View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4530_high_10 (Length: 237)
Name: NF4530_high_10
Description: NF4530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4530_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 7377193 - 7376965
Alignment:
| Q |
1 |
attgctagtttagttagtttgttattcttaacaaactaactgtaattaatttattgagactgatcctatactctaataattaaaaa-acagaaaatagga |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
7377193 |
attgctagtttagttagtttgttattcttaacaaactaactgtaattaatttattgagactgatcctatactctaataattaaaaacagagaaaatagga |
7377094 |
T |
|
| Q |
100 |
agaaacctcatgtgtgtatgatgttgtaaaccttcagtgaccattagta-----ctgatgatccaactaccatccccttttctaaccagacgaccaaagt |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7377093 |
agaaacctcatgtgtgtatgatgttgtaaaccttcagtgaccattagtactgatctgatgatccaactaccatccccttttctaaccagacgaccaaaat |
7376994 |
T |
|
| Q |
195 |
ctattcgaatcgtcatgacaacaaccatc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
7376993 |
ctattcgaatcgtcatgacaacaaccatc |
7376965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 7368194 - 7368068
Alignment:
| Q |
1 |
attgctagtttagttagtttgttattcttaacaaactaactgtaattaatttattgagactgatcctatactctaata-atta-aaaaacagaaaatagg |
98 |
Q |
| |
|
|||| |||||||||| |||||||||||||||| | | | || ||| ||| ||||||||| |||| |||||||||||| |||| ||| | |||||||||| |
|
|
| T |
7368194 |
attgttagtttagttggtttgttattcttaacgagcaacctataactaacttattgagagtgattatatactctaatacattagaaacaaagaaaatagg |
7368095 |
T |
|
| Q |
99 |
aagaaacctcatgtgtgtatgatgttgt |
126 |
Q |
| |
|
||||||| || | ||||| ||||||||| |
|
|
| T |
7368094 |
aagaaacttc-tatgtgtgtgatgttgt |
7368068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University