View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4529_low_5 (Length: 313)
Name: NF4529_low_5
Description: NF4529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4529_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 7e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 123 - 295
Target Start/End: Complemental strand, 2606350 - 2606179
Alignment:
| Q |
123 |
aggaaaccacaatattacccaattattttcttcatataggagacctaaataattcattatacataatatatgttgttagtagaactgaatgatatcaatg |
222 |
Q |
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| T |
2606350 |
aggaaaccagaatattacccaattattttcttcatataggagacctaaataattcattatacataatatatgttgttagtagaactgaatgatatcaatg |
2606251 |
T |
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| Q |
223 |
ttaaaccaagtgttaaagaccgctaaatgccaatttacaattattattttttgtacaatttattcaactttat |
295 |
Q |
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| T |
2606250 |
ttaaaccaagtg-taaagaccgctaaatgccaatttacaattattattttttgtacaatttattcaactttat |
2606179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 195 - 295
Target Start/End: Complemental strand, 2607785 - 2607684
Alignment:
| Q |
195 |
ttgttagtagaactgaatgatatcaatgttaaaccaagtg-ttaaagaccgctaaatgccaatttacaattattattttttgtacaatttattcaacttt |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| |||||||||||||||| |||||| |
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| T |
2607785 |
ttgttagtagaactgaatgatatcaatgttaaaccaagtgtttaaagactactaaatgccaatgtacaattattatattttgtacaatttattgaacttt |
2607686 |
T |
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| Q |
294 |
at |
295 |
Q |
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|| |
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| T |
2607685 |
at |
2607684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 2606456 - 2606384
Alignment:
| Q |
14 |
aggtaattgaataaaaattgacacccaattagaggcggattcaccgtgtggctgagtgtagctatagctgcac |
86 |
Q |
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| T |
2606456 |
aggtaattggataaaaactgacatccaattagaggcggattcatcgtgtggctgagtgtagctatagccgcac |
2606384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 26736337 - 26736400
Alignment:
| Q |
135 |
tattacccaattattttcttcatataggagacctaaataattcattatacataatatatgttgt |
198 |
Q |
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|||||||||||| ||||||||||||| |||| |||||||| ||||||| |||||||||||| |
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| T |
26736337 |
tattacccaatttttttcttcatatactagacttaaataatgcattatatgcaatatatgttgt |
26736400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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