View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4530-Insertion-4 (Length: 700)
Name: NF4530-Insertion-4
Description: NF4530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4530-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 8 - 524
Target Start/End: Complemental strand, 27333782 - 27333271
Alignment:
| Q |
8 |
tagtgattatttgtgcataagggaattatgttttctaacttataagagctgattctagatcgaaaaaaggaaattcacgtgatgaataaaaggaggagat |
107 |
Q |
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| T |
27333782 |
tagtgattatttgtgcataagg-aattatgttttcgaacttataagagctgattctagatcgaaaaaaggacattcacgtgatgaataaaaggaggagat |
27333684 |
T |
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| Q |
108 |
accattccgcaaggtatgcttatttttcaatatttaaacctcacaaacaccttataaattaacttaagcgtcaatgtgtatttgcagaattttaaaggaa |
207 |
Q |
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| T |
27333683 |
accattccgcaaggtatgcttatttttcaatatttaaacctcacaaacaccttataaa----cttaagcgtcaatgtgtatttgcagaattttaaaggaa |
27333588 |
T |
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| Q |
208 |
cggatccaaccttataaagactttgagtgtcagaatattttgtaggatcttagagggaggagaaggcttaaccatgtataaggtttttcgaagaattaga |
307 |
Q |
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| T |
27333587 |
cggatccaaccttataaagactttgagtgtcagaatattttataggatcttagagggaggagaaggcttaaccatgtataaggtttttcaaagaattaga |
27333488 |
T |
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| Q |
308 |
atgcatgtggtagaattgggacgcaacaatggtattttgtgatgtaaatatcaactaatgagagaaatgtgttgagaagactcatcttcttttgttacaa |
407 |
Q |
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| T |
27333487 |
atgcatgtggtagaattgggacgcaacaatggtattttgtgatgtaaatatcaactaatgagagaaatgtgttgagaagactcatcttcttttgttacaa |
27333388 |
T |
|
| Q |
408 |
atgaatcattcatataaactatgttgttgaacaatttttcttttatttctctttatatatgtaataatgtagcatttctagatgaagtaaattaaagaga |
507 |
Q |
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| T |
27333387 |
atgaatcattcatataaactatgttgttgaacaatttttcttttatttctctttatatatgtaataatgtagcatttctagatgaagtaaattaaagaga |
27333288 |
T |
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| Q |
508 |
gagataccaaatgttta |
524 |
Q |
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| T |
27333287 |
gagataccaaatgttta |
27333271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 524 - 700
Target Start/End: Complemental strand, 27332968 - 27332792
Alignment:
| Q |
524 |
actaaatggaaaaattataactatgtgcaacacaaactcaatattttttctttcactaaaaaataaggttggtcacataataatattcatgaactaactt |
623 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27332968 |
actaaatggaaaaattataactatgtgcaacacaaacacaatattttttctttcactaaaaaataaggttggtcacataataatattcatgaactaactt |
27332869 |
T |
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| Q |
624 |
gaaaactactactaacaactaacattaaatttcacaactaccatacaccaaaacctcatcatcctttaacatgttgt |
700 |
Q |
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| T |
27332868 |
gaaaactactactaacaactaacattaaatttcacaactaccatacaccaaaacctcatcatcctttaacatgttgt |
27332792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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