View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4529_high_2 (Length: 382)
Name: NF4529_high_2
Description: NF4529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4529_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 40165436 - 40165337
Alignment:
| Q |
19 |
atcccaagtttccaactttattttaatttttaagaaaattaacagcagaattagaatcttaaatgatcctcatgttgttgacaacaatcaaggatcatgg |
118 |
Q |
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| T |
40165436 |
atcccaactttccaactttattttaatttttaagaaaaataacagtagaattagaatcttaaatgatcctcatgttgttgacaacaatcaatgatcatgg |
40165337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 40165250 - 40165206
Alignment:
| Q |
73 |
aatcttaaatgatcctcatgttgttgacaacaatcaaggatcatg |
117 |
Q |
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| T |
40165250 |
aatcttaaatgatcctcatgtttttgacagcaatcaaggatcatg |
40165206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 45455801 - 45455903
Alignment:
| Q |
19 |
atcccaagtttccaactttattttaatttttaagaaaattaacagcagaattagaatcttaaatgatcctcatgttgttgacaacaatcaaggatcatgg |
118 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
45455801 |
atcccaagtttccaactttattttaatttttttgaaaattaacagtagaattagaatcttaaatgattctcatgttgttgacaacaatcaatgatcatgg |
45455900 |
T |
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| Q |
119 |
aat |
121 |
Q |
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||| |
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| T |
45455901 |
aat |
45455903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 7827154 - 7827204
Alignment:
| Q |
73 |
aatcttaaatgatcctcatgttgttgacaacaatcaaggatcatggaatag |
123 |
Q |
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| T |
7827154 |
aatcttaattgatcctcaagttgttgtcaacaatcaacgatcatggaatag |
7827204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 372
Target Start/End: Original strand, 28362531 - 28362560
Alignment:
| Q |
343 |
atatcatattcttcttggttgtccctctct |
372 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
28362531 |
atatcatattcttcttggttgtccctctct |
28362560 |
T |
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