View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4529_high_1 (Length: 435)
Name: NF4529_high_1
Description: NF4529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4529_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 13 - 412
Target Start/End: Complemental strand, 53820598 - 53820199
Alignment:
| Q |
13 |
gagatgaatcaaagttagttatatatttaaaagctaagaagaagttgagtaaggaaattgagaaactagtttctggaatccgttgtgtgaatctgaatgt |
112 |
Q |
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| T |
53820598 |
gagatgaatcaaagttagttatatatttaaaagctaagaagaagttgagtaaggaaattgagaaactagtttctggaatccgttgtgtgaatctgaatgt |
53820499 |
T |
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| Q |
113 |
cacacaacaacaacaattgcatgttcctgtttattcatcttcaccaacgttgttgtcagtttcagatagtgttgaacttggacgtgtgattgaagatgtt |
212 |
Q |
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| T |
53820498 |
cacacaacaacaacaattgcatgttcctgtttattcatcttcaccaacgttgttgtcagtttcagatagtgttgaacttggacgtgtgattgaagatgtt |
53820399 |
T |
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| Q |
213 |
atgagtttaacggtttctgtatccgttgcatttttcaacggggtagcaatgtcatttgcttcgaagagattttcatgggtgaaaatggttagaaaaggtg |
312 |
Q |
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| T |
53820398 |
atgagtttaacggtttctgtatccgttgcatttttcaacggggtagcaatgtcatttgcttcgaagagattttcatgggtgaaaatggttagaaaaggtg |
53820299 |
T |
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| Q |
313 |
ggagtgtgaagaaggagttggaagggattgaagaaattcagaaggttttgaatgaggttgaaaatattgggaatttgaaaaagaaaggagatgaagaagt |
412 |
Q |
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| T |
53820298 |
ggagtgtgaagaaggagttagaagggattgaagaaattcagaaggttttgaatgaggttgaaaatattgggaatttgaaaaagaaaggagatgaagaagt |
53820199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 32337189 - 32337229
Alignment:
| Q |
372 |
gaaaatattgggaatttgaaaaagaaaggagatgaagaagt |
412 |
Q |
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| T |
32337189 |
gaaaatattgggaatttgaaaaagaaagaagatgaagaagt |
32337229 |
T |
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