcattgagtttatgggtcctctcacttgtatgttgctcaacct 11442895  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 40991855 - 40991775
Alignment:
Q  182 ttaacccaaaaccttaagacatcgaatttatgggtcctctcatttatatatttctcaaccttcacttttctaaacaatgtg 262  Q
    ||||||||||||||| || ||| |  |||||||||||||||| ||||  | |  ||||||| ||||||||||| |||||||    
T  40991855 ttaacccaaaaccttgaggcattgggtttatgggtcctctcacttatgaagtgttcaacctccacttttctaagcaatgtg 40991775  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 760286 - 760220
Alignment:
Q  187 ccaaaaccttaagacatcgaatttatgggtcctctcatttatatatttctcaaccttcacttttcta 253  Q
    |||||| |||||| ||  || |||||||||||||||| ||||| | ||||||||||||| |||||||    
T  760286 ccaaaatcttaaggcaatgagtttatgggtcctctcacttataaagttctcaaccttcatttttcta 760220  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 30788369 - 30788285
Alignment:
Q  133 atccacattggaacaagaacaatcacataaatgagttgtacattgcattttaacccaaaaccttaagacatcgaatttatgggtc 217  Q
    |||||||||||  ||||| ||| |||  || ||||||| |||   ||| |||||||||||||||||||||| | |||||||||||    
T  30788369 atccacattgggtcaagagcaaccactcaattgagttgaacaccacatcttaacccaaaaccttaagacattggatttatgggtc 30788285  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 34544201 - 34544137
Alignment:
Q  189 aaaaccttaagacatcgaatttatgggtcctctcatttatatatttctcaaccttcacttttcta 253  Q
    ||||||||||| ||  || |||||||||||||||||||||| | |  ||||||| ||||||||||    
T  34544201 aaaaccttaaggcaatgagtttatgggtcctctcatttataaagtgatcaacctccacttttcta 34544137  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 23716031 - 23716076
Alignment:
Q  208 tttatgggtcctctcatttatatatttctcaaccttcacttttcta 253  Q
    |||||||||||||||| ||||||||| |||||  ||||||||||||    
T  23716031 tttatgggtcctctcacttatatattactcaaaattcacttttcta 23716076  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 4958317 - 4958252
Alignment:
Q  185 acccaaaaccttaagacatcgaatttatgggtcctctcatttatatatttctcaaccttcactttt 250  Q
    |||||||| ||||||||||  | ||||||||||||| ||||||||||||  ||||| || ||||||    
T  4958317 acccaaaatcttaagacatgaagtttatgggtcctcacatttatatattgttcaacatttactttt 4958252  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 10498850 - 10498898
Alignment:
Q  182 ttaacccaaaaccttaagacatcgaatttatgggtcctctcatttatat 230  Q
    |||||||||||| ||||||||| || ||||| | |||||||||||||||    
T  10498850 ttaacccaaaactttaagacattgagtttatagttcctctcatttatat 10498898  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 20117252 - 20117208
Alignment:
Q  186 cccaaaaccttaagacatcgaatttatgggtcctctcatttatat 230  Q
    |||||||||||||||||| ||||||||| || |||||| ||||||    
T  20117252 cccaaaaccttaagacattgaatttatgagtactctcacttatat 20117208  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 50329388 - 50329428
Alignment:
Q  182 ttaacccaaaaccttaagacatcgaatttatgggtcctctc 222  Q
    |||||||||||||||||| ||| | ||||||||||||||||    
T  50329388 ttaacccaaaaccttaaggcattggatttatgggtcctctc 50329428  T

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