View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4530-Insertion-3 (Length: 710)

Name: NF4530-Insertion-3
Description: NF4530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4530-Insertion-3
NF4530-Insertion-3
[»] chr4 (50 HSPs)
chr4 (282-525)||(756483-756726)
chr4 (286-527)||(702467-702708)
chr4 (286-527)||(770766-771007)
chr4 (288-519)||(16039503-16039734)
chr4 (286-519)||(35060278-35060511)
chr4 (284-416)||(35055331-35055463)
chr4 (286-416)||(701633-701763)
chr4 (286-416)||(769932-770062)
chr4 (285-416)||(757427-757558)
chr4 (285-377)||(16038274-16038366)
chr4 (285-361)||(36220583-36220659)
chr4 (286-361)||(11038577-11038652)
chr4 (287-374)||(4890827-4890915)
chr4 (285-352)||(51645963-51646030)
chr4 (283-364)||(44303512-44303593)
chr4 (285-361)||(40681484-40681560)
chr4 (595-637)||(702033-702075)
chr4 (595-637)||(757110-757152)
chr4 (595-637)||(770332-770374)
chr4 (595-637)||(35055737-35055779)
chr4 (283-372)||(14525909-14525998)
chr4 (283-364)||(25618433-25618514)
chr4 (287-352)||(36219408-36219473)
chr4 (290-355)||(50551403-50551468)
chr4 (304-361)||(51399234-51399291)
chr4 (595-627)||(702411-702443)
chr4 (595-627)||(756759-756791)
chr4 (595-627)||(770710-770742)
chr4 (284-364)||(1098051-1098131)
chr4 (286-374)||(4892081-4892169)
chr4 (595-627)||(16039437-16039469)
chr4 (284-364)||(17475863-17475943)
chr4 (595-627)||(35060215-35060247)
chr4 (284-364)||(41610125-41610205)
chr4 (276-364)||(48453623-48453711)
chr4 (284-372)||(53594982-53595070)
chr4 (285-364)||(20614596-20614675)
chr4 (281-364)||(26673103-26673186)
chr4 (492-527)||(33075036-33075071)
chr4 (285-364)||(42369489-42369568)
chr4 (285-364)||(56271196-56271275)
chr4 (284-365)||(11815858-11815940)
chr4 (286-364)||(17475397-17475475)
chr4 (286-372)||(22679633-22679719)
chr4 (286-364)||(34237927-34238005)
chr4 (297-363)||(48091956-48092022)
chr4 (284-361)||(9091422-9091499)
chr4 (327-376)||(33075186-33075235)
chr4 (280-353)||(41845495-41845568)
chr4 (283-364)||(43291941-43292022)
[»] chr1 (46 HSPs)
chr1 (286-527)||(51599250-51599491)
chr1 (282-479)||(16962006-16962203)
chr1 (286-416)||(51597961-51598091)
chr1 (286-416)||(16963354-16963484)
chr1 (286-355)||(46015846-46015915)
chr1 (284-352)||(33333404-33333472)
chr1 (287-351)||(50682580-50682644)
chr1 (274-364)||(6714190-6714280)
chr1 (285-371)||(29021581-29021667)
chr1 (279-364)||(24370108-24370193)
chr1 (280-364)||(37483048-37483132)
chr1 (285-361)||(46014700-46014776)
chr1 (284-347)||(6242694-6242757)
chr1 (285-364)||(6714683-6714762)
chr1 (285-371)||(16659877-16659963)
chr1 (595-637)||(16963024-16963066)
chr1 (595-637)||(51598362-51598404)
chr1 (283-372)||(5804690-5804779)
chr1 (283-364)||(14244540-14244621)
chr1 (286-371)||(24326582-24326667)
chr1 (284-364)||(3798322-3798402)
chr1 (280-364)||(5598512-5598596)
chr1 (285-361)||(36143118-36143194)
chr1 (280-364)||(44114498-44114582)
chr1 (284-364)||(46448721-46448801)
chr1 (282-354)||(47113104-47113176)
chr1 (284-364)||(50227894-50227974)
chr1 (595-627)||(51599192-51599224)
chr1 (280-360)||(51902248-51902328)
chr1 (285-364)||(3798690-3798769)
chr1 (285-372)||(6328302-6328389)
chr1 (285-352)||(33332176-33332243)
chr1 (285-364)||(38980034-38980113)
chr1 (285-347)||(6241252-6241314)
chr1 (286-364)||(7334443-7334521)
chr1 (282-360)||(15073911-15073989)
chr1 (286-372)||(35368856-35368941)
chr1 (283-361)||(38902431-38902509)
chr1 (286-364)||(38979671-38979749)
chr1 (282-364)||(45678708-45678790)
chr1 (286-364)||(50138495-50138573)
chr1 (299-365)||(51241737-51241803)
chr1 (286-371)||(24332287-24332372)
chr1 (299-364)||(33784601-33784666)
chr1 (299-364)||(34023554-34023619)
chr1 (299-364)||(46448230-46448295)
[»] chr8 (45 HSPs)
chr8 (280-519)||(39568333-39568572)
chr8 (288-538)||(44633580-44633830)
chr8 (282-527)||(45378369-45378610)
chr8 (358-527)||(39269491-39269662)
chr8 (282-416)||(39270722-39270856)
chr8 (285-416)||(39567062-39567193)
chr8 (280-416)||(44632700-44632836)
chr8 (595-675)||(44633449-44633528)
chr8 (285-361)||(9311020-9311096)
chr8 (291-374)||(22191876-22191958)
chr8 (278-371)||(22594310-22594403)
chr8 (286-341)||(14816570-14816625)
chr8 (286-341)||(14829115-14829170)
chr8 (286-337)||(45377427-45377478)
chr8 (289-355)||(9312165-9312231)
chr8 (285-364)||(43633122-43633201)
chr8 (595-637)||(39567461-39567503)
chr8 (282-364)||(41154994-41155076)
chr8 (283-364)||(22013459-22013540)
chr8 (284-364)||(2221592-2221672)
chr8 (280-372)||(9115595-9115687)
chr8 (299-371)||(13462119-13462191)
chr8 (320-372)||(21015213-21015265)
chr8 (280-364)||(27786465-27786549)
chr8 (280-364)||(31445663-31445747)
chr8 (595-627)||(39269687-39269719)
chr8 (284-364)||(45123218-45123298)
chr8 (595-627)||(45378302-45378334)
chr8 (285-352)||(10134607-10134674)
chr8 (285-364)||(11713199-11713278)
chr8 (286-361)||(13463131-13463206)
chr8 (284-371)||(16906437-16906524)
chr8 (285-364)||(43086865-43086944)
chr8 (326-372)||(2633803-2633849)
chr8 (278-364)||(11713550-11713636)
chr8 (285-323)||(14819391-14819429)
chr8 (595-637)||(39270444-39270486)
chr8 (286-364)||(41154617-41154695)
chr8 (286-364)||(42193779-42193857)
chr8 (595-637)||(45377513-45377555)
chr8 (299-372)||(8000764-8000837)
chr8 (299-372)||(16905268-16905341)
chr8 (299-364)||(40229103-40229168)
chr8 (280-365)||(44553122-44553207)
chr8 (283-364)||(45466273-45466354)
[»] scaffold0031 (6 HSPs)
scaffold0031 (285-527)||(123423-123665)
scaffold0031 (285-527)||(134299-134541)
scaffold0031 (285-416)||(129347-129478)
scaffold0031 (595-637)||(129017-129059)
scaffold0031 (595-627)||(123694-123726)
scaffold0031 (595-627)||(134565-134597)
[»] chr6 (31 HSPs)
chr6 (277-527)||(21282808-21283058)
chr6 (286-527)||(5660008-5660249)
chr6 (280-416)||(5659098-5659235)
chr6 (285-416)||(21611914-21612045)
chr6 (292-394)||(21612831-21612933)
chr6 (595-675)||(5659867-5659947)
chr6 (595-675)||(21612422-21612502)
chr6 (595-659)||(21612570-21612634)
chr6 (284-355)||(29751129-29751200)
chr6 (287-372)||(20488261-20488346)
chr6 (286-355)||(29744781-29744850)
chr6 (285-324)||(21283923-21283962)
chr6 (286-372)||(20489413-20489498)
chr6 (424-461)||(21612771-21612808)
chr6 (285-361)||(12260445-12260521)
chr6 (492-527)||(21612691-21612726)
chr6 (285-343)||(14403687-14403745)
chr6 (282-364)||(17383731-17383813)
chr6 (283-364)||(1948620-1948701)
chr6 (282-347)||(29465751-29465816)
chr6 (283-364)||(31739895-31739976)
chr6 (299-371)||(12261463-12261535)
chr6 (299-371)||(27128857-27128929)
chr6 (286-361)||(959300-959375)
chr6 (285-372)||(28866392-28866479)
chr6 (286-364)||(3618781-3618859)
chr6 (286-364)||(21271486-21271564)
chr6 (286-364)||(21272099-21272177)
chr6 (595-637)||(21283582-21283624)
chr6 (286-364)||(22498747-22498825)
chr6 (286-347)||(29467282-29467343)
[»] chr3 (30 HSPs)
chr3 (287-516)||(21815909-21816139)
chr3 (287-416)||(21817328-21817457)
chr3 (285-343)||(20184447-20184505)
chr3 (285-374)||(14859103-14859192)
chr3 (280-355)||(27688480-27688555)
chr3 (285-354)||(39992484-39992553)
chr3 (280-364)||(13355169-13355253)
chr3 (285-343)||(27695576-27695634)
chr3 (284-361)||(20185796-20185873)
chr3 (285-414)||(32304231-32304360)
chr3 (327-371)||(36982691-36982735)
chr3 (327-371)||(37008130-37008174)
chr3 (289-353)||(49221510-49221574)
chr3 (286-365)||(40503711-40503790)
chr3 (285-364)||(45940660-45940739)
chr3 (285-371)||(32305243-32305329)
chr3 (283-372)||(4953405-4953494)
chr3 (286-339)||(17509464-17509517)
chr3 (288-353)||(39991507-39991572)
chr3 (304-365)||(54831873-54831934)
chr3 (285-364)||(12739963-12740042)
chr3 (285-364)||(24242977-24243056)
chr3 (321-372)||(28919124-28919175)
chr3 (492-527)||(36982856-36982891)
chr3 (492-527)||(37008295-37008330)
chr3 (297-364)||(39198428-39198495)
chr3 (280-371)||(42541173-42541264)
chr3 (297-372)||(50530628-50530703)
chr3 (282-352)||(24244765-24244835)
chr3 (286-352)||(43464812-43464878)
[»] chr7 (36 HSPs)
chr7 (285-513)||(21709157-21709386)
chr7 (286-482)||(26025728-26025924)
chr7 (287-416)||(26024888-26025017)
chr7 (285-416)||(21710529-21710660)
chr7 (288-374)||(10990568-10990654)
chr7 (286-366)||(10986695-10986775)
chr7 (288-352)||(45087067-45087131)
chr7 (283-364)||(45457084-45457165)
chr7 (283-364)||(48094837-48094918)
chr7 (280-364)||(31852062-31852146)
chr7 (492-527)||(26025704-26025739)
chr7 (280-347)||(40740046-40740113)
chr7 (595-637)||(21710217-21710259)
chr7 (595-637)||(26025287-26025329)
chr7 (283-361)||(30766667-30766745)
chr7 (286-352)||(45088244-45088310)
chr7 (286-347)||(40738193-40738254)
chr7 (283-364)||(40852140-40852221)
chr7 (283-364)||(45995264-45995345)
chr7 (280-364)||(8090815-8090899)
chr7 (299-371)||(17278412-17278484)
chr7 (595-627)||(21709415-21709447)
chr7 (595-627)||(26025648-26025680)
chr7 (285-365)||(28460964-28461044)
chr7 (299-371)||(30765681-30765753)
chr7 (280-364)||(39143491-39143575)
chr7 (284-364)||(45456732-45456812)
chr7 (285-364)||(7776456-7776535)
chr7 (285-364)||(7776937-7777016)
chr7 (288-347)||(19543492-19543551)
chr7 (286-361)||(26041798-26041873)
chr7 (285-364)||(27284241-27284320)
chr7 (286-364)||(27284589-27284667)
chr7 (299-364)||(18458755-18458820)
chr7 (299-372)||(36720492-36720565)
chr7 (299-364)||(42287324-42287389)
[»] chr2 (30 HSPs)
chr2 (284-372)||(36888336-36888424)
chr2 (284-372)||(36889719-36889807)
chr2 (281-372)||(15044734-15044825)
chr2 (280-374)||(5381530-5381624)
chr2 (286-339)||(3603504-3603557)
chr2 (285-354)||(7184880-7184949)
chr2 (285-342)||(35738362-35738419)
chr2 (285-356)||(34166842-34166914)
chr2 (285-364)||(2822303-2822382)
chr2 (285-364)||(26424804-26424883)
chr2 (287-352)||(13809426-13809491)
chr2 (284-361)||(19297525-19297602)
chr2 (284-364)||(677900-677980)
chr2 (284-364)||(33200026-33200106)
chr2 (304-372)||(38978896-38978964)
chr2 (304-372)||(39109475-39109543)
chr2 (289-361)||(40468049-40468121)
chr2 (299-371)||(40469070-40469142)
chr2 (284-364)||(43820308-43820388)
chr2 (285-364)||(4602797-4602876)
chr2 (281-364)||(13479412-13479495)
chr2 (285-355)||(13810569-13810637)
chr2 (278-361)||(16581577-16581660)
chr2 (286-364)||(11713977-11714055)
chr2 (299-365)||(12602576-12602642)
chr2 (277-371)||(28189438-28189532)
chr2 (286-364)||(34618502-34618580)
chr2 (299-364)||(2822661-2822726)
chr2 (299-364)||(15136856-15136921)
chr2 (283-372)||(36313658-36313747)
[»] scaffold0054 (2 HSPs)
scaffold0054 (282-372)||(57530-57620)
scaffold0054 (285-372)||(57021-57107)
[»] scaffold0029 (2 HSPs)
scaffold0029 (286-352)||(71821-71887)
scaffold0029 (284-353)||(70667-70736)
[»] scaffold0220 (1 HSPs)
scaffold0220 (286-372)||(25963-26049)
[»] chr5 (30 HSPs)
chr5 (282-371)||(25333161-25333250)
chr5 (305-371)||(38384887-38384953)
chr5 (285-353)||(19718881-19718949)
chr5 (280-364)||(24100680-24100764)
chr5 (284-372)||(30112682-30112770)
chr5 (281-364)||(7265594-7265677)
chr5 (285-371)||(28905430-28905516)
chr5 (285-371)||(28941825-28941911)
chr5 (285-371)||(37191592-37191678)
chr5 (285-371)||(37192445-37192531)
chr5 (285-347)||(37966813-37966875)
chr5 (283-364)||(17339792-17339873)
chr5 (286-371)||(30645700-30645785)
chr5 (304-361)||(35463855-35463912)
chr5 (281-361)||(23083563-23083643)
chr5 (305-365)||(42766836-42766896)
chr5 (285-364)||(435553-435632)
chr5 (282-361)||(6793763-6793842)
chr5 (278-361)||(14662355-14662438)
chr5 (285-364)||(16670008-16670087)
chr5 (286-364)||(7265248-7265326)
chr5 (299-365)||(24042658-24042724)
chr5 (286-364)||(27851023-27851101)
chr5 (286-364)||(29962161-29962239)
chr5 (286-364)||(30012559-30012637)
chr5 (286-364)||(38312325-38312403)
chr5 (283-372)||(9050050-9050139)
chr5 (483-516)||(24648582-24648615)
chr5 (299-364)||(27098553-27098618)
chr5 (286-371)||(42767666-42767751)
[»] scaffold0394 (1 HSPs)
scaffold0394 (285-355)||(14269-14340)
[»] scaffold0194 (1 HSPs)
scaffold0194 (284-352)||(19237-19305)
[»] scaffold0006 (2 HSPs)
scaffold0006 (284-364)||(83366-83446)
scaffold0006 (289-364)||(83016-83091)
[»] scaffold0027 (1 HSPs)
scaffold0027 (288-364)||(124939-125015)
[»] scaffold0002 (1 HSPs)
scaffold0002 (286-364)||(283154-283232)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 3e-96; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 282 - 525
Target Start/End: Original strand, 756483 - 756726
Alignment:
Q  282 aaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtctt 381  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | || ||||||||||||||||||     
T  756483 aaaaggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccataattaataaaaagtccgcttaagtcctttaaatatgtctc 756582  T
Q  382 cattacataaattggtccattccgttaattttattnnnnnnncgttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttctt 481  Q
    | |||||||||||||||| ||||||||||||||||        |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  756583 cgttacataaattggtcccttccgttaattttattaaaaaaatgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttctt 756682  T
Q  482 cctcctcaccttcatcttcttcaacaaatcttcataaaaccttc 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  756683 cctcctcaccttcatcttcttcaacaaatcttcataaaaccttc 756726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 286 - 527
Target Start/End: Complemental strand, 702708 - 702467
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcatt 385  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | || |||||||||||||||||| | ||    
T  702708 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccataattaataaaaagtccgcttaagtcctttaaatatgtctccgtt 702609  T
Q  386 acataaattggtccattccgttaattttattnnnnnnncgttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttcttcctc 485  Q
    |||||||||||||| ||||||||||||||||        |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  702608 acataaattggtcccttccgttaattttattaaaaaaatgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctc 702509  T
Q  486 ctcaccttcatcttcttcaacaaatcttcataaaaccttcat 527  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  702508 ctcaccttcatcttcttcaacaaatcttcataaaaccttcat 702467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 286 - 527
Target Start/End: Complemental strand, 771007 - 770766
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcatt 385  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | || |||||||||||||||||| | ||    
T  771007 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccataattaataaaaagtccgcttaagtcctttaaatatgtctccgtt 770908  T
Q  386 acataaattggtccattccgttaattttattnnnnnnncgttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttcttcctc 485  Q
    |||||||||||||| ||||||||||||||||        |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  770907 acataaattggtcccttccgttaattttattaaaaaaatgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctc 770808  T
Q  486 ctcaccttcatcttcttcaacaaatcttcataaaaccttcat 527  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  770807 ctcaccttcatcttcttcaacaaatcttcataaaaccttcat 770766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 288 - 519
Target Start/End: Complemental strand, 16039734 - 16039503
Alignment:
Q  288 cttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcattac 387  Q
    |||||||| |||||| ||||||||||||||||||||| |||| || ||||||||||||||||||||||  ||||||||||||||||||||||| ||||||    
T  16039734 cttaattgctatttttgtcccttaactaattttttggtatcgtttcggtcccataattaataaaaagtccgtttgagtcctttaaatatgtctccattac 16039635  T
Q  388 ataaattggtccattccgttaattttattnnnnnnncgttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttcttcctcct 487  Q
    |||||||||||| ||||||||||||||||       ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16039634 ataaattggtcccttccgttaattttattaaaaaaacgttaactcaaacacacatgtcattttcgcattggttagaatttatattcatcttcttcctcct 16039535  T
Q  488 caccttcatcttcttcaacaaatcttcataaa 519  Q
    ||||||||||||||||||||||||||||||||    
T  16039534 caccttcatcttcttcaacaaatcttcataaa 16039503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 286 - 519
Target Start/End: Complemental strand, 35060511 - 35060278
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcatt 385  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||   ||    
T  35060511 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccataattaataaaaagtccgtttgagtcctttaaatatgtctctgtt 35060412  T
Q  386 acataaattggtccattccgttaattttattnnnnnnncgttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttcttcctc 485  Q
    |||||||||||||| ||||||||||||||||       | ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  35060411 acataaattggtcccttccgttaattttattaaaaaaacattaactcaagcacacgtgtcatttttgcattggttggaatttatattcatcttcttcctc 35060312  T
Q  486 ctcaccttcatcttcttcaacaaatcttcataaa 519  Q
    |||||||||| |||||||||||||||||||||||    
T  35060311 ctcaccttcaccttcttcaacaaatcttcataaa 35060278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 284 - 416
Target Start/End: Original strand, 35055331 - 35055463
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttca 383  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   ||||||||||||||||||||||       
T  35055331 aaggcttaattgttattttcgtcccttaactaattttttggtatcgctttggtcccataattaataaaaagtccatttgagtcctttaaatatgtctctg 35055430  T
Q  384 ttacataaattggtccattccgttaattttatt 416  Q
    ||||||||||||||||  ||||| |||||||||    
T  35055431 ttacataaattggtcccctccgtcaattttatt 35055463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 286 - 416
Target Start/End: Original strand, 701633 - 701763
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcatt 385  Q
    |||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||| | ||    
T  701633 ggcttaattgctattttcgtcccttaacttattttttggtatcgctttggtcccataattaataaaaagtccgtttgagtcctttaaatatgtctccgtt 701732  T
Q  386 acataaattggtccattccgttaattttatt 416  Q
    |||||||||||||| || | | |||||||||    
T  701733 acataaattggtccctttcatcaattttatt 701763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 286 - 416
Target Start/End: Original strand, 769932 - 770062
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcatt 385  Q
    |||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||| | ||    
T  769932 ggcttaattgctattttcgtcccttaacttattttttggtatcgctttggtcccataattaataaaaagtccgtttgagtcctttaaatatgtctccgtt 770031  T
Q  386 acataaattggtccattccgttaattttatt 416  Q
    |||||||||||||| || | | |||||||||    
T  770032 acataaattggtccctttcatcaattttatt 770062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 285 - 416
Target Start/End: Complemental strand, 757558 - 757427
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcat 384  Q
    ||||||||||| ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||| | |    
T  757558 aggcttaattgctattttcatcccttaacttattttttggtatcgctttggtcccataattaataaaaagtcagtttgagtcctttaaatatgtctccgt 757459  T
Q  385 tacataaattggtccattccgttaattttatt 416  Q
    |||||||||| || | |||||| |||||||||    
T  757458 tacataaattagttccttccgtcaattttatt 757427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 285 - 377
Target Start/End: Original strand, 16038274 - 16038366
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatg 377  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |   |||||||||||||||||||    
T  16038274 aggcttaattgttattttcgtcccttaactaattttttggtatcgctttggtcccataattaataaaaaatccatttgagtcctttaaatatg 16038366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 36220659 - 36220583
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgttt 361  Q
    ||||||||||| |||||| || |||||||||||||||||| |||| ||||||||||||| ||| |||||||| ||||    
T  36220659 aggcttaattgctattttagtaccttaactaattttttggtatcgttttggtcccataactaaaaaaaagttcgttt 36220583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 286 - 361
Target Start/End: Original strand, 11038577 - 11038652
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgttt 361  Q
    |||||||||| |||||| |||||||| |||||||||||| || ||||||||||||||| ||| ||||||| |||||    
T  11038577 ggcttaattgctattttagtcccttagctaattttttggtattgctttggtcccataactaaaaaaaagtctgttt 11038652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 287 - 374
Target Start/End: Original strand, 4890827 - 4890915
Alignment:
Q  287 gcttaattgttattttcgtcccttaactaattt-tttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaat 374  Q
    ||||||||| |||||||||||||||| || ||| ||| | |||||||||  || |||| |||||||| |||||||||||||||||||||    
T  4890827 gcttaattgctattttcgtcccttaagtagtttctttagtatcgctttgcccctataagtaataaaaggtttgtttgagtcctttaaat 4890915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 285 - 352
Target Start/End: Complemental strand, 51646030 - 51645963
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaa 352  Q
    ||||||||||| |||||| |||||||| |||||||||||| |||| ||||||||||||| ||| ||||    
T  51646030 aggcttaattgctattttagtcccttagctaattttttggtatcggtttggtcccataactaaaaaaa 51645963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 283 - 364
Target Start/End: Original strand, 44303512 - 44303593
Alignment:
Q  283 aaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||||| |||| |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  44303512 aaaggcttaaatgttcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 44303593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 40681560 - 40681484
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgttt 361  Q
    ||||||||||| | |||||||||||||| | ||| ||||| |||||||||||||| ||| ||| |||||| ||||||    
T  40681560 aggcttaattgctcttttcgtcccttaagttattatttggtatcgctttggtcccttaagtaaaaaaaagattgttt 40681484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 595 - 637
Target Start/End: Complemental strand, 702075 - 702033
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaacccattatcat 637  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  702075 tttacatttatcatatgaaatccaaatctaaaccctttatcat 702033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 595 - 637
Target Start/End: Original strand, 757110 - 757152
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaacccattatcat 637  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  757110 tttacatttatcatatgaaatccaaatctaaaccctttatcat 757152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 595 - 637
Target Start/End: Complemental strand, 770374 - 770332
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaacccattatcat 637  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  770374 tttacatttatcatatgaaatccaaatctaaaccctttatcat 770332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 595 - 637
Target Start/End: Complemental strand, 35055779 - 35055737
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaacccattatcat 637  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  35055779 tttacatttatcatatgaaatccaaatctaaaccctttatcat 35055737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 372
Target Start/End: Complemental strand, 14525998 - 14525909
Alignment:
Q  283 aaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    |||||||||| || | ||||  ||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||| ||||||    
T  14525998 aaaggcttaaatgctcttttgatcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttaa 14525909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 364
Target Start/End: Original strand, 25618433 - 25618514
Alignment:
Q  283 aaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  25618433 aaaggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 25618514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 36219408 - 36219473
Alignment:
Q  287 gcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaa 352  Q
    ||||||||| |||||| ||||||||||||||||||  | |||| ||||||||||||| ||| ||||    
T  36219408 gcttaattgctattttagtcccttaactaatttttgagtatcggtttggtcccataactaaaaaaa 36219473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 355
Target Start/End: Complemental strand, 50551468 - 50551403
Alignment:
Q  290 taattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagt 355  Q
    ||||||||||||| ||||||||| ||||||||||| |||| ||| || |||||| ||| |||||||    
T  50551468 taattgttattttagtcccttaattaattttttggtatcggtttagttccataactaaaaaaaagt 50551403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 361
Target Start/End: Original strand, 51399234 - 51399291
Alignment:
Q  304 gtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgttt 361  Q
    ||||||||| || || ||||| |||||||||||||||||| ||||||||||| |||||    
T  51399234 gtcccttaaatatttatttggtatcgctttggtcccataagtaataaaaagtctgttt 51399291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 627
Target Start/End: Complemental strand, 702443 - 702411
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaac 627  Q
    |||||||||||||||||||||||||||||||||    
T  702443 tttacctttatcatatgaaatccaaatctaaac 702411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 627
Target Start/End: Original strand, 756759 - 756791
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaac 627  Q
    |||||||||||||||||||||||||||||||||    
T  756759 tttacctttatcatatgaaatccaaatctaaac 756791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 627
Target Start/End: Complemental strand, 770742 - 770710
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaac 627  Q
    |||||||||||||||||||||||||||||||||    
T  770742 tttacctttatcatatgaaatccaaatctaaac 770710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 1098051 - 1098131
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  1098051 aaggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 1098131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 286 - 374
Target Start/End: Complemental strand, 4892169 - 4892081
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaat 374  Q
    |||||||||| ||||||| |||||||| |  |||||| | ||||||| |||| ||||| ||||||||  | ||||||||||| ||||||    
T  4892169 ggcttaattgctattttcatcccttaagtttttttttagtatcgcttaggtcgcataagtaataaaagatctgtttgagtcccttaaat 4892081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 627
Target Start/End: Complemental strand, 16039469 - 16039437
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaac 627  Q
    |||||||||||||||||||||||||||||||||    
T  16039469 tttacctttatcatatgaaatccaaatctaaac 16039437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 364
Target Start/End: Complemental strand, 17475943 - 17475863
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  17475943 aaggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 17475863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 627
Target Start/End: Complemental strand, 35060247 - 35060215
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaac 627  Q
    |||||||||||||||||||||||||||||||||    
T  35060247 tttacctttatcatatgaaatccaaatctaaac 35060215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 41610125 - 41610205
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  41610125 aaggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 41610205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 276 - 364
Target Start/End: Original strand, 48453623 - 48453711
Alignment:
Q  276 ttataaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||| |||| |||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  48453623 ttataaataaggtttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 48453711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 372
Target Start/End: Original strand, 53594982 - 53595070
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    ||||||||| ||  ||||| |||| |||| || || ||||| |||||||||||||| ||| ||| |||||| |||||||||| ||||||    
T  53594982 aaggcttaaatgccattttggtcctttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttaa 53595070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 20614675 - 20614596
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  20614675 aggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 20614596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 364
Target Start/End: Complemental strand, 26673186 - 26673103
Alignment:
Q  281 aaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||||||| || | |||| |||||||||||| ||  |||  |||||||||||||| ||| ||| |||||| |||||||||    
T  26673186 aaaaaggcttaaatgctcttttggtcccttaactatttaattgatatcgctttggtcccttaactaaaaaaaagattgtttgag 26673103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 527
Target Start/End: Complemental strand, 33075071 - 33075036
Alignment:
Q  492 ttcatcttcttcaacaaatcttcataaaaccttcat 527  Q
    ||||||||||||| ||||||||||||||||||||||    
T  33075071 ttcatcttcttcatcaaatcttcataaaaccttcat 33075036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 42369568 - 42369489
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  42369568 aggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 42369489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 56271275 - 56271196
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  56271275 aggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 56271196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 284 - 365
Target Start/End: Original strand, 11815858 - 11815940
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataa-ttaataaaaagtttgtttgagt 365  Q
    ||||||||| |||  |||| |||||||||||| || ||||| |||||||||||||| ||| | || |||||| ||||||||||    
T  11815858 aaggcttaaatgtgcttttggtcccttaactatttatttggtatcgctttggtcccttaactaaaaaaaaagattgtttgagt 11815940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 364
Target Start/End: Original strand, 17475397 - 17475475
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  17475397 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 17475475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 372
Target Start/End: Original strand, 22679633 - 22679719
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    ||||||| || | |||| |||||||||||| ||  |||| |||||||| ||||| ||| ||| |||||| |||||||||| ||||||    
T  22679633 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttagtcccttaactaaaaaaaagattgtttgagtactttaa 22679719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 364
Target Start/End: Complemental strand, 34238005 - 34237927
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||| || |||||| |||||||||||| ||  |||| |||| ||||||||| ||| ||| |||||| |||||||||    
T  34238005 ggcttaaatgctattttggtcccttaactatttaattggtatcgttttggtcccttaactaaaaaaaagattgtttgag 34237927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 297 - 363
Target Start/End: Complemental strand, 48092022 - 48091956
Alignment:
Q  297 tattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttga 363  Q
    |||||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| ||||||||    
T  48092022 tattttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttga 48091956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 361
Target Start/End: Original strand, 9091422 - 9091499
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgttt 361  Q
    ||||||||| || | |||| ||||||||| || || ||||| |||||||||||||| ||| ||| |||||| ||||||    
T  9091422 aaggcttaaatgctcttttggtcccttaagtatttatttggaatcgctttggtcccttaactaaaaaaaagattgttt 9091499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 327 - 376
Target Start/End: Complemental strand, 33075235 - 33075186
Alignment:
Q  327 tcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatat 376  Q
    ||||||||||||||||| |||||||||||  |||||||| ||||| ||||    
T  33075235 tcgctttggtcccataagtaataaaaagtccgtttgagtactttacatat 33075186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 280 - 353
Target Start/End: Original strand, 41845495 - 41845568
Alignment:
Q  280 aaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaa 353  Q
    |||| |||||||| || | |||| |||||||||||||||  |||| |||||||||||||| ||| ||| |||||    
T  41845495 aaaataggcttaaatgctcttttggtcccttaactaattaattggtatcgctttggtcccttaactaaaaaaaa 41845568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 283 - 364
Target Start/End: Complemental strand, 43292022 - 43291941
Alignment:
Q  283 aaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||||| || | |||| |||||||||||| ||  |||| ||| |||||||||| ||| ||| |||||| |||||||||    
T  43292022 aaaggcttaaatgctcttttggtcccttaactatttaattggtatcactttggtcccttaactaaaaaaaagattgtttgag 43291941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 177; Significance: 5e-95; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 286 - 527
Target Start/End: Complemental strand, 51599491 - 51599250
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcatt 385  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||  |||||||| |||||||||||||||| ||    
T  51599491 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttgatcctataattaataaaaagtccgtttgagttctttaaatatgtcttcgtt 51599392  T
Q  386 acataaattggtccattccgttaattttattnnnnnnncgttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttcttcctc 485  Q
    |||||||||||||| ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  51599391 acataaattggtcccttccgttaattttattaaaaaaacgttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttcttccaa 51599292  T
Q  486 ctcaccttcatcttcttcaacaaatcttcataaaaccttcat 527  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  51599291 ctcaccttcatcttcttcaacaaatcttcataaaaccttcat 51599250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 282 - 479
Target Start/End: Original strand, 16962006 - 16962203
Alignment:
Q  282 aaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtctt 381  Q
    |||||||||||||| |||||| ||||||||||||||||||||| || |||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  16962006 aaaaggcttaattgctatttttgtcccttaactaattttttggtattgctttggtcctataattaataaaaagtctgtttgagtcctttaaatatgtctt 16962105  T
Q  382 cattacataaattggtccattccgttaattttattnnnnnnncgttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttc 479  Q
    | |||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16962106 cgttacataaattggtcccttccgttaattttattaaaaaaatgttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttc 16962203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 286 - 416
Target Start/End: Original strand, 51597961 - 51598091
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcatt 385  Q
    |||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||| | ||    
T  51597961 ggcttaattgctattttcgtcccttaacttattttttggtatcgctttggtcccataattaataaaaagtccgtttgagtcctttaaatatgtctccgtt 51598060  T
Q  386 acataaattggtccattccgttaattttatt 416  Q
    |||||||||||||| |||||| |||||||||    
T  51598061 acataaattggtcccttccgtcaattttatt 51598091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 286 - 416
Target Start/End: Complemental strand, 16963484 - 16963354
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcatt 385  Q
    |||||||||||||||||||| |||||||||||||||||| |||| ||||||| ||||||||||||||||||  |||||||||||||||||||||| | ||    
T  16963484 ggcttaattgttattttcgttccttaactaattttttggtatcgatttggtctcataattaataaaaagttcatttgagtcctttaaatatgtctccgtt 16963385  T
Q  386 acataaattggtccattccgttaattttatt 416  Q
    ||||||| |||||| |||||| |||||||||    
T  16963384 acataaactggtcccttccgtcaattttatt 16963354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 46015915 - 46015846
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagt 355  Q
    ||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| ||| |||||||    
T  46015915 ggcttaattgttattttagtcccttaagtaattttttggtatcgctttggtcccataactaaaaaaaagt 46015846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 33333472 - 33333404
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaa 352  Q
    |||| ||||||| |||||| ||||||||||||||||||||| |||  ||||||||||||||||| ||||    
T  33333472 aaggtttaattgctattttagtcccttaactaattttttggtatcagtttggtcccataattaaaaaaa 33333404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 287 - 351
Target Start/End: Complemental strand, 50682644 - 50682580
Alignment:
Q  287 gcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaa 351  Q
    ||||||||| |||||| ||||||||| || |||||||| |||||||||||||||||| |||||||    
T  50682644 gcttaattgctattttggtcccttaattatttttttggtatcgctttggtcccataaataataaa 50682580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 274 - 364
Target Start/End: Original strand, 6714190 - 6714280
Alignment:
Q  274 ttttataaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||||||||||||||| || | |||| |||| ||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  6714190 ttttataaaaaaggcttaaatgctcttttggtccgttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 6714280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 285 - 371
Target Start/End: Original strand, 29021581 - 29021667
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    |||||||| |||  |||| |||||||||||| || ||||| |||||||||||||| ||| ||| |||||| |||||||||| |||||    
T  29021581 aggcttaaatgtgtttttggtcccttaactatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtacttta 29021667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 279 - 364
Target Start/End: Original strand, 24370108 - 24370193
Alignment:
Q  279 taaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  24370108 taaaaaaggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 24370193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 280 - 364
Target Start/End: Original strand, 37483048 - 37483132
Alignment:
Q  280 aaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  37483048 aaaaaaggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 37483132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 46014700 - 46014776
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgttt 361  Q
    ||||||||||| |||||| |||  |||||||||||||||| ||||||| | |||||||| ||| ||||||| |||||    
T  46014700 aggcttaattgctattttagtcatttaactaattttttggtatcgcttcgatcccataactaaaaaaaagtctgttt 46014776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 284 - 347
Target Start/End: Complemental strand, 6242757 - 6242694
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaa 347  Q
    |||||||||||| ||||||| ||||||||||||||  || | |||||||||||||| |||||||    
T  6242757 aaggcttaattgatattttcatcccttaactaattaattagtatcgctttggtcccttaattaa 6242694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 6714762 - 6714683
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||||||| |||||| |||||||||    
T  6714762 aggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaattaaaaaaaagattgtttgag 6714683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 285 - 371
Target Start/End: Complemental strand, 16659963 - 16659877
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    |||||||| |||| |||| ||||||||| || || ||||| |||||||||||||| ||| ||| |||||  |||||||||| |||||    
T  16659963 aggcttaaatgttcttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaaaattgtttgagtacttta 16659877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 595 - 637
Target Start/End: Original strand, 16963024 - 16963066
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaacccattatcat 637  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  16963024 tttacatttatcatatgaaatccaaatctaaaccctttatcat 16963066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 595 - 637
Target Start/End: Complemental strand, 51598404 - 51598362
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaacccattatcat 637  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  51598404 tttacatttatcatatgaaatccaaatctaaaccctttatcat 51598362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 372
Target Start/End: Original strand, 5804690 - 5804779
Alignment:
Q  283 aaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    |||||||||| || | |||| ||||||||| || || ||||| |||||||||||||| ||| ||| |||||| |||||| ||| ||||||    
T  5804690 aaaggcttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttcagtactttaa 5804779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 364
Target Start/End: Complemental strand, 14244621 - 14244540
Alignment:
Q  283 aaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  14244621 aaaggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 14244540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 286 - 371
Target Start/End: Original strand, 24326582 - 24326667
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    ||||||| || | |||| |||||||||||| || ||||| |||||||||||||| ||| ||| |||||| || ||||||| |||||    
T  24326582 ggcttaaatgctcttttggtcccttaactatttatttggtatcgctttggtcccttaactaaaaaaaagattatttgagtacttta 24326667  T

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Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 3798322 - 3798402
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  3798322 aaggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 3798402  T

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Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 280 - 364
Target Start/End: Original strand, 5598512 - 5598596
Alignment:
Q  280 aaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||||||||| || | |||| ||| |||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  5598512 aaaaaaggcttaaatgctcttttggtcgcttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 5598596  T

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Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 36143194 - 36143118
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgttt 361  Q
    ||||||||||| | |||||||||||||| | ||| ||||| |||| ||||||||| ||| ||| |||||| ||||||    
T  36143194 aggcttaattgctcttttcgtcccttaagttattatttggtatcgatttggtcccttaagtaaaaaaaagattgttt 36143118  T

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Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 280 - 364
Target Start/End: Complemental strand, 44114582 - 44114498
Alignment:
Q  280 aaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||| |||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  44114582 aaaataggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 44114498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 364
Target Start/End: Complemental strand, 46448801 - 46448721
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  46448801 aaggcttaaatgctcttttagtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 46448721  T

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Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 282 - 354
Target Start/End: Complemental strand, 47113176 - 47113104
Alignment:
Q  282 aaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaag 354  Q
    |||||||||||||| | |||||||||||||| | ||| ||||| ||||||||| |||| ||| ||| ||||||    
T  47113176 aaaaggcttaattgctcttttcgtcccttaagttattatttggtatcgctttgatcccttaagtaaaaaaaag 47113104  T

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Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 364
Target Start/End: Complemental strand, 50227974 - 50227894
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  50227974 aaggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 50227894  T

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Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 627
Target Start/End: Complemental strand, 51599224 - 51599192
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaac 627  Q
    |||||||||||||||||||||||||||||||||    
T  51599224 tttacctttatcatatgaaatccaaatctaaac 51599192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 280 - 360
Target Start/End: Complemental strand, 51902328 - 51902248
Alignment:
Q  280 aaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtt 360  Q
    ||||||||||||| ||||||||| |||| ||||||| ||  |||| |||||||||||| | ||| ||| |||||| |||||    
T  51902328 aaaaaaggcttaaatgttattttggtcctttaactatttaattggtatcgctttggtctcttaactaaaaaaaagattgtt 51902248  T

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Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 3798769 - 3798690
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  3798769 aggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 3798690  T

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Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 372
Target Start/End: Complemental strand, 6328389 - 6328302
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    ||||||||||| | |||| ||||||||| || ||  |||| |||||||||||||| ||| ||| |||||| |||||| ||| ||||||    
T  6328389 aggcttaattgctcttttggtcccttaagtatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttcagtactttaa 6328302  T

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Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 33332176 - 33332243
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaa 352  Q
    ||||||||||| |||||| ||| |||||||| || ||||| |||| ||||||||||||| ||| ||||    
T  33332176 aggcttaattgctattttagtctcttaactagttgtttggtatcggtttggtcccataactaaaaaaa 33332243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 38980113 - 38980034
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  38980113 aggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 38980034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 347
Target Start/End: Original strand, 6241252 - 6241314
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaa 347  Q
    ||||||||||  ||||||||| ||||||||| || ||| | |||||||||||||| |||||||    
T  6241252 aggcttaatttctattttcgttccttaactatttatttagtatcgctttggtcccttaattaa 6241314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 364
Target Start/End: Original strand, 7334443 - 7334521
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||| |||  |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  7334443 ggcttaaatgtgtttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 7334521  T

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Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 282 - 360
Target Start/End: Complemental strand, 15073989 - 15073911
Alignment:
Q  282 aaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtt 360  Q
    ||||||||||| || |||||| || ||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||    
T  15073989 aaaaggcttaaatgctattttggttccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtt 15073911  T

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Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 372
Target Start/End: Original strand, 35368856 - 35368941
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    ||||||| || | |||| ||||||||| || ||  |||| |||||||||||||| ||||||| ||||| ||||||||||| ||||||    
T  35368856 ggcttaaatgctcttttggtcccttaaatatttaattggtatcgctttggtcccttaattaa-aaaaaatttgtttgagtactttaa 35368941  T

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Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 283 - 361
Target Start/End: Original strand, 38902431 - 38902509
Alignment:
Q  283 aaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgttt 361  Q
    |||||||||| |||| |||| ||||||| |||| ||  |||| |||||||||||||| ||| ||| |||||| ||||||    
T  38902431 aaaggcttaaatgttcttttggtcccttgactatttaattggaatcgctttggtcccttaactaaaaaaaagattgttt 38902509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 364
Target Start/End: Original strand, 38979671 - 38979749
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  38979671 ggcttaaatgctcttttggtcccttaactatttcattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 38979749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 282 - 364
Target Start/End: Original strand, 45678708 - 45678790
Alignment:
Q  282 aaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||| ||||    
T  45678708 aaaaggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtctgag 45678790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 364
Target Start/End: Original strand, 50138495 - 50138573
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  50138495 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 50138573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 299 - 365
Target Start/End: Original strand, 51241737 - 51241803
Alignment:
Q  299 ttttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagt 365  Q
    |||| ||||||||| || || ||||| |||||||||||||| ||| ||| |||||| ||||||||||    
T  51241737 ttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagt 51241803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 286 - 371
Target Start/End: Complemental strand, 24332372 - 24332287
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    ||||||| || | |||| |||| ||||||| || ||||| |||||||||||||| ||| ||| |||||| || ||||||| |||||    
T  24332372 ggcttaaatgctcttttggtcctttaactatttatttggtatcgctttggtcccttaactaaaaaaaagattatttgagtacttta 24332287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 33784666 - 33784601
Alignment:
Q  299 ttttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  33784666 ttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 33784601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 34023619 - 34023554
Alignment:
Q  299 ttttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  34023619 ttttagtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 34023554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 46448230 - 46448295
Alignment:
Q  299 ttttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  46448230 ttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 46448295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 175; Significance: 7e-94; HSPs: 45)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 280 - 519
Target Start/End: Complemental strand, 39568572 - 39568333
Alignment:
Q  280 aaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtc 379  Q
    ||||||| |||||||| |||||| ||||||||||||||||||| | |||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39568572 aaaaaagtcttaattgctatttttgtcccttaactaattttttagtatcgttttggttccataattaataaaaagtttgtttgagtcctttaaatatgtc 39568473  T
Q  380 ttcattacataaattggtccattccgttaattttattnnnnnnncgttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttc 479  Q
    | | |||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  39568472 tccgttacataaattggtccattccgttaattttattaaaaaaacgttaactcaagcacacgtgtcattttcgcattggttgaaatttatattcatcttc 39568373  T
Q  480 ttcctcctcaccttcatcttcttcaacaaatcttcataaa 519  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39568372 ttcctcctcaccttcatcttcttcaacaaatcttcataaa 39568333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 288 - 538
Target Start/End: Complemental strand, 44633830 - 44633580
Alignment:
Q  288 cttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcattac 387  Q
    |||||||| |||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||   ||||    
T  44633830 cttaattgctattttggttccttaactaattttttggtatcgctttggtcccataattaataaaaagtttatttgagtcctttaaatatgtctcttttac 44633731  T
Q  388 ataaattggtccattccgttaattttattnnnnnnncgttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttcttcctcct 487  Q
    |||||||||||  ||||||||||||||||       ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44633730 ataaattggtctcttccgttaattttattaaaaaaacgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcctcct 44633631  T
Q  488 caccttcatcttcttcaacaaatcttcataaaaccttcattcacctccata 538  Q
    | |||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  44633630 cgccttcatcttcttcaacaaatcttcataaaaccttcatccaccttcata 44633580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 282 - 527
Target Start/End: Complemental strand, 45378610 - 45378369
Alignment:
Q  282 aaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtctt 381  Q
    |||| ||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| | ||||| ||||||||||||||| ||     
T  45378610 aaaaagcttaattgctattttcgtcccttaaataattttttggtatcgctttggtcccataattaataaaaattatgtttcagtcctttaaatatgcctc 45378511  T
Q  382 cattacataaattggtccattccgttaattttattnnnnnnncgttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttctt 481  Q
     |||| ||||||||||| |||||||||||||||||       |||||||||||||    |||||||||||||| |||||||||||||||||||||||| |    
T  45378510 tattatataaattggtctattccgttaattttatt-aaaaaacgttaactcaagcgtgtatgtcattttcgcaatggttggaatttatattcatcttcct 45378412  T
Q  482 cctcctcaccttcatcttcttcaacaaatcttcataaaaccttcat 527  Q
    ||||||||||||||   |||||||||||||||||||||||||||||    
T  45378411 cctcctcaccttca---tcttcaacaaatcttcataaaaccttcat 45378369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 358 - 527
Target Start/End: Original strand, 39269491 - 39269662
Alignment:
Q  358 gtttgagtcctttaaatatgtcttcattacata--aattggtccattccgttaattttattnnnnnnncgttaactcaagcacacatgtcattttcgcat 455  Q
    ||||||||||||||||||||||| | |||||||  ||||||||  ||||||||||||||||       |||||||| |||||||| ||||||||||||||    
T  39269491 gtttgagtcctttaaatatgtctccgttacatataaattggtctcttccgttaattttattaaaaaaacgttaacttaagcacacgtgtcattttcgcat 39269590  T
Q  456 tggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaaaccttcat 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39269591 tggttggaatttatattcatcttcttcctcctcaccttcatcttcttcaacaaatcttcataaaaccttcat 39269662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 282 - 416
Target Start/End: Complemental strand, 39270856 - 39270722
Alignment:
Q  282 aaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtctt 381  Q
    |||||||||||||| |||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||  |||||||||||||||||||||||     
T  39270856 aaaaggcttaattgctattttcgtcccttaacttattttttggtatcgttttggtcccataattaataaaaagtccgtttgagtcctttaaatatgtcta 39270757  T
Q  382 cattacataaattggtccattccgttaattttatt 416  Q
    |||||||||||||||||| |||||| |||||||||    
T  39270756 cattacataaattggtcccttccgtcaattttatt 39270722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 285 - 416
Target Start/End: Original strand, 39567062 - 39567193
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcat 384  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||  ||||||||||||||||||||||   |    
T  39567062 aggcttaattgttattttcgtcccttaactaattttttggtatcgctttggtcccataattgataaaaagttcatttgagtcctttaaatatgtctctgt 39567161  T
Q  385 tacataaattggtccattccgttaattttatt 416  Q
    ||||||||||||||| |||||| |||||||||    
T  39567162 tacataaattggtcccttccgtcaattttatt 39567193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 280 - 416
Target Start/End: Original strand, 44632700 - 44632836
Alignment:
Q  280 aaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtc 379  Q
    |||| ||| ||||||| |||||||||| ||||| ||||||||||| |||| |||||||||| |||||||||||| || ||||||||||||||||||||||    
T  44632700 aaaataggtttaattgctattttcgtctcttaattaattttttggtatcgttttggtcccaaaattaataaaaaattcgtttgagtcctttaaatatgtc 44632799  T
Q  380 ttcattacataaattggtccattccgttaattttatt 416  Q
    | | ||||||||||| || | ||||||||||||||||    
T  44632800 tccgttacataaattagttccttccgttaattttatt 44632836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 595 - 675
Target Start/End: Complemental strand, 44633528 - 44633449
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaacccattatcattttaatttgtgaatttctttaagatttgaaatgactaa 675  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||    
T  44633528 tttacctttatcatatgaaatccaaatctaaacccattatcatttt-atttctgaatttctttaagatttggaatgactaa 44633449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 9311020 - 9311096
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgttt 361  Q
    ||||||||||| |||||| |||||||| |||||||||||| |||||||||||||||||| ||| ||||||| |||||    
T  9311020 aggcttaattgctattttagtcccttatctaattttttggtatcgctttggtcccataactaaaaaaaagtctgttt 9311096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 291 - 374
Target Start/End: Complemental strand, 22191958 - 22191876
Alignment:
Q  291 aattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaat 374  Q
    |||||||||||||||||||||| || |||||| | |||||||||||||| ||| ||||||||||| |||||||||| |||||||    
T  22191958 aattgttattttcgtcccttaagta-ttttttagtatcgctttggtcccgtaagtaataaaaagtctgtttgagtcttttaaat 22191876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 278 - 371
Target Start/End: Original strand, 22594310 - 22594403
Alignment:
Q  278 ataaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    ||||||||||||||| |||| |||| ||||||||| || || ||||| |||||||||||||| ||| ||| |||||| |||||||||| |||||    
T  22594310 ataaaaaaggcttaaatgttcttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtacttta 22594403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 286 - 341
Target Start/End: Original strand, 14816570 - 14816625
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccat 341  Q
    |||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  14816570 ggcttaattgctattttagtcccttaactaattttttggtatcgctttggtcccat 14816625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 286 - 341
Target Start/End: Complemental strand, 14829170 - 14829115
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccat 341  Q
    |||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  14829170 ggcttaattgctattttagtcccttaactaattttttggtatcgctttggtcccat 14829115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 286 - 337
Target Start/End: Original strand, 45377427 - 45377478
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtc 337  Q
    ||||||||||||||||||||||||||| | ||||||||| ||||||||||||    
T  45377427 ggcttaattgttattttcgtcccttaattgattttttggtatcgctttggtc 45377478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 289 - 355
Target Start/End: Complemental strand, 9312231 - 9312165
Alignment:
Q  289 ttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagt 355  Q
    ||||||| |||||| |||| |||||||||||||||| ||||||||| |||||||| ||| |||||||    
T  9312231 ttaattgctattttagtcctttaactaattttttggtatcgctttgatcccataactaaaaaaaagt 9312165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 43633122 - 43633201
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||||||| |||||| |||||||||    
T  43633122 aggcttaaatgcttttttggtcccttaactatttaattggtatcgctttggtcccttaattaaaaaaaagattgtttgag 43633201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 595 - 637
Target Start/End: Complemental strand, 39567503 - 39567461
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaacccattatcat 637  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  39567503 tttacatttatcatatgaaatccaaatctaaaccctttatcat 39567461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 282 - 364
Target Start/End: Complemental strand, 41155076 - 41154994
Alignment:
Q  282 aaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  41155076 aaaaggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 41154994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 364
Target Start/End: Original strand, 22013459 - 22013540
Alignment:
Q  283 aaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  22013459 aaaggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 22013540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 2221592 - 2221672
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  2221592 aaggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 2221672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 280 - 372
Target Start/End: Original strand, 9115595 - 9115687
Alignment:
Q  280 aaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    |||| |||||||| || |||||| ||||||||| || ||  |||| |||||||||||||| ||| ||| |||||| |||||||| | ||||||    
T  9115595 aaaataggcttaaatgctattttggtcccttaagtatttagttggtatcgctttggtcccctaactaaaaaaaagattgtttgaatactttaa 9115687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 299 - 371
Target Start/End: Original strand, 13462119 - 13462191
Alignment:
Q  299 ttttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    |||| |||||||||||| || ||||| ||| |||||||||| ||| ||| |||||| |||||||||| |||||    
T  13462119 ttttggtcccttaactatttatttggtatcactttggtcccttaactaaaaaaaagattgtttgagtacttta 13462191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 320 - 372
Target Start/End: Complemental strand, 21015265 - 21015213
Alignment:
Q  320 tttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    ||||| |||||||||||||||||| ||||||||||| |||||| |||| ||||    
T  21015265 tttggtatcgctttggtcccataagtaataaaaagtctgtttgggtcccttaa 21015213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 280 - 364
Target Start/End: Complemental strand, 27786549 - 27786465
Alignment:
Q  280 aaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||| ||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  27786549 aaaaatggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 27786465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 280 - 364
Target Start/End: Original strand, 31445663 - 31445747
Alignment:
Q  280 aaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||| |||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  31445663 aaaataggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 31445747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 627
Target Start/End: Original strand, 39269687 - 39269719
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaac 627  Q
    |||||||||||||||||||||||||||||||||    
T  39269687 tttacctttatcatatgaaatccaaatctaaac 39269719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 45123218 - 45123298
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  45123218 aaggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 45123298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 627
Target Start/End: Complemental strand, 45378334 - 45378302
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaac 627  Q
    |||||||||||||||||||||||||||||||||    
T  45378334 tttacctttatcatatgaaatccaaatctaaac 45378302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 10134607 - 10134674
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaa 352  Q
    |||||||| || | |||| ||||||||| || || ||||| |||||||||||||||||| ||||||||    
T  10134607 aggcttaaatgctctttttgtcccttaagtatttatttggtatcgctttggtcccataagtaataaaa 10134674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 11713199 - 11713278
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  11713199 aggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 11713278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 286 - 361
Target Start/End: Complemental strand, 13463206 - 13463131
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgttt 361  Q
    |||||||||| | |||||||||||||| | ||| ||||| |||||||||||||| ||| ||| ||| || ||||||    
T  13463206 ggcttaattgctcttttcgtcccttaagttattatttggtatcgctttggtcccttaagtaaaaaatagattgttt 13463131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 371
Target Start/End: Complemental strand, 16906524 - 16906437
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    ||||||||| |||| | || ||||||| | || || ||||| |||||||||||||| ||||||| |||||  |||||||||| |||||    
T  16906524 aaggcttaaatgttctcttggtcccttgagtatttatttggtatcgctttggtcccttaattaaaaaaaatattgtttgagtacttta 16906437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 43086944 - 43086865
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||| |||| |||| |||||||||||| ||  |||| |||| ||||||||| ||| ||| |||||| |||||||||    
T  43086944 aggcttaaatgttcttttggtcccttaactatttaattggtatcgttttggtcccttaactaaaaaaaagattgtttgag 43086865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 2633849 - 2633803
Alignment:
Q  326 atcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    |||||||||||||| ||||||| |||||| |||||||||| ||||||    
T  2633849 atcgctttggtcccttaattaaaaaaaagattgtttgagtactttaa 2633803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 278 - 364
Target Start/End: Complemental strand, 11713636 - 11713550
Alignment:
Q  278 ataaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||| |||||| || | |||| |||||||||||| |   |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  11713636 ataaaaaaagcttaaatgctcttttggtcccttaactattcaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 11713550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 323
Target Start/End: Complemental strand, 14819429 - 14819391
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttg 323  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  14819429 aggcttaattgctattttagtcccttaactaattttttg 14819391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 595 - 637
Target Start/End: Original strand, 39270444 - 39270486
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaacccattatcat 637  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  39270444 tttacatttatcatatgaaatctaaatctaaaccctttatcat 39270486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 364
Target Start/End: Original strand, 41154617 - 41154695
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  41154617 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 41154695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 364
Target Start/End: Original strand, 42193779 - 42193857
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  42193779 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 42193857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 595 - 637
Target Start/End: Complemental strand, 45377555 - 45377513
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaacccattatcat 637  Q
    ||||| |||||||| |||||||||||||||||||| |||||||    
T  45377555 tttacatttatcatttgaaatccaaatctaaaccctttatcat 45377513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 372
Target Start/End: Complemental strand, 8000837 - 8000764
Alignment:
Q  299 ttttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    |||| ||||||||| || ||  |||||||||||||| |||| ||||||| |||||  |||||||||| ||||||    
T  8000837 ttttggtcccttaagtatttaattggcatcgctttgatcccttaattaaaaaaaatattgtttgagtactttaa 8000764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 372
Target Start/End: Original strand, 16905268 - 16905341
Alignment:
Q  299 ttttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    |||| ||||||||| || || ||||| |||||||||||||| | | ||| |||||| |||||||||| ||||||    
T  16905268 ttttggtcccttaagtatttatttggtatcgctttggtcccttgactaaaaaaaagattgtttgagtactttaa 16905341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 40229103 - 40229168
Alignment:
Q  299 ttttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  40229103 ttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 40229168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 280 - 365
Target Start/End: Original strand, 44553122 - 44553207
Alignment:
Q  280 aaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagt 365  Q
    ||||||||||||| ||   |||| ||||||||| || || ||||| |||| ||||||||| ||| ||| |||||| ||||||||||    
T  44553122 aaaaaaggcttaaatgcgtttttggtcccttaagtatttatttggtatcgttttggtcccttaactaaaaaaaagattgtttgagt 44553207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 283 - 364
Target Start/End: Complemental strand, 45466354 - 45466273
Alignment:
Q  283 aaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||||| || | |||| |||||||||||| ||  |||| |||||||||||| | ||| ||| |||||| |||||||||    
T  45466354 aaaggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcacttaactaaaaaaaagattgtttgag 45466273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 174; Significance: 3e-93; HSPs: 6)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 285 - 527
Target Start/End: Original strand, 123423 - 123665
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcat 384  Q
    ||||||||||| ||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||  | ||||||||||||||||||||| | |    
T  123423 aggcttaattgctattttcgtcccttaactaatttcttggtattgctttggtcccataattaataaaaagtccgcttgagtcctttaaatatgtctccgt 123522  T
Q  385 tacataaattggtccattccgttaattttattnnnnnnncgttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttcttcct 484  Q
    ||||||||||||||| ||||||||||||||||        |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  123523 tacataaattggtcccttccgttaattttattaaaaaaatgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcct 123622  T
Q  485 cctcaccttcatcttcttcaacaaatcttcataaaaccttcat 527  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  123623 cctcaccttcatcttcttcaacaaatcttcataaaaccttcat 123665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 285 - 527
Target Start/End: Original strand, 134299 - 134541
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcat 384  Q
    ||||||||||| ||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||  | ||||||||||||||||||||| | |    
T  134299 aggcttaattgctattttcgtcccttaactaatttcttggtattgctttggtcccataattaataaaaagtccgcttgagtcctttaaatatgtctccgt 134398  T
Q  385 tacataaattggtccattccgttaattttattnnnnnnncgttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttcttcct 484  Q
    ||||||||||||||| ||||||||||||||||        |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  134399 tacataaattggtcccttccgttaattttattaaaaaaatgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttcct 134498  T
Q  485 cctcaccttcatcttcttcaacaaatcttcataaaaccttcat 527  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  134499 cctcaccttcatcttcttcaacaaatcttcataaaaccttcat 134541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 285 - 416
Target Start/End: Complemental strand, 129478 - 129347
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcat 384  Q
    |||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||  ||||||||||||||||||||||| | |    
T  129478 aggcttaattgttattttcgtcccttaacttattttttggtatcactttggtcccataattaataaaaagtccgtttgagtcctttaaatatgtctccgt 129379  T
Q  385 tacataaattggtccattccgttaattttatt 416  Q
    ||||||||||||||| |||||| |||||||||    
T  129378 tacataaattggtcccttccgtcaattttatt 129347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 595 - 637
Target Start/End: Original strand, 129017 - 129059
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaacccattatcat 637  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  129017 tttacatttatcatatgaaatccaaatctaaaccctttatcat 129059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 627
Target Start/End: Original strand, 123694 - 123726
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaac 627  Q
    |||||||||||||||||||||||||||||||||    
T  123694 tttacctttatcatatgaaatccaaatctaaac 123726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 627
Target Start/End: Original strand, 134565 - 134597
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaac 627  Q
    |||||||||||||||||||||||||||||||||    
T  134565 tttacctttatcatatgaaatccaaatctaaac 134597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 170; Significance: 7e-91; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 277 - 527
Target Start/End: Original strand, 21282808 - 21283058
Alignment:
Q  277 tataaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatat 376  Q
    |||||| |||||||||||| |||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  21282808 tataaagaaggcttaattgctattttcgtcccttaattaatttttttgtatcgctttggtcccataattaataaaaagtctgtttgagtcttttaaatat 21282907  T
Q  377 gtcttcattacataaattggtccattccgttaattttattnnnnnnncgttaactcaagcacacatgtcattttcgcattggttggaatttatattcatc 476  Q
    ||||   |||||||||||||||| ||||||||||||||||       ||||||||||||||||  ||||||||||||||| |||||||||||| ||||||    
T  21282908 gtctctgttacataaattggtcccttccgttaattttattaaaaaaacgttaactcaagcacatgtgtcattttcgcattagttggaatttatcttcatc 21283007  T
Q  477 ttcttcctcctcaccttcatcttcttcaacaaatcttcataaaaccttcat 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21283008 ttcttcctcctcaccttcatcttcttcaacaaatcttcataaaaccttcat 21283058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 286 - 527
Target Start/End: Complemental strand, 5660249 - 5660008
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcatt 385  Q
    |||||||||| ||||||||||||| |||||||||||||| |||| ||||||| |||||||||||||| ||  |||||| ||||||||||||||||   ||    
T  5660249 ggcttaattgctattttcgtccctaaactaattttttggtatcgttttggtctcataattaataaaa-gtccgtttgaatcctttaaatatgtctctgtt 5660151  T
Q  386 acataaattggtccattccgttaattttattnnnnnnnc-gttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttcttcct 484  Q
    |||||||||||| | ||||||||||||||||         |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  5660150 acataaattggttccttccgttaattttattaaaaaatatgttaactcaagcacacgtgtcattttcacattggttggaatttatattcatcttcttcct 5660051  T
Q  485 cctcaccttcatcttcttcaacaaatcttcataaaaccttcat 527  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  5660050 cctcatcttcatcttcttcaacaaatcttcataaaaccttcat 5660008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 280 - 416
Target Start/End: Original strand, 5659098 - 5659235
Alignment:
Q  280 aaaaaaggcttaattgttatttt-cgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgt 378  Q
    ||||||| |||||||| |||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5659098 aaaaaagacttaattgctatttttcgtcccttaactaattttttggtatcactttggtcccataattaataaaaagtctgtttgagtcctttaaatatgt 5659197  T
Q  379 cttcattacataaattggtccattccgttaattttatt 416  Q
    ||   |||||||||||||  | ||||||||||||||||    
T  5659198 ctctgttacataaattggctccttccgttaattttatt 5659235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 285 - 416
Target Start/End: Original strand, 21611914 - 21612045
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcat 384  Q
    ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |  |||||||| ||||||||||||||   |    
T  21611914 aggcttaattgctattttcgtcccttaactaattttttggtatcgatttggtcccataattaataaaaaatccgtttgagttctttaaatatgtctctgt 21612013  T
Q  385 tacataaattggtccattccgttaattttatt 416  Q
    ||||||| ||||||| ||| ||||||||||||    
T  21612014 tacataatttggtcccttcagttaattttatt 21612045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 292 - 394
Target Start/End: Complemental strand, 21612933 - 21612831
Alignment:
Q  292 attgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcattacataa 391  Q
    ||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||| ||    
T  21612933 attgttattttcgtcccttaattaattttttggtatcgttttggtcccataattaataaaaagtctgtttgagtcctttaaatatgtctccgttacaaaa 21612834  T
Q  392 att 394  Q
    |||    
T  21612833 att 21612831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 595 - 675
Target Start/End: Complemental strand, 5659947 - 5659867
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaacccattatcattttaatttgtgaatttctttaagatttgaaatgactaa 675  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  5659947 tttacctttatcatatgaaatcctaatctaaactcattatcattttaatttgtgaatttctttaagatttggaatgactaa 5659867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 595 - 675
Target Start/End: Complemental strand, 21612502 - 21612422
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaacccattatcattttaatttgtgaatttctttaagatttgaaatgactaa 675  Q
    |||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||||| |||||||||    
T  21612502 tttacctttatcatatgaaatccaaatcaaaactcattatcactttaatttgtgaatttccttaagatttggaatgactaa 21612422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 595 - 659
Target Start/End: Complemental strand, 21612634 - 21612570
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaacccattatcattttaatttgtgaatttctttaa 659  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||    
T  21612634 tttacctttatcatatgaaatccaaatcaaaactcattatcattttaatttgtgaatttccttaa 21612570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 29751200 - 29751129
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagt 355  Q
    |||||||||||| |||||| ||||||||||||||| ||||| |||| ||||||||||||| ||| |||||||    
T  29751200 aaggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccataactaaaaaaaagt 29751129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 287 - 372
Target Start/End: Original strand, 20488261 - 20488346
Alignment:
Q  287 gcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    |||||||||||||||| ||| ||||| ||  ||||| | ||||||||||| | |||| ||||||||||||||||| ||||||||||    
T  20488261 gcttaattgttattttagtctcttaagtatatttttagtatcgctttggttctataagtaataaaaagtttgtttcagtcctttaa 20488346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 29744781 - 29744850
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagt 355  Q
    |||||||||| |||||| ||||||||||||||| ||||| |||| ||||||||||||| ||| |||||||    
T  29744781 ggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccataactaaaaaaaagt 29744850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 285 - 324
Target Start/End: Complemental strand, 21283962 - 21283923
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttgg 324  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21283962 aggcttaattgttattttcgtcccttaactaattttttgg 21283923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 286 - 372
Target Start/End: Complemental strand, 20489498 - 20489413
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    |||||||||| |||||| ||||||||  |  |||||| | || ||||||||||||||| ||||||||||| ||||||||||||||||    
T  20489498 ggcttaattgctattttagtcccttatgtt-ttttttagtattgctttggtcccataagtaataaaaagtatgtttgagtcctttaa 20489413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 424 - 461
Target Start/End: Complemental strand, 21612808 - 21612771
Alignment:
Q  424 cgttaactcaagcacacatgtcattttcgcattggttg 461  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21612808 cgttaactcaagcacacatgtcattttcgcattggttg 21612771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 12260445 - 12260521
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgttt 361  Q
    ||||||||||| | |||||||||||||| | ||| ||||| |||||||||||||| ||| ||| |||||| ||||||    
T  12260445 aggcttaattgctcttttcgtcccttaagttattatttggtatcgctttggtcccttaagtaaaaaaaagattgttt 12260521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 492 - 527
Target Start/End: Complemental strand, 21612726 - 21612691
Alignment:
Q  492 ttcatcttcttcaacaaatcttcataaaaccttcat 527  Q
    ||||||||||||||||||||||||||||||||||||    
T  21612726 ttcatcttcttcaacaaatcttcataaaaccttcat 21612691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 285 - 343
Target Start/End: Original strand, 14403687 - 14403745
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataa 343  Q
    ||||||||||| |||||| |||||||| ||||||| |||| ||| ||||||||||||||    
T  14403687 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 14403745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 282 - 364
Target Start/End: Original strand, 17383731 - 17383813
Alignment:
Q  282 aaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  17383731 aaaaggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 17383813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 364
Target Start/End: Original strand, 1948620 - 1948701
Alignment:
Q  283 aaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||||| ||||||||| ||| |||||||| ||  |||| || ||||||||||| ||| ||| |||||| |||||||||    
T  1948620 aaaggcttaaatgttattttggtctcttaactatttaattggtattgctttggtcccttaactaaaaaaaagattgtttgag 1948701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 29465751 - 29465816
Alignment:
Q  282 aaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaa 347  Q
    |||||||||||||| ||||||||||||||||||||||  || | ||| |||||| ||| |||||||    
T  29465751 aaaaggcttaattgctattttcgtcccttaactaattaattagtatcactttggccccttaattaa 29465816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 364
Target Start/End: Complemental strand, 31739976 - 31739895
Alignment:
Q  283 aaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  31739976 aaaggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 31739895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 299 - 371
Target Start/End: Complemental strand, 12261535 - 12261463
Alignment:
Q  299 ttttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    |||| |||||||||||| || ||||| ||| |||||||||| ||| ||| |||||| |||||||||| |||||    
T  12261535 ttttggtcccttaactatttatttggtatcactttggtcccttaactaaaaaaaagattgtttgagtacttta 12261463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 299 - 371
Target Start/End: Original strand, 27128857 - 27128929
Alignment:
Q  299 ttttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    |||| |||||||||||| || ||||| ||| |||||||||| ||| ||| |||||| |||||||||| |||||    
T  27128857 ttttggtcccttaactatttatttggtatcactttggtcccttaactaaaaaaaagattgtttgagtacttta 27128929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 286 - 361
Target Start/End: Complemental strand, 959375 - 959300
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgttt 361  Q
    ||||||| || | |||| ||||||||| || || ||||| |||||||||||||||||| |||||||| ||| ||||    
T  959375 ggcttaaatgctcttttggtcccttaagtatttatttgggatcgctttggtcccataagtaataaaaggttcgttt 959300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 372
Target Start/End: Complemental strand, 28866479 - 28866392
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    |||||||| || | |||| ||| ||||| || || ||||| |||||||||||||| ||| ||| |||||| |||||||||| ||||||    
T  28866479 aggcttaaatgctcttttggtctcttaaatatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttaa 28866392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 364
Target Start/End: Original strand, 3618781 - 3618859
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  3618781 ggcttaaatgcttttttagtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 3618859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 364
Target Start/End: Original strand, 21271486 - 21271564
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  21271486 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 21271564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 364
Target Start/End: Complemental strand, 21272177 - 21272099
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  21272177 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 21272099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 595 - 637
Target Start/End: Original strand, 21283582 - 21283624
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaacccattatcat 637  Q
    ||||| ||||||||||||||||||||||||||||  |||||||    
T  21283582 tttacatttatcatatgaaatccaaatctaaaccatttatcat 21283624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 364
Target Start/End: Complemental strand, 22498825 - 22498747
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  22498825 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 22498747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 286 - 347
Target Start/End: Complemental strand, 29467343 - 29467282
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaa 347  Q
    |||||||||| ||||||||||||||||||| || ||| | || ||||||||||  |||||||    
T  29467343 ggcttaattgctattttcgtcccttaactatttatttagtattgctttggtcctttaattaa 29467282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 150; Significance: 6e-79; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 287 - 516
Target Start/End: Original strand, 21815909 - 21816139
Alignment:
Q  287 gcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcc-tttaaatatgtcttcatt 385  Q
    ||||||||| |||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||  |||||||||| |||||||||||||   ||    
T  21815909 gcttaattgctattttcgtcccttaactaattttttagtatcgctttggttccataattaataaaaagtccgtttgagtccctttaaatatgtctctgtt 21816008  T
Q  386 acataaattggtccattccgttaattttattnnnnnnncgttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttcttcctc 485  Q
    |||||||||||||| ||||||||||||||||       ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  21816009 acataaattggtcccttccgttaattttattaaaaaaacgttaactcaagcacacgtgtcatttttgcattggttggaatttatattcatcttcttcctc 21816108  T
Q  486 ctcaccttcatcttcttcaacaaatcttcat 516  Q
    ||| |||||||||||||||||||||||||||    
T  21816109 ctcgccttcatcttcttcaacaaatcttcat 21816139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 287 - 416
Target Start/End: Complemental strand, 21817457 - 21817328
Alignment:
Q  287 gcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcatta 386  Q
    ||||||||  ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||   |||    
T  21817457 gcttaattactattttcatcccttaactaattttttggtatcgctttggtcccataattaataaaaagtctgtttgagtcctttaaatatgtctctgtta 21817358  T
Q  387 cataaattggtccattccgttaattttatt 416  Q
    ||||| || |||| ||||||||||||||||    
T  21817357 cataacttagtcccttccgttaattttatt 21817328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 285 - 343
Target Start/End: Original strand, 20184447 - 20184505
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataa 343  Q
    |||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||    
T  20184447 aggcttaattgttattttagtcccttaactaattttttggtatcggtttggtcccataa 20184505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 285 - 374
Target Start/End: Complemental strand, 14859192 - 14859103
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaat 374  Q
    ||||||||||| ||||||| |||||||| || |||||| | ||||||||||| |||||| ||||||||||| | |||||||| |||||||    
T  14859192 aggcttaattgctattttcttcccttaaatatttttttagtatcgctttggttccataagtaataaaaagtctatttgagtcatttaaat 14859103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 280 - 355
Target Start/End: Original strand, 27688480 - 27688555
Alignment:
Q  280 aaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagt 355  Q
    |||| ||||||||||| |||||| ||||||||||||||| ||||| |||| ||||||||||||| ||| |||||||    
T  27688480 aaaataggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccataactaaaaaaaagt 27688555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 285 - 354
Target Start/End: Complemental strand, 39992553 - 39992484
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaag 354  Q
    ||||||||||  |||||| ||||||||||||||||||||| ||| |||| ||||||||||||| ||||||    
T  39992553 aggcttaattactattttagtcccttaactaattttttggtatcacttttgtcccataattaaaaaaaag 39992484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 280 - 364
Target Start/End: Original strand, 13355169 - 13355253
Alignment:
Q  280 aaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||| |||||||| |||| |||| |||||||||||| ||  |||| |||||||||||||| ||||||| |||||| |||||||||    
T  13355169 aaaataggcttaaatgttcttttagtcccttaactatttaattggtatcgctttggtcccttaattaaaaaaaagattgtttgag 13355253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 285 - 343
Target Start/End: Complemental strand, 27695634 - 27695576
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataa 343  Q
    ||||||||||| |||||| ||||||||||||||| ||||| |||| |||||||||||||    
T  27695634 aggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccataa 27695576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 284 - 361
Target Start/End: Complemental strand, 20185873 - 20185796
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgttt 361  Q
    |||||||||||| |||||| |||| ||| |||||||||| | |||| |||| |||||||| ||| |||||||||||||    
T  20185873 aaggcttaattgctattttagtccattacctaatttttttgtatcggtttgatcccataactaaaaaaaagtttgttt 20185796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 285 - 414
Target Start/End: Original strand, 32304231 - 32304360
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcat 384  Q
    ||||||||||| | |||||||||||||| | ||| ||||| |||||||||||||| ||| ||| |||||| ||||||  || |||||  | | ||| | |    
T  32304231 aggcttaattgctcttttcgtcccttaagttattatttggtatcgctttggtcccttaagtaaaaaaaagattgttttggtactttatctttatctccgt 32304330  T
Q  385 tacataaattggtccattccgttaatttta 414  Q
    |||||   ||||||| ||||||||||||||    
T  32304331 tacatgttttggtcctttccgttaatttta 32304360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 36982691 - 36982735
Alignment:
Q  327 tcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||    
T  36982691 tcgctttggtcccataagtaataaaaagtctgtttgagtccttta 36982735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 37008130 - 37008174
Alignment:
Q  327 tcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||    
T  37008130 tcgctttggtcccataagtaataaaaagtctgtttgagtccttta 37008174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 289 - 353
Target Start/End: Original strand, 49221510 - 49221574
Alignment:
Q  289 ttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaa 353  Q
    |||||||||||||| ||||||||||||||||||||| ||||  || ||||||||| ||| |||||    
T  49221510 ttaattgttatttttgtcccttaactaattttttggtatcgggttagtcccataactaaaaaaaa 49221574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 286 - 365
Target Start/End: Complemental strand, 40503790 - 40503711
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagt 365  Q
    |||||||||| | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| ||||||||||    
T  40503790 ggcttaattgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgagt 40503711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 45940739 - 45940660
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||| || |||||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  45940739 aggcttaaatgctattttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 45940660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 285 - 371
Target Start/End: Complemental strand, 32305329 - 32305243
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    |||||||| |||  |||| |||||||||||| || ||||| ||| |||||||||| ||| ||| |||||| |||||||||| |||||    
T  32305329 aggcttaaatgtgtttttggtcccttaactatttatttggtatcactttggtcccttaactaaaaaaaagattgtttgagtacttta 32305243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 372
Target Start/End: Complemental strand, 4953494 - 4953405
Alignment:
Q  283 aaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    |||||||||| ||||  ||| ||| ||||| || || ||||| |||| ||||||||||||| ||||||||||| ||||| ||||| ||||    
T  4953494 aaaggcttaactgtttatttggtcacttaaatatttatttggtatcgttttggtcccataagtaataaaaagtctgtttaagtcccttaa 4953405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 17509464 - 17509517
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtccc 339  Q
    |||||||||||| |||||||||||||| | ||| ||||| ||||||||||||||    
T  17509464 ggcttaattgttcttttcgtcccttaagttattatttggtatcgctttggtccc 17509517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 288 - 353
Target Start/End: Original strand, 39991507 - 39991572
Alignment:
Q  288 cttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaa 353  Q
    ||||||||||||||| || |||||||||||||||||  |||| |||| |||||||| ||| |||||    
T  39991507 cttaattgttattttagttccttaactaattttttgatatcgttttgatcccataactaaaaaaaa 39991572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 54831873 - 54831934
Alignment:
Q  304 gtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagt 365  Q
    |||||||||||| || ||||| |||||||||||||| ||| ||| |||||| ||||||||||    
T  54831873 gtcccttaactatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagt 54831934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 12739963 - 12740042
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  12739963 aggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 12740042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 24243056 - 24242977
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  24243056 aggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 24242977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 28919124 - 28919175
Alignment:
Q  321 ttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    |||| |||||||||||||| ||||||| |||||| |||||||||| ||||||    
T  28919124 ttggtatcgctttggtcccttaattaaaaaaaagattgtttgagtactttaa 28919175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 527
Target Start/End: Original strand, 36982856 - 36982891
Alignment:
Q  492 ttcatcttcttcaacaaatcttcataaaaccttcat 527  Q
    ||||||||||||| ||||||||||||||||||||||    
T  36982856 ttcatcttcttcatcaaatcttcataaaaccttcat 36982891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 527
Target Start/End: Original strand, 37008295 - 37008330
Alignment:
Q  492 ttcatcttcttcaacaaatcttcataaaaccttcat 527  Q
    ||||||||||||| ||||||||||||||||||||||    
T  37008295 ttcatcttcttcatcaaatcttcataaaaccttcat 37008330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 297 - 364
Target Start/End: Original strand, 39198428 - 39198495
Alignment:
Q  297 tattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||| ||||||||| || ||  |||| |||||||||||||| ||||||| |||||| |||||||||    
T  39198428 tattttggtcccttaattatttaattggtatcgctttggtcccttaattaaaaaaaagattgtttgag 39198495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 280 - 371
Target Start/End: Complemental strand, 42541264 - 42541173
Alignment:
Q  280 aaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    |||| |||||||| |||  ||||  ||||||||||| || ||||| ||| |||||||||| ||| ||| |||||| |||||||||| |||||    
T  42541264 aaaataggcttaaatgtgtttttgatcccttaactatttatttggtatcactttggtcccttaactaaaaaaaagattgtttgagtacttta 42541173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 297 - 372
Target Start/End: Original strand, 50530628 - 50530703
Alignment:
Q  297 tattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    |||||| ||||||||| || ||  |||| |||||||||||||| ||| ||| |||||| |||||||||| ||||||    
T  50530628 tattttagtcccttaagtatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttaa 50530703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 24244835 - 24244765
Alignment:
Q  282 aaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaa 352  Q
    ||||||||||| || |||||| ||||||||| || || ||||| ||||||||| | |||||| ||||||||    
T  24244835 aaaaggcttaaatgctattttggtcccttaagtatttatttggtatcgctttgataccataagtaataaaa 24244765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 352
Target Start/End: Original strand, 43464812 - 43464878
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaa 352  Q
    ||||||| || | |||| ||||||||| || || ||||| |||||||||||||||||| ||||||||    
T  43464812 ggcttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccataagtaataaaa 43464878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 145; Significance: 6e-76; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 285 - 513
Target Start/End: Original strand, 21709157 - 21709386
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcat 384  Q
    ||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||  |||| |||||||||||||||||||| |    
T  21709157 aggcttaattgctattttcgtcccttaactaattttttagtatcgctttggtcccataattaataaaaagtccgtttaagtcctttaaatatgtcttcgt 21709256  T
Q  385 tacataaattggtccattccgttaattttatt-nnnnnnncgttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttcttcc 483  Q
    ||||||||||||||| ||||||||||||||||        ||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||    
T  21709257 tacataaattggtcccttccgttaattttattaaaaaaaacgttaactcaagcacacgtgtcatttttgcattggttagaatttatattcatcttcttcc 21709356  T
Q  484 tcctcaccttcatcttcttcaacaaatctt 513  Q
      |||||||||||||| |||||||||||||    
T  21709357 aactcaccttcatctttttcaacaaatctt 21709386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 286 - 482
Target Start/End: Complemental strand, 26025924 - 26025728
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcatt 385  Q
    |||||||||| |||||| |||| ||||||||||| |||| || |||||| | ||||||||||||||||||  | ||||||||||||||||||||| | ||    
T  26025924 ggcttaattgctatttttgtcctttaactaatttcttggtattgctttgattccataattaataaaaagtccgcttgagtcctttaaatatgtctccgtt 26025825  T
Q  386 acataaattggtccattccgttaattttattnnnnnnncgttaactcaagcacacatgtcattttcgcattggttggaatttatattcatcttcttc 482  Q
    |||||||||||||  ||||||||||||||||        |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26025824 acataaattggtctcttccgttaattttattaaaaaaatgttaactcaagcacacgtgtcattttcgcattggttggaatttatattcatcttcttc 26025728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 287 - 416
Target Start/End: Original strand, 26024888 - 26025017
Alignment:
Q  287 gcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcatta 386  Q
    ||||||||| ||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||    
T  26024888 gcttaattgctatcttcgtcccttaacttattttttggtatcgctttggtcccataattaataaaaagtctgtttgagtcctttaaatatgtctccgtta 26024987  T
Q  387 cataaattggtccattccgttaattttatt 416  Q
    ||||||||||||| |||||| |||||||||    
T  26024988 cataaattggtcccttccgtcaattttatt 26025017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 285 - 416
Target Start/End: Complemental strand, 21710660 - 21710529
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaatatgtcttcat 384  Q
    ||||| ||||| |||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||| | |    
T  21710660 aggctgaattgatatttttgtcccttaacttattttttggtatcgctttggtcccataattaataaaaagtccgtttgagtcctttaaatatgtctccgt 21710561  T
Q  385 tacataaattggtccattccgttaattttatt 416  Q
    ||||||||||||||| || | | |||||||||    
T  21710560 tacataaattggtccctttcttcaattttatt 21710529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 288 - 374
Target Start/End: Complemental strand, 10990654 - 10990568
Alignment:
Q  288 cttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaat 374  Q
    |||||||  |||||||||| ||||  || |||||| | ||||||||| |||||||| ||||||||||| ||||||||||||||||||    
T  10990654 cttaattactattttcgtctcttatgtatttttttagtatcgctttgatcccataagtaataaaaagtctgtttgagtcctttaaat 10990568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 286 - 366
Target Start/End: Original strand, 10986695 - 10986775
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtc 366  Q
    |||||||||  | ||||||||||||||||| |||||||| |||| |||| ||| |||||| ||||||||||||||| ||||    
T  10986695 ggcttaatttctcttttcgtcccttaactatttttttggtatcgttttgctcctataattgataaaaagtttgtttaagtc 10986775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 288 - 352
Target Start/End: Original strand, 45087067 - 45087131
Alignment:
Q  288 cttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaa 352  Q
    ||||||||||||||| |||| |||||||||||||||| |||| ||||||||||||| ||| ||||    
T  45087067 cttaattgttattttagtcctttaactaattttttggtatcggtttggtcccataactaaaaaaa 45087131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 283 - 364
Target Start/End: Complemental strand, 45457165 - 45457084
Alignment:
Q  283 aaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||||||| |||||| |||||||||    
T  45457165 aaaggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaattaaaaaaaagattgtttgag 45457084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 283 - 364
Target Start/End: Original strand, 48094837 - 48094918
Alignment:
Q  283 aaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||||| |||| |||| |||||||||||| ||  |||| |||| ||||||||| ||| ||| ||||||||||||||||    
T  48094837 aaaggcttaaatgttcttttggtcccttaactatttaattggtatcgttttggtcccttaactaaaaaaaagtttgtttgag 48094918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 280 - 364
Target Start/End: Complemental strand, 31852146 - 31852062
Alignment:
Q  280 aaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  31852146 aaaaaaggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 31852062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 492 - 527
Target Start/End: Complemental strand, 26025739 - 26025704
Alignment:
Q  492 ttcatcttcttcaacaaatcttcataaaaccttcat 527  Q
    ||||||||||||||||||||||||||||||||||||    
T  26025739 ttcatcttcttcaacaaatcttcataaaaccttcat 26025704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 40740113 - 40740046
Alignment:
Q  280 aaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaa 347  Q
    |||||||| |||||||||||||| ||||||||| || || ||| | |||||||||||||| |||||||    
T  40740113 aaaaaaggtttaattgttattttagtcccttaattatttatttagtatcgctttggtcccttaattaa 40740046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 595 - 637
Target Start/End: Original strand, 21710217 - 21710259
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaacccattatcat 637  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  21710217 tttacatttatcatatgaaatccaaatctaaaccctttatcat 21710259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 595 - 637
Target Start/End: Complemental strand, 26025329 - 26025287
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaacccattatcat 637  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  26025329 tttacatttatcatatgaaatccaaatctaaaccctttatcat 26025287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 283 - 361
Target Start/End: Complemental strand, 30766745 - 30766667
Alignment:
Q  283 aaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgttt 361  Q
    ||||||||||||| | |||||||||||||| | ||| ||||| ||| |||||||||| ||| ||| |||||| ||||||    
T  30766745 aaaggcttaattgcttttttcgtcccttaagttattatttggtatcactttggtcccttaagtaaaaaaaagattgttt 30766667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 286 - 352
Target Start/End: Complemental strand, 45088310 - 45088244
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaa 352  Q
    |||||||||| |||||| ||||||||||||||| ||||| |||  ||||||||||||| ||| ||||    
T  45088310 ggcttaattgctattttagtcccttaactaattgtttggtatcagtttggtcccataactaaaaaaa 45088244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 286 - 347
Target Start/End: Original strand, 40738193 - 40738254
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaa 347  Q
    |||||||||| ||||||||||||| ||||||||  || | |||||||||||||| |||||||    
T  40738193 ggcttaattgctattttcgtccctcaactaattaattagtatcgctttggtcccttaattaa 40738254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 364
Target Start/End: Complemental strand, 40852221 - 40852140
Alignment:
Q  283 aaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  40852221 aaaggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 40852140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 364
Target Start/End: Original strand, 45995264 - 45995345
Alignment:
Q  283 aaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||| ||||| |||| |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  45995264 aaagacttaaatgttcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 45995345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 280 - 364
Target Start/End: Original strand, 8090815 - 8090899
Alignment:
Q  280 aaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||| | |||| |||| |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  8090815 aaaaaatgtttaaatgtttttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 8090899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 299 - 371
Target Start/End: Original strand, 17278412 - 17278484
Alignment:
Q  299 ttttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    |||| |||||||||||| || ||||| ||| |||||||||| ||| ||| |||||| |||||||||| |||||    
T  17278412 ttttggtcccttaactatttatttggtatcactttggtcccttaactaaaaaaaagattgtttgagtacttta 17278484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 627
Target Start/End: Original strand, 21709415 - 21709447
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaac 627  Q
    |||||||||||||||||||||||||||||||||    
T  21709415 tttacctttatcatatgaaatccaaatctaaac 21709447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 627
Target Start/End: Complemental strand, 26025680 - 26025648
Alignment:
Q  595 tttacctttatcatatgaaatccaaatctaaac 627  Q
    |||||||||||||||||||||||||||||||||    
T  26025680 tttacctttatcatatgaaatccaaatctaaac 26025648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 365
Target Start/End: Complemental strand, 28461044 - 28460964
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagt 365  Q
    |||||||| |||| |||| ||||||||| || ||  |||| |||||||||||||| ||| ||| |||||| ||||||||||    
T  28461044 aggcttaaatgttcttttggtcccttaagtatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgagt 28460964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 299 - 371
Target Start/End: Original strand, 30765681 - 30765753
Alignment:
Q  299 ttttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    |||| |||||||||||| || ||||| ||| |||||||||| ||| ||| |||||| |||||||||| |||||    
T  30765681 ttttggtcccttaactatttatttggtatcactttggtcccttaactaaaaaaaagattgtttgagtacttta 30765753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 280 - 364
Target Start/End: Complemental strand, 39143575 - 39143491
Alignment:
Q  280 aaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||| |||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  39143575 aaaataggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 39143491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 45456732 - 45456812
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  45456732 aaggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 45456812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 7776456 - 7776535
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||| |||| |||| |||||||||||| ||  |||  |||||||||||||| ||| ||| |||||| |||||||||    
T  7776456 aggcttaaatgttcttttggtcccttaactatttaattgatatcgctttggtcccttaactaaaaaaaagattgtttgag 7776535  T

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Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 7777016 - 7776937
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  7777016 aggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 7776937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 288 - 347
Target Start/End: Original strand, 19543492 - 19543551
Alignment:
Q  288 cttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaa 347  Q
    |||||||| ||||||||||||||||||| || ||| | ||||||||| |||| |||||||    
T  19543492 cttaattgctattttcgtcccttaactatttatttagtatcgctttgatcccttaattaa 19543551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 286 - 361
Target Start/End: Complemental strand, 26041873 - 26041798
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgttt 361  Q
    ||||||| || | |||| ||||||||| || || ||||| ||||||||||||| |||| |||||||| ||||||||    
T  26041873 ggcttaaatgctcttttggtcccttaaatatttatttggtatcgctttggtcctataagtaataaaaggtttgttt 26041798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 27284241 - 27284320
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  27284241 aggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 27284320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 364
Target Start/End: Complemental strand, 27284667 - 27284589
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  27284667 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 27284589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 18458820 - 18458755
Alignment:
Q  299 ttttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  18458820 ttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 18458755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 372
Target Start/End: Original strand, 36720492 - 36720565
Alignment:
Q  299 ttttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    |||| ||||||||| || ||  |||| |||||||||||||| ||| ||| |||||| |||||||||| ||||||    
T  36720492 ttttagtcccttaagtatttagttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttaa 36720565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 42287324 - 42287389
Alignment:
Q  299 ttttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||| |||||||||||| ||  |||| |||||||||||||| ||||||| |||||  |||||||||    
T  42287324 ttttggtcccttaactatttaattggtatcgctttggtcccttaattaagaaaaatattgtttgag 42287389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 8e-26; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 284 - 372
Target Start/End: Original strand, 36888336 - 36888424
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    |||||||||||| |||||| |||||||| |||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||    
T  36888336 aaggcttaattgctattttagtcccttagctaattttttggtatcggtttggtcccataactaataaaaagtctgtttgagtcctttaa 36888424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 284 - 372
Target Start/End: Complemental strand, 36889807 - 36889719
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    |||||||||||| |||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||| | ||||| ||||||||    
T  36889807 aaggcttaattgctattttagtcccttaactaattttttggtatcggtttggtcccataattaataaaaagtctatttgaatcctttaa 36889719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 281 - 372
Target Start/End: Original strand, 15044734 - 15044825
Alignment:
Q  281 aaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    |||||||||||| || |||||| |||||||||||| ||  |||| |||||||||||||  ||| ||| |||||| |||||||||| ||||||    
T  15044734 aaaaaggcttaagtgctattttggtcccttaactatttaattggtatcgctttggtcctttaactaaaaaaaagattgtttgagtactttaa 15044825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 280 - 374
Target Start/End: Original strand, 5381530 - 5381624
Alignment:
Q  280 aaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaaat 374  Q
    ||||||||||||| || | |||| ||||||||| || ||  |||| |||||||||||||| ||| ||| |||||| |||||||||| ||||||||    
T  5381530 aaaaaaggcttaaatgctcttttggtcccttaagtatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttaaat 5381624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 3603504 - 3603557
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtccc 339  Q
    |||||||||||||||||||||||||||||| || ||| | ||||||||||||||    
T  3603504 ggcttaattgttattttcgtcccttaactatttatttagtatcgctttggtccc 3603557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 285 - 354
Target Start/End: Original strand, 7184880 - 7184949
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaag 354  Q
    ||||||||||| |||||| ||| ||||||||||||||||| |||| |||| |||||||| ||| ||||||    
T  7184880 aggcttaattgctattttagtctcttaactaattttttggtatcggtttgatcccataactaaaaaaaag 7184949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 285 - 342
Target Start/End: Original strand, 35738362 - 35738419
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccata 342  Q
    ||||||||||  ||||||||| |||||||||||||||||| ||||||||||| |||||    
T  35738362 aggcttaattactattttcgttccttaactaattttttggtatcgctttggttccata 35738419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 356
Target Start/End: Original strand, 34166842 - 34166914
Alignment:
Q  285 aggcttaattgttattttcgtcccttaacta-attttttggcatcgctttggtcccataattaataaaaagtt 356  Q
    ||||||||||| |||||||||||||||| ||  |||||||| |||  ||| ||||||||||||||||||||||    
T  34166842 aggcttaattgctattttcgtcccttaaatattttttttggtatcagttttgtcccataattaataaaaagtt 34166914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 2822303 - 2822382
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||| |||| |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  2822303 aggcttaaatgtttttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 2822382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 26424883 - 26424804
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||||||| |||||| |||||||||    
T  26424883 aggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaattaaaaaaaagattgtttgag 26424804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 13809426 - 13809491
Alignment:
Q  287 gcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaa 352  Q
    ||||||||  |||||| | ||||||||||||||||||| ||||||||| ||| |||||||| ||||    
T  13809426 gcttaatttctattttaggcccttaactaattttttggtatcgctttgatcctataattaaaaaaa 13809491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 284 - 361
Target Start/End: Original strand, 19297525 - 19297602
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgttt 361  Q
    |||||||||||| | |||||||||||||| | ||| ||||| |||| ||||||||| ||| ||| |||||| ||||||    
T  19297525 aaggcttaattgctcttttcgtcccttaagttattatttggtatcgttttggtcccttaagtaaaaaaaagattgttt 19297602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 364
Target Start/End: Complemental strand, 677980 - 677900
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||||| |||| |||| |||||||||||| ||  |||| ||||||||| |||| ||| ||| |||||| |||||||||    
T  677980 aaggcttaaatgttcttttagtcccttaactatttaattggtatcgctttgatcccttaactaaaaaaaagattgtttgag 677900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 33200026 - 33200106
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||||| || |||||| |||| ||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  33200026 aaggcttaaatgctattttggtcctttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 33200106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 304 - 372
Target Start/End: Complemental strand, 38978964 - 38978896
Alignment:
Q  304 gtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    ||||||||| || || ||||| |||||||||||||||||  |||||||||||| ||||| |||| ||||    
T  38978964 gtcccttaaatatttatttggtatcgctttggtcccatatgtaataaaaagttcgtttgggtcccttaa 38978896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 304 - 372
Target Start/End: Complemental strand, 39109543 - 39109475
Alignment:
Q  304 gtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||| ||||||    
T  39109543 gtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttaa 39109475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 361
Target Start/End: Original strand, 40468049 - 40468121
Alignment:
Q  289 ttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgttt 361  Q
    ||||||| | |||||||||||||| | ||| ||||| |||||||||||||| ||| ||| |||||| ||||||    
T  40468049 ttaattgctcttttcgtcccttaagttattatttggtatcgctttggtcccttaagtaaaaaaaagattgttt 40468121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 299 - 371
Target Start/End: Complemental strand, 40469142 - 40469070
Alignment:
Q  299 ttttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    |||| |||||||||||| || ||||| ||| |||||||||| ||||||| |||||  |||||||||| |||||    
T  40469142 ttttggtcccttaactatttatttggtatcactttggtcccttaattaaaaaaaatattgtttgagtacttta 40469070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 364
Target Start/End: Complemental strand, 43820388 - 43820308
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||||| || |||||| || ||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  43820388 aaggcttaaatgctattttggttccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 43820308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 4602876 - 4602797
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  4602876 aggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 4602797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 364
Target Start/End: Complemental strand, 13479495 - 13479412
Alignment:
Q  281 aaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||||||| || | |||| |||| ||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  13479495 aaaaaggcttaaatgctcttttggtcctttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 13479412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 355
Target Start/End: Complemental strand, 13810637 - 13810569
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagt 355  Q
    |||||||||||  ||||| ||| |||||||||||||  || |||||||||||||||||| ||| |||||||    
T  13810637 aggcttaattgcaattttagtctcttaactaatttt--ggtatcgctttggtcccataactaaaaaaaagt 13810569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 361
Target Start/End: Complemental strand, 16581660 - 16581577
Alignment:
Q  278 ataaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgttt 361  Q
    ||||||||||||||| ||   |||| ||||||||| || || ||| | |||||||||||||||||| |||||||| || |||||    
T  16581660 ataaaaaaggcttaaatgcacttttggtcccttaagtatttatttagtatcgctttggtcccataagtaataaaaggtctgttt 16581577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 364
Target Start/End: Complemental strand, 11714055 - 11713977
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||| |||| |||| |||||||||||| ||  |||  |||||||||||||| ||| ||| |||||| |||||||||    
T  11714055 ggcttaaatgttcttttggtcccttaactatttaattgatatcgctttggtcccttaactaaaaaaaagattgtttgag 11713977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 299 - 365
Target Start/End: Complemental strand, 12602642 - 12602576
Alignment:
Q  299 ttttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagt 365  Q
    |||| ||||||||| || || ||||| |||||||||||||| ||| ||| |||||| ||||||||||    
T  12602642 ttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagt 12602576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 277 - 371
Target Start/End: Original strand, 28189438 - 28189532
Alignment:
Q  277 tataaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    ||||| |||||||||| ||   |||| |||||||||||| || ||||| ||| |||||||||| ||| ||| |||||  |||||||||| |||||    
T  28189438 tataataaaggcttaaatgcgtttttggtcccttaactatttatttggtatcactttggtcccttaactaaaaaaaatattgtttgagtacttta 28189532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 364
Target Start/End: Complemental strand, 34618580 - 34618502
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  34618580 ggcttaaatgctcttttagtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 34618502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 2822726 - 2822661
Alignment:
Q  299 ttttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  2822726 ttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 2822661  T

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Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 15136921 - 15136856
Alignment:
Q  299 ttttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  15136921 ttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 15136856  T

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Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 283 - 372
Target Start/End: Complemental strand, 36313747 - 36313658
Alignment:
Q  283 aaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    |||||||||||| || |||| |||||||||||| ||  |||| ||  ||||||| || ||| ||| |||||| |||||||||| ||||||    
T  36313747 aaaggcttaattcttcttttggtcccttaactatttaattggtataactttggttccttaactaaaaaaaagattgtttgagtactttaa 36313658  T

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Target: scaffold0054 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 282 - 372
Target Start/End: Complemental strand, 57620 - 57530
Alignment:
Q  282 aaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    |||||||||||||||| |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||| ||||||    
T  57620 aaaaggcttaattgttcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttaa 57530  T

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Target: scaffold0054; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 285 - 372
Target Start/End: Original strand, 57021 - 57107
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    ||||||||||||| |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||| ||||||    
T  57021 aggcttaattgttcttttggtcccttaactatttaattggtatcgctttggtcccttaactaa-aaaaagattgtttgagtactttaa 57107  T

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Target: scaffold0029 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 286 - 352
Target Start/End: Complemental strand, 71887 - 71821
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaa 352  Q
    |||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||| ||| ||||    
T  71887 ggcttaattgctattttagtcccttaactaattttttggtatcgctttggtcccataactaaaaaaa 71821  T

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Target: scaffold0029; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 70667 - 70736
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaa 353  Q
    |||||||||||| |||||| ||||||||||||||||||||| |||| ||||||||||||| ||| |||||    
T  70667 aaggcttaattgctattttagtcccttaactaattttttggtatcggtttggtcccataactaaaaaaaa 70736  T

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Target: scaffold0220 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 286 - 372
Target Start/End: Original strand, 25963 - 26049
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    ||||||| || | |||| ||||||||| || || ||||| |||||||||||||||||| ||||||||||||||||| ||||| ||||    
T  25963 ggcttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccataagtaataaaaagtttgtttaagtcccttaa 26049  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 282 - 371
Target Start/End: Complemental strand, 25333250 - 25333161
Alignment:
Q  282 aaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    ||||||||||| || |||||| |||||||||||| ||  |||| |||||||||||||  ||||||| |||||| |||||||||| |||||    
T  25333250 aaaaggcttaaatgctattttggtcccttaactatttaattggtatcgctttggtcctttaattaaaaaaaagattgtttgagtacttta 25333161  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 305 - 371
Target Start/End: Original strand, 38384887 - 38384953
Alignment:
Q  305 tcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    ||||||||||| || ||||| |||||||||||||| ||||||| |||||| |||||||||| |||||    
T  38384887 tcccttaactatttatttggtatcgctttggtcccttaattaaaaaaaagattgtttgagtacttta 38384953  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 353
Target Start/End: Complemental strand, 19718949 - 19718881
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaa 353  Q
    ||||||||||| |||||| |||| |||||||||||||||| ||||||||| ||| |||| ||| |||||    
T  19718949 aggcttaattgctattttagtcctttaactaattttttggtatcgctttgatcctataactaaaaaaaa 19718881  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 280 - 364
Target Start/End: Complemental strand, 24100764 - 24100680
Alignment:
Q  280 aaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  24100764 aaaaaaggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 24100680  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 284 - 372
Target Start/End: Complemental strand, 30112770 - 30112682
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    |||||||||||| | |||| ||||||||| || ||  |||| |||||||||||||| ||| ||| |||||| |||||||||| ||||||    
T  30112770 aaggcttaattgctcttttagtcccttaagtatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgagttctttaa 30112682  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 281 - 364
Target Start/End: Complemental strand, 7265677 - 7265594
Alignment:
Q  281 aaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||||||| |||| |||| |||||||||||| ||  |||| ||||||||||| || ||| ||| |||||| |||||||||    
T  7265677 aaaaaggcttaaatgttcttttggtcccttaactatttaattggtatcgctttggttccttaactaaaaaaaagattgtttgag 7265594  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 285 - 371
Target Start/End: Complemental strand, 28905516 - 28905430
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    |||||||| |||| |||| ||||||||| || || ||||| |||||||||||||| ||| ||| |||||  |||||||||| |||||    
T  28905516 aggcttaaatgttcttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaaaattgtttgagtacttta 28905430  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 285 - 371
Target Start/End: Complemental strand, 28941911 - 28941825
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    |||||||| |||| |||| ||||||||| || || ||||| |||||||||||||| ||| ||| |||||  |||||||||| |||||    
T  28941911 aggcttaaatgttcttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaaaattgtttgagtacttta 28941825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 285 - 371
Target Start/End: Original strand, 37191592 - 37191678
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    |||||||| |||  |||| |||||||||||  || ||||| |||||||||||||| ||| ||| |||||| |||||||||| |||||    
T  37191592 aggcttaaatgtgcttttggtcccttaactgtttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtacttta 37191678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 285 - 371
Target Start/End: Complemental strand, 37192531 - 37192445
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    |||||||| |||  |||| |||||||||||| || ||||| |||||||||||||| ||| ||| |||||| || ||||||| |||||    
T  37192531 aggcttaaatgtgtttttggtcccttaactatttatttggtatcgctttggtcccttaactaaaaaaaagattatttgagtacttta 37192445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 285 - 347
Target Start/End: Original strand, 37966813 - 37966875
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaa 347  Q
    ||||||||||||||||||||||||||||||| ||  || | ||  ||||||||||||||||||    
T  37966813 aggcttaattgttattttcgtcccttaactatttaattagtattactttggtcccataattaa 37966875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 364
Target Start/End: Original strand, 17339792 - 17339873
Alignment:
Q  283 aaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  17339792 aaaggcttaaatgcttttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 17339873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 286 - 371
Target Start/End: Complemental strand, 30645785 - 30645700
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    ||||||| || | |||| ||||||||| || || ||||| |||||||||||||| ||| ||| |||||| |||||||||| |||||    
T  30645785 ggcttaaatgctcttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtacttta 30645700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 361
Target Start/End: Complemental strand, 35463912 - 35463855
Alignment:
Q  304 gtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgttt 361  Q
    ||||||||| || || ||||| |||||||||||||||||| ||||||||||| |||||    
T  35463912 gtcccttaaatatttatttggtatcgctttggtcccataagtaataaaaagtctgttt 35463855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 281 - 361
Target Start/End: Complemental strand, 23083643 - 23083563
Alignment:
Q  281 aaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgttt 361  Q
    ||||||| ||||||| | |||||||||||||| | ||| ||||| |||| ||||||||| ||| ||| |||||| ||||||    
T  23083643 aaaaaggtttaattgctcttttcgtcccttaagttattatttggtatcgttttggtcccttaagtaaaaaaaagattgttt 23083563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 42766836 - 42766896
Alignment:
Q  305 tcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagt 365  Q
    ||||||||||| || ||||| |||||||||||||| ||| ||| |||||| ||||||||||    
T  42766836 tcccttaactatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagt 42766896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 435553 - 435632
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  435553 aggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 435632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 282 - 361
Target Start/End: Original strand, 6793763 - 6793842
Alignment:
Q  282 aaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgttt 361  Q
    |||||||||||||| | |||| ||||||||| | ||| ||||| ||| |||||||||| ||| ||| |||||| ||||||    
T  6793763 aaaaggcttaattgctctttttgtcccttaagttattatttggtatcactttggtcccttaagtaaaaaaaagattgttt 6793842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 361
Target Start/End: Original strand, 14662355 - 14662438
Alignment:
Q  278 ataaaaaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgttt 361  Q
    |||||||||| | || || | |||| ||||||||| || || |||||||||||||||||||| ||| |||||||| ||| ||||    
T  14662355 ataaaaaagggtcaaatgctcttttggtcccttaagtatttatttggcatcgctttggtcccttaagtaataaaaggttcgttt 14662438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 16670087 - 16670008
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  16670087 aggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 16670008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 364
Target Start/End: Original strand, 7265248 - 7265326
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||| ||||||||| |||||||||||| ||  |||| ||| ||||||| || ||| ||| |||||| |||||||||    
T  7265248 ggcttaaatgttattttggtcccttaactatttaattggtatcactttggttccttaactaaaaaaaagattgtttgag 7265326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 299 - 365
Target Start/End: Complemental strand, 24042724 - 24042658
Alignment:
Q  299 ttttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagt 365  Q
    |||| ||||||||| || || ||||| |||||||||||||| ||| ||| |||||| ||||||||||    
T  24042724 ttttggtcccttaagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagt 24042658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 364
Target Start/End: Complemental strand, 27851101 - 27851023
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  27851101 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 27851023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 364
Target Start/End: Complemental strand, 29962239 - 29962161
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  29962239 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 29962161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 364
Target Start/End: Original strand, 30012559 - 30012637
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  30012559 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 30012637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 364
Target Start/End: Original strand, 38312325 - 38312403
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  38312325 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 38312403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 283 - 372
Target Start/End: Original strand, 9050050 - 9050139
Alignment:
Q  283 aaaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtcctttaa 372  Q
    |||||||||| || | ||||  ||| ||||||| ||  ||||||||||||||||||| ||| ||| |||||| ||||| |||| ||||||    
T  9050050 aaaggcttaaatgctcttttgatccattaactatttaattggcatcgctttggtcccttaactaagaaaaagattgttcgagtactttaa 9050139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 483 - 516
Target Start/End: Complemental strand, 24648615 - 24648582
Alignment:
Q  483 ctcctcaccttcatcttcttcaacaaatcttcat 516  Q
    ||||||||||||||| ||||||||||||||||||    
T  24648615 ctcctcaccttcatcatcttcaacaaatcttcat 24648582  T

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Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 27098553 - 27098618
Alignment:
Q  299 ttttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  27098553 ttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 27098618  T

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Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 286 - 371
Target Start/End: Complemental strand, 42767751 - 42767666
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgagtccttta 371  Q
    ||||||| |||  |||| |||||||||||| || ||||| |||| ||||||||  ||| ||| |||||| |||||||||| |||||    
T  42767751 ggcttaaatgtgcttttggtcccttaactatttatttggtatcgatttggtcctttaactaaaaaaaagattgtttgagtacttta 42767666  T

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Target: scaffold0394 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 285 - 355
Target Start/End: Original strand, 14269 - 14340
Alignment:
Q  285 aggcttaattgttattttcgtcccttaactaa-ttttttggcatcgctttggtcccataattaataaaaagt 355  Q
    ||||||||||| |||||| ||||||||||||| |||||||| |||| ||||||||||||| ||| |||||||    
T  14269 aggcttaattgctattttagtcccttaactaatttttttggtatcggtttggtcccataactaaaaaaaagt 14340  T

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Target: scaffold0194 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 19305 - 19237
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaa 352  Q
    ||||||||||||||| ||| || |||||||||||||||||  |||| ||||||||||||| ||| ||||    
T  19305 aaggcttaattgttactttagttccttaactaattttttgatatcggtttggtcccataactaaaaaaa 19237  T

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Target: scaffold0006 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 284 - 364
Target Start/End: Complemental strand, 83446 - 83366
Alignment:
Q  284 aaggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||||| || |||||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  83446 aaggcttaaatgctattttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 83366  T

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Target: scaffold0006; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 289 - 364
Target Start/End: Original strand, 83016 - 83091
Alignment:
Q  289 ttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    |||| ||||||||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  83016 ttaaatgttattttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 83091  T

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Target: scaffold0027 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 364
Target Start/End: Original strand, 124939 - 125015
Alignment:
Q  288 cttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||| ||||||||| |||||||||||| ||  |||  |||||||||||||| ||| ||| |||||| |||||||||    
T  124939 cttaaatgttattttggtcccttaactatttaattgatatcgctttggtcccttaactaaaaaaaagattgtttgag 125015  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 364
Target Start/End: Complemental strand, 283232 - 283154
Alignment:
Q  286 ggcttaattgttattttcgtcccttaactaattttttggcatcgctttggtcccataattaataaaaagtttgtttgag 364  Q
    ||||||| || | |||| |||||||||||| ||  |||| |||||||||||||| ||| ||| |||||| |||||||||    
T  283232 ggcttaaatgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaaaaaagattgtttgag 283154  T

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