View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4529-Insertion-7 (Length: 270)
Name: NF4529-Insertion-7
Description: NF4529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4529-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 5e-68; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 68 - 266
Target Start/End: Complemental strand, 40388436 - 40388238
Alignment:
| Q |
68 |
attgctttatgcttccagtgttgatttagttcttgctggtcacgttcatgcttatgaacattcagtgcgcctcttatagtttagcctttattttaatttc |
167 |
Q |
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| T |
40388436 |
attgctttatgctgctagtgttgatttagttcttgctggtcatgttcatgcttatgaacgttcgatacaccttttatagtttagcctttattttaatttc |
40388337 |
T |
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| Q |
168 |
taagcacgatttaatggaaatttaacggaagattggatccatgtggcatcgtccatataactactggtgatggtggaaaccaagaaggcttagctcata |
266 |
Q |
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| T |
40388336 |
taagcacgatttaatggaaatttaatggaagattggatcctggtggcgccgtccagataactattggtgatggtggaaaccgagaaggcttagctcata |
40388238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 40335621 - 40335439
Alignment:
| Q |
8 |
gtataatagtaacaaggctcaccaaggtgcaatggatgatatgatggcagtcatggagccattgctttatgcttccagtgttgatttagttcttgctggt |
107 |
Q |
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| T |
40335621 |
gtataatagtaacaaggctcaccaaggtgcaggggatgatatgatgacagtcatggagccattgctgtatgctgccagtgttgatttagttcttgctgga |
40335522 |
T |
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| Q |
108 |
cacgttcatgcttatgaacattcagtgcgcctcttatagtttagcctttattttaatttctaagcacgatttaatggaaattt |
190 |
Q |
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| T |
40335521 |
catgttcatgcttatgaacgttcggtaggccttttatattttagcctttattttaatttctaagcacaatttaatggaaattt |
40335439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 27 - 207
Target Start/End: Complemental strand, 40378346 - 40378166
Alignment:
| Q |
27 |
caccaaggtgcaatggatgatatgatggcagtcatggagccattgctttatgcttccagtgttgatttagttcttgctggtcacgttcatgcttatgaac |
126 |
Q |
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| T |
40378346 |
caccaaagtgcaggggatgatatgatgacagtcatggagccattcctttatgctgccagtgttgatttagttcttgctggtcatgttcatgcttatgaac |
40378247 |
T |
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| Q |
127 |
attcagtgcgcctcttatagtttagcctttattttaatttctaagcacgatttaatggaaatttaacggaagattggatcc |
207 |
Q |
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| T |
40378246 |
attcgatacgccttttatagtttagcctttattttaatctctaagcccgatttaatggaaatttaatgaaagattggatcc |
40378166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 40335392 - 40335320
Alignment:
| Q |
194 |
ggaagattggatccatgtggcatcgtccatataactactggtgatggtggaaaccaagaaggcttagctcata |
266 |
Q |
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| T |
40335392 |
ggaagattggatccttgtggcgctgtccatataactattggtgatggtggaaaccgagaaggcttagctcata |
40335320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 20218766 - 20218648
Alignment:
| Q |
8 |
gtataatagtaacaaggctcaccaaggtgcaatggatgatatgatggcagtcatggagccattgctttatgcttccagtgttgatttagttcttgctggt |
107 |
Q |
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|||||||||||||| ||||| ||||||| | | ||||||||||| | |||||||||||||||||||||| | || || ||||||||| |||||||| |
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| T |
20218766 |
gtataatagtaacacagctcatcaaggtgaaggtggtgatatgatggaaaccatggagccattgctttatgctgctagcgtagatttagtttttgctggt |
20218667 |
T |
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| Q |
108 |
cacgttcatgcttatgaac |
126 |
Q |
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| T |
20218666 |
catgtccacgcatatgaac |
20218648 |
T |
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