View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4529_low_8 (Length: 215)
Name: NF4529_low_8
Description: NF4529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4529_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 3e-96; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 33995769 - 33995950
Alignment:
| Q |
20 |
cgtgtgacaggaaattaaagagttacggcatggaatatacatggtggtgtagaatggccaaattaacttttaattagtcttcatataagtggggtagaat |
119 |
Q |
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| T |
33995769 |
cgtgtgacaggaaattaaagagttacggcatggaatatacatggtggtgtagaatggccaaattaacttttaattagtcttcatataagtggggtagaat |
33995868 |
T |
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| Q |
120 |
ttggaaacaagttgaatacaatgtagcaagtagcaatggtgggtaggagagtaagacagttaaatatgttgactagaataat |
201 |
Q |
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| T |
33995869 |
ttggaaacaagttgaatacaatgtagcaagtagcaatgttgggtaggagagtaagacagttaaatatgttgactagaataat |
33995950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 46 - 137
Target Start/End: Original strand, 34000551 - 34000643
Alignment:
| Q |
46 |
ggcatggaatatacatggtggtgtagaatggccaaattaacttttaattagtcttcatataagt-ggggtagaatttggaaacaagttgaata |
137 |
Q |
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| T |
34000551 |
ggcatgaaatatatgtggtggtgtaggatgaccaaattgacttttaattagtctttatataagtgggggtagaatttgggaacaagttgaata |
34000643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 34008396 - 34008499
Alignment:
| Q |
31 |
aaattaaagagttacggcatggaatatacatggtggtgtagaatggccaaattaacttttaattagtcttcatataagt-ggggtagaatttggaaacaa |
129 |
Q |
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| T |
34008396 |
aaattaaagcgtta-ggcatgaagcataaatggtggtgtagaatgaccgaattaactttgaattagtcttgatataagtgggggtagaatttggaaataa |
34008494 |
T |
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| Q |
130 |
gttga |
134 |
Q |
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| T |
34008495 |
gttga |
34008499 |
T |
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