View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4530_high_1 (Length: 487)
Name: NF4530_high_1
Description: NF4530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4530_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Complemental strand, 6855994 - 6855529
Alignment:
| Q |
18 |
attgttatgttgtgattttagttcattaattactgttatatgttgttatacagagaacgggtattggaatatagagatgaaagtcaaagacttgatcagt |
117 |
Q |
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| T |
6855994 |
attgttatgttgtgattttagttcattaattactgttatatgttgttatacagagaacgggtattggaatatagagatgaaagtcaaagacttgatcagt |
6855895 |
T |
|
| Q |
118 |
gtaatcgtctttatgattcgtctgtttccaacgatggatttgaggttgatgctagccacattgttcaggttatctcttagaccatataggcaaaaaagtg |
217 |
Q |
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| T |
6855894 |
gtaatcgtctttatgattcgtctgtttccaacgatggatttgaggttgatgctagccacattgttcaggttatctcttagaccatataggcaaaaaagtg |
6855795 |
T |
|
| Q |
218 |
tgcagttttatgacttttttcctcatatttatatgctaaatagacacgatataagtataatgattaatgttttctagttacggggaaataaatttaatgt |
317 |
Q |
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| T |
6855794 |
tgcagttttatgacttttttcctcaaatttatatgctaaatagacacgatataagtataaggattaatgttttctagttacggggaaataaatttaatgt |
6855695 |
T |
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| Q |
318 |
gtatgatttggtttgaatttatatgttaaacatgttctgctgacaattaacagtatcgctattgttactagagttttgcgtgcagctaaacaagagccta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6855694 |
gtatgatttggtttgaatttatatgttaaacatgttctgctgacaattaacagtatagctattgttactagagttttgcgtgcagctaaacaagagccta |
6855595 |
T |
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| Q |
418 |
atgctgtccatttctattatttgtctg------aaaacaccatacatattactataccatcctttg |
477 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
6855594 |
atgctgtccatttctattatttgtctgttaacagaaacaacatacatattactataccatcctttg |
6855529 |
T |
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