View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4530_high_7 (Length: 256)

Name: NF4530_high_7
Description: NF4530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4530_high_7
NF4530_high_7
[»] chr2 (34 HSPs)
chr2 (1-240)||(36059668-36059908)
chr2 (1-240)||(13997375-13997614)
chr2 (1-240)||(17117408-17117648)
chr2 (19-240)||(39081476-39081696)
chr2 (12-131)||(38599473-38599592)
chr2 (1-163)||(1418970-1419132)
chr2 (1-173)||(18172773-18172943)
chr2 (1-169)||(29480471-29480640)
chr2 (1-240)||(1226030-1226269)
chr2 (1-168)||(18915889-18916057)
chr2 (1-173)||(38985540-38985712)
chr2 (21-173)||(15457582-15457734)
chr2 (1-240)||(21746994-21747233)
chr2 (4-168)||(31273002-31273166)
chr2 (18-100)||(38599593-38599675)
chr2 (1-157)||(36481455-36481611)
chr2 (21-173)||(2063887-2064039)
chr2 (1-157)||(26151595-26151750)
chr2 (1-157)||(45619037-45619192)
chr2 (1-239)||(4856054-4856293)
chr2 (63-157)||(9029718-9029812)
chr2 (14-157)||(18676158-18676299)
chr2 (65-155)||(12269551-12269639)
chr2 (17-141)||(41096400-41096523)
chr2 (17-157)||(42411406-42411544)
chr2 (17-157)||(7993711-7993848)
chr2 (93-157)||(6530812-6530875)
chr2 (26-157)||(13001723-13001855)
chr2 (1-157)||(42759604-42759759)
chr2 (112-169)||(26261446-26261504)
chr2 (90-171)||(4264709-4264789)
chr2 (90-173)||(24233653-24233735)
chr2 (63-141)||(27302400-27302476)
chr2 (189-240)||(7993881-7993933)
[»] chr7 (36 HSPs)
chr7 (1-173)||(26633424-26633596)
chr7 (1-238)||(36438117-36438354)
chr7 (10-173)||(40737832-40737994)
chr7 (1-240)||(1366070-1366310)
chr7 (1-173)||(773714-773887)
chr7 (1-237)||(25610127-25610362)
chr7 (63-173)||(3799594-3799702)
chr7 (1-120)||(7366748-7366867)
chr7 (1-171)||(32956836-32956998)
chr7 (4-173)||(42312073-42312243)
chr7 (4-215)||(41852090-41852300)
chr7 (4-173)||(40841073-40841245)
chr7 (3-173)||(30739186-30739358)
chr7 (1-173)||(28589976-28590146)
chr7 (21-240)||(40001474-40001694)
chr7 (1-169)||(41908239-41908407)
chr7 (1-157)||(12251135-12251291)
chr7 (17-157)||(42160970-42161108)
chr7 (17-240)||(44875922-44876143)
chr7 (65-240)||(29730852-29731021)
chr7 (65-240)||(29741926-29742095)
chr7 (1-157)||(46221550-46221706)
chr7 (1-239)||(33910125-33910365)
chr7 (17-157)||(33418964-33419103)
chr7 (17-157)||(36796219-36796357)
chr7 (112-173)||(44002764-44002825)
chr7 (81-153)||(26282391-26282463)
chr7 (75-141)||(21145491-21145555)
chr7 (17-157)||(6379932-6380070)
chr7 (18-173)||(7636153-7636310)
chr7 (65-157)||(18015428-18015517)
chr7 (94-153)||(4100112-4100170)
chr7 (185-240)||(40737761-40737816)
chr7 (1-67)||(18895334-18895400)
chr7 (115-173)||(28105789-28105847)
chr7 (205-239)||(44893791-44893825)
[»] chr6 (20 HSPs)
chr6 (1-173)||(6294315-6294489)
chr6 (11-173)||(30915192-30915354)
chr6 (1-240)||(1092804-1093044)
chr6 (1-240)||(29308230-29308470)
chr6 (1-173)||(3748399-3748571)
chr6 (1-153)||(21946168-21946317)
chr6 (76-173)||(11088706-11088804)
chr6 (1-173)||(350476-350651)
chr6 (1-157)||(3514698-3514853)
chr6 (21-141)||(31861067-31861186)
chr6 (19-157)||(6360839-6360975)
chr6 (17-157)||(2618433-2618570)
chr6 (1-173)||(57749-57917)
chr6 (97-240)||(1690480-1690624)
chr6 (1-169)||(19231673-19231854)
chr6 (189-240)||(22503993-22504045)
chr6 (1-40)||(11088608-11088647)
chr6 (189-239)||(29401388-29401439)
chr6 (74-141)||(12614582-12614646)
chr6 (1-95)||(29149464-29149560)
[»] chr1 (39 HSPs)
chr1 (3-237)||(44836492-44836726)
chr1 (1-162)||(13120708-13120869)
chr1 (1-240)||(17674117-17674357)
chr1 (1-173)||(50371195-50371367)
chr1 (1-240)||(37873519-37873765)
chr1 (1-173)||(26486206-26486376)
chr1 (11-173)||(22386667-22386829)
chr1 (8-168)||(15441358-15441516)
chr1 (1-173)||(24556867-24557035)
chr1 (1-240)||(42740171-42740406)
chr1 (1-173)||(27703365-27703532)
chr1 (1-237)||(12971467-12971704)
chr1 (63-173)||(9777537-9777648)
chr1 (1-240)||(28885433-28885674)
chr1 (1-237)||(25930665-25930902)
chr1 (17-157)||(18127785-18127923)
chr1 (19-157)||(50552575-50552711)
chr1 (1-239)||(68-310)
chr1 (1-173)||(30004737-30004910)
chr1 (17-170)||(5560561-5560713)
chr1 (1-157)||(48722214-48722373)
chr1 (17-157)||(30899736-30899876)
chr1 (25-160)||(1269634-1269772)
chr1 (1-128)||(6333396-6333519)
chr1 (17-157)||(14084547-14084686)
chr1 (1-157)||(10109781-10109940)
chr1 (93-173)||(39080452-39080531)
chr1 (1-239)||(17487042-17487286)
chr1 (18-141)||(6150800-6150922)
chr1 (2-111)||(31369302-31369406)
chr1 (17-173)||(52055630-52055786)
chr1 (19-173)||(20905115-20905271)
chr1 (65-173)||(52240366-52240473)
chr1 (1-157)||(29207946-29208101)
chr1 (94-157)||(33124489-33124551)
chr1 (17-157)||(51109949-51110087)
chr1 (206-239)||(20905049-20905082)
chr1 (206-239)||(48722129-48722162)
chr1 (207-239)||(6150991-6151023)
[»] chr5 (35 HSPs)
chr5 (1-240)||(17325906-17326146)
chr5 (1-173)||(7390232-7390403)
chr5 (6-159)||(10033613-10033770)
chr5 (2-240)||(33281736-33281974)
chr5 (1-173)||(18873518-18873693)
chr5 (1-173)||(43511679-43511851)
chr5 (1-240)||(3349492-3349732)
chr5 (1-236)||(17513703-17513939)
chr5 (2-173)||(27351411-27351582)
chr5 (1-240)||(10591038-10591276)
chr5 (1-173)||(29156251-29156423)
chr5 (1-165)||(8379282-8379445)
chr5 (54-240)||(16515619-16515806)
chr5 (1-141)||(4734444-4734585)
chr5 (17-173)||(138221-138377)
chr5 (1-173)||(20976046-20976218)
chr5 (1-101)||(40956374-40956475)
chr5 (1-240)||(42291643-42291884)
chr5 (1-173)||(5829444-5829614)
chr5 (65-173)||(23069350-23069457)
chr5 (1-141)||(40779252-40779391)
chr5 (97-173)||(4177358-4177433)
chr5 (17-157)||(12661387-12661524)
chr5 (1-157)||(13423925-13424081)
chr5 (1-157)||(13474691-13474846)
chr5 (17-157)||(26377622-26377759)
chr5 (63-173)||(26312113-26312221)
chr5 (90-173)||(17462993-17463078)
chr5 (112-173)||(13288615-13288676)
chr5 (63-172)||(19099145-19099253)
chr5 (2-240)||(931437-931670)
chr5 (63-157)||(37046906-37046997)
chr5 (123-173)||(16061081-16061131)
chr5 (206-239)||(13474898-13474931)
chr5 (206-239)||(26377539-26377572)
[»] chr3 (34 HSPs)
chr3 (1-240)||(46904803-46905043)
chr3 (18-240)||(7767144-7767367)
chr3 (1-168)||(27303248-27303413)
chr3 (17-173)||(51147015-51147170)
chr3 (1-240)||(43905616-43905856)
chr3 (1-240)||(40151895-40152132)
chr3 (1-110)||(42009156-42009265)
chr3 (1-157)||(24252681-24252837)
chr3 (1-240)||(48626792-48627032)
chr3 (1-131)||(50677187-50677317)
chr3 (17-165)||(19965716-19965867)
chr3 (1-173)||(28132566-28132738)
chr3 (1-172)||(21596396-21596566)
chr3 (17-173)||(25598912-25599073)
chr3 (17-157)||(23164420-23164558)
chr3 (17-157)||(52654970-52655109)
chr3 (17-157)||(21784627-21784769)
chr3 (1-173)||(1254892-1255055)
chr3 (17-154)||(27110723-27110858)
chr3 (18-157)||(51939403-51939540)
chr3 (1-157)||(6715500-6715655)
chr3 (1-141)||(18408252-18408391)
chr3 (1-157)||(29387601-29387757)
chr3 (97-240)||(1649604-1649749)
chr3 (17-141)||(27729633-27729755)
chr3 (74-141)||(15998418-15998483)
chr3 (1-81)||(36538109-36538189)
chr3 (1-141)||(54430613-54430754)
chr3 (63-141)||(46791561-46791636)
chr3 (3-61)||(15987263-15987321)
chr3 (63-157)||(8364298-8364389)
chr3 (94-157)||(20762203-20762266)
chr3 (204-237)||(27110636-27110669)
chr3 (188-240)||(51147187-51147239)
[»] chr8 (27 HSPs)
chr8 (1-153)||(3628598-3628750)
chr8 (17-173)||(42076187-42076342)
chr8 (17-163)||(36514996-36515142)
chr8 (1-173)||(12531620-12531792)
chr8 (1-169)||(32098012-32098181)
chr8 (1-240)||(34523717-34523954)
chr8 (37-169)||(35874996-35875128)
chr8 (1-137)||(29372418-29372554)
chr8 (1-160)||(39697782-39697941)
chr8 (1-141)||(23567138-23567277)
chr8 (1-157)||(13585360-13585515)
chr8 (89-173)||(33452908-33452992)
chr8 (1-157)||(18420456-18420612)
chr8 (1-160)||(42777806-42777966)
chr8 (74-237)||(30915052-30915217)
chr8 (17-157)||(1004138-1004272)
chr8 (1-173)||(43926155-43926326)
chr8 (1-157)||(43967918-43968073)
chr8 (93-173)||(12268755-12268834)
chr8 (63-157)||(3445660-3445751)
chr8 (63-173)||(3471725-3471833)
chr8 (74-157)||(42951643-42951723)
chr8 (1-157)||(7858146-7858300)
chr8 (185-240)||(35875147-35875202)
chr8 (206-239)||(3445800-3445833)
chr8 (206-239)||(13585573-13585606)
chr8 (189-236)||(7858334-7858382)
[»] chr4 (25 HSPs)
chr4 (1-173)||(35653811-35653983)
chr4 (1-240)||(21791313-21791550)
chr4 (1-141)||(10575386-10575526)
chr4 (37-169)||(24449196-24449328)
chr4 (1-237)||(5545390-5545625)
chr4 (1-240)||(55134269-55134510)
chr4 (18-140)||(22423764-22423886)
chr4 (1-136)||(45172514-45172648)
chr4 (14-157)||(19661454-19661595)
chr4 (1-157)||(23426014-23426169)
chr4 (3-173)||(26328860-26329032)
chr4 (1-157)||(41038311-41038465)
chr4 (19-239)||(11681505-11681726)
chr4 (19-239)||(11689784-11690005)
chr4 (1-173)||(34982285-34982457)
chr4 (1-157)||(53011773-53011931)
chr4 (1-157)||(32130638-32130793)
chr4 (63-157)||(27632523-27632614)
chr4 (1-157)||(28463436-28463591)
chr4 (43-173)||(16887813-16887943)
chr4 (1-157)||(29221469-29221624)
chr4 (185-240)||(24449347-24449402)
chr4 (189-239)||(23256847-23256897)
chr4 (17-157)||(44478118-44478256)
chr4 (1-115)||(51066314-51066427)
[»] scaffold0564 (1 HSPs)
scaffold0564 (1-157)||(1122-1278)
[»] scaffold0035 (1 HSPs)
scaffold0035 (17-157)||(22653-22791)
[»] scaffold0034 (1 HSPs)
scaffold0034 (107-240)||(99083-99219)
[»] scaffold0126 (1 HSPs)
scaffold0126 (17-157)||(16788-16926)
[»] scaffold0100 (1 HSPs)
scaffold0100 (207-239)||(45939-45971)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 36059908 - 36059668
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36059908 caatcatttcttttttgcataaaccattcgttttcccttttcccacgacgtatgagtgacattccaaacgacgccgttacgtaaattttacctctctttc 36059809  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac-nnnnnnnnnttgcgtttttattttac 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||          |||||||||||||||||    
T  36059808 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagtttagctacaaaaaaaaaattgcgtttttattttac 36059709  T
Q  200 tggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    ||||  |||||||||||| ||| ||||||||||||||||||    
T  36059708 tggtacctattttaaaaaaagagtcgagcctcctatttcat 36059668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 13997375 - 13997614
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||| |||||||||| |||||||||||||||||||||||| || || |||||||||||||||||||||| || |  |||||||||||| || ||||||||    
T  13997375 caattatttctttttcgcataaaccattcgttttcccttt-cctacgacgtatgagtgacattccaaacaacacatttaggtaaatttcacatctctttc 13997473  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac-nnnnnnnnnttgcgtttttattttac 199  Q
    ||||||| || |||||||||||||  |||||| |||||||| ||| |||||||||||||||||||||||||||          ||||||||| |||||||    
T  13997474 acttaatcttgttttattttgttttgtgtttaaaagttcttctgattctgattttttaatgaagcttagctacacaaaaagaattgcgttttgattttac 13997573  T
Q  200 tggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    ||  | |||||||||||| |||  |||||||||||||||||    
T  13997574 tgtggcctattttaaaaatagaaccgagcctcctatttcat 13997614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 17117648 - 17117408
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||||||||||||||   ||||||||||||||||||| |||||||||||| || |||||||  |||||||||| ||||||| |||||| |||||||||||    
T  17117648 caatcatttctttttcatataaaccattcgttttcccctttcccacaacggataagtgacaaatccaaacgacaccgttag-taaattctacctctcttt 17117550  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttattttac 199  Q
    ||||||||||| || ||||| |||||||||||||||| |||| ||| |||||||||||||| ||||||||||||         |||| |||||||||||     
T  17117549 cacttaatttttttgtatttcgtttcatgtttagaagctcttctgattctgattttttaataaagcttagctacacaaaaaaattgcatttttattttat 17117450  T
Q  200 t-ggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    | || | |||||||||| |||||  |||||||||||||||||    
T  17117449 tgggggcctattttaaatagagagccgagcctcctatttcat 17117408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 39081476 - 39081696
Alignment:
Q  19 ataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttatt 118  Q
    |||||||||| |||||||| ||||| || ||||| ||||||||||||||| ||| |  |||||||||||| |||||||||||||||||||||||||| ||    
T  39081476 ataaaccattagttttcccctttcctacgacgtaggagtgacattccaaatgacaca-ttaggtaaatttcacctctctttcacttaattttattttgtt 39081574  T
Q  119 ttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttattttactggtgtctattttaaaaag 218  Q
    ||||||||| |||| |||||||| ||| ||||||||| |||||||||||| ||||         ||  ||||||||||||||||   ||||||||||||     
T  39081575 ttgtttcatatttaaaagttcttatgattctgattttataatgaagcttaactacacaaaaaaattatgtttttattttactgggacctattttaaaaat 39081674  T
Q  219 agattcgagcctcctatttcat 240  Q
    |||  ||| |||||||||||||    
T  39081675 agaaccgaacctcctatttcat 39081696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 38599473 - 38599592
Alignment:
Q  12 tttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttcacttaatttta 111  Q
    ||||| |||||||||||||||||||| |||||||| ||||||||||| |||| |||||||| ||||||||||||||| | ||||||||||||||||||||    
T  38599473 ttttttcataaaccattcgttttcccctttcccacgacgtatgagtggcatttcaaacgacaccgttaggtaaatttcatctctctttcacttaatttta 38599572  T
Q  112 ttttattttgtttcatgttt 131  Q
    ||||||||| ||||||||||    
T  38599573 ttttattttatttcatgttt 38599592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 1418970 - 1419132
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||| |||||||||| |||||||| |||| ||||  | ||||| |  ||||||||||||||||||||| ||| ||||||||||||||| || ||||||||    
T  1418970 caattatttctttttcgcataaactattcattttttcctttcctatgacgtatgagtgacattccaaatgacaccgttaggtaaatttcacttctctttc 1419069  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaa 163  Q
    ||||||||||||||| |||||||||||||||| |||||||| ||| | ||| |||||||||||    
T  1419070 acttaattttattttgttttgtttcatgtttaaaagttcttctgattttgactttttaatgaa 1419132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 18172943 - 18172773
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||||||||||||||  |||||||||||||||||||| |||||||||||| || |||||| | |||||||||||||||| |||||||| |||||||||||    
T  18172943 caatcatttctttttcacataaaccattcgttttcccctttcccacaacggataagtgacaaatccaaacgacgccgtt-ggtaaattctacctctcttt 18172845  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    |||  |||||| || ||||| |||||||||||||||  |||| ||| |||||||||||||| |||||| |||||    
T  18172844 cac--aatttttttgtatttcgtttcatgtttagaaactcttctgattctgattttttaataaagcttggctac 18172773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 29480640 - 29480471
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||| |||||||||| |||||||||||| || ||||| ||||  || || || ||||||||||||||||||| |||||||||||| || |||||||||||    
T  29480640 caattatttctttttcgcataaaccatttgtcttcccctttcttacgacataggagtgacattccaaacgacaccgttaggtaaagttcacctctctttc 29480541  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatt-ttttaatgaagcttag 169  Q
    ||||||||||||||| ||||||||| | |||| |||||||| ||| ||||||| ||||||||||| ||||    
T  29480540 acttaattttattttgttttgtttcgtatttaaaagttcttctgattctgatttttttaatgaagattag 29480471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 1226269 - 1226030
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    ||||||||||||||| |||||||||||| |||||||  |  ||||||||| | || | | |  ||||||||||  |||||||||||||| | ||||||||    
T  1226269 caatcatttctttttcgcataaaccatttgttttcc--taccccacaacgaaggaatcataaatccaaacgacatcgttaggtaaatttcatctctcttt 1226172  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatt-ttttaatgaagcttagctac-nnnnnnnnnttgcgtttttatttt 197  Q
    ||||||||||| |||||||| ||||||||||||||||||||| | | ||||||| ||||||||||| ||||||||          ||  |||||||||||    
T  1226171 cacttaatttttttttatttcgtttcatgtttagaagttcttctaattctgatttttttaatgaagtttagctacacaaaaaaaattatgtttttatttt 1226072  T
Q  198 actggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    |  || | |||||||||||||||| ||||||||||||||||||    
T  1226071 a-aggggcctattttaaaaagagagtcgagcctcctatttcat 1226030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 18916057 - 18915889
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat--tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    |||||||||||||||  ||||||| ||| ||||| || |||||||||||| || ||||| |   || ||||||||||||||| |||||| ||||||||||    
T  18916057 caatcatttctttttcacataaactatttgtttttccctttcccacaacggataagtgataaaatcgaaacgacgccgttag-taaattctacctctctt 18915959  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagctta 168  Q
    |||||||||||| || ||||| |||||||||||||||| |||| ||| |||  ||||||||| |||||||    
T  18915958 tcacttaatttttttgtatttcgtttcatgtttagaagctcttctgattctatttttttaataaagctta 18915889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 38985712 - 38985540
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||||||||||||||  |||||| |||| |||||||| ||| |||||||| || |||||||  |||||| ||||||||||| | |||| ||| |||||||    
T  38985712 caatcatttctttttcacataaaacatttgttttccccttttccacaacggataagtgacaaatccaaaagacgccgttag-tgaattctacatctcttt 38985614  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    ||||||||||| || ||||| ||||||| |||||||  |||| ||| |||||||||||||| ||||||| ||||    
T  38985613 cacttaatttttttgtatttcgtttcatttttagaaactcttctgattctgattttttaataaagcttaactac 38985540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 173
Target Start/End: Original strand, 15457582 - 15457734
Alignment:
Q  21 aaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttattt 119  Q
    ||||||||||||||||| |||||||||||| |  |||||||  |||||||||||| ||||| |||||| || ||||||||||||||||||| || | |||    
T  15457582 aaaccattcgttttcccctttcccacaacggacaagtgacaaatccaaacgacgctgttag-taaattctatctctctttcacttaatttttttgttttt 15457680  T
Q  120 tgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
     |||||||||| ||||| |||| | | | |||||||||||| ||||||||||||    
T  15457681 cgtttcatgttcagaagctcttcttattttgattttttaataaagcttagctac 15457734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 21747233 - 21746994
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||| ||||||||||  ||||||||||||||||| || |||||||||||  || ||||| |  | |||||||||||||||| |||||| |||||||||||    
T  21747233 caataatttctttttcacataaaccattcgtttttccctttcccacaacagataagtgagaaattcaaacgacgccgttag-taaattctacctctcttt 21747135  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttattttac 199  Q
    |||| |||||| || ||||| |||||||||||| ||| |||| ||| |||  ||||||||| |||||||  |||         ||| ||||||||||||     
T  21747134 cactgaatttt-ttgtatttcgtttcatgtttaaaagctcttttgattctatttttttaataaagcttaattacacaaaaaaattgtgtttttattttat 21747036  T
Q  200 tggtg-tctattttaaaaagagattcgagcctcctatttcat 240  Q
    ||| |  |||||||||| |||||  |||||||||||||||||    
T  21747035 tggagacctattttaaatagagagccgagcctcctatttcat 21746994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 168
Target Start/End: Complemental strand, 31273166 - 31273002
Alignment:
Q  4 tcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcac 102  Q
    |||||||||||| |||||||||||| ||||| |  |||||||||||  |  |||||||  |||||||||| | ||||||||||||| || |||||||| |    
T  31273166 tcatttctttttcgcataaaccatttgtttttctctttcccacaacagaaaagtgacaaatccaaacgacacagttaggtaaatttcacttctctttcgc 31273067  T
Q  103 ttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagctta 168  Q
    |||||||| | ||| || |||| || ||||||||||||| ||| | ||||||||||||||||||||    
T  31273066 ttaatttt-tcttaattcgtttaatttttagaagttcttctgattttgattttttaatgaagctta 31273002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 38599593 - 38599675
Alignment:
Q  18 cataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||||||||||||||||||| |||||||| ||||||||||| |||| |||||||| ||||||||||||||| | |||||||||    
T  38599593 cataaaccattcgttttcccctttcccacgacgtatgagtggcatttcaaacgacaccgttaggtaaatttcatctctctttc 38599675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 36481455 - 36481611
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || ||||||||||||| |||| || ||| |||||||  | ||||||||  |||||||||| ||| ||| ||||||| ||||||  |    
T  36481455 caatcatttttttcttcgcataaaccattcattttacccttttccacaacagaggagtgacaaatccaaacgacaccggtagataaatttcacctct--t 36481552  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||||| ||||| ||  |||||||||||||||||||| ||| |||||||||||    
T  36481553 tcacttaatttttttttaattcctttcatgtttagaagttcttctgattctgatttttt 36481611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 173
Target Start/End: Original strand, 2063887 - 2064039
Alignment:
Q  21 aaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttattt 119  Q
    |||||||||||||| |||||| |||||||  | ||||||||  | |||||||| ||||||| ||||||| ||||||  ||||||||||||| ||||| ||    
T  2063887 aaaccattcgttttacctttttccacaacagaggagtgacaaattcaaacgacaccgttagataaatttcacctct--ttcacttaatttttttttaatt 2063984  T
Q  120 tgtttcatgtttagaagttcttgtgaatctga-ttttttaatgaagcttagctac 173  Q
      || ||| |||||||| |||| ||| ||||| ||||||||||||| ||||||||    
T  2063985 ccttccatatttagaaggtcttctgattctgatttttttaatgaagtttagctac 2064039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 26151750 - 26151595
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| || ||| | |||||  | ||||||||  |||||||||| ||||||| ||||||| ||||||  |    
T  26151750 caatcatttttttcttcgcataaaccattcgttttacccttttctacaacagaggagtgacaaatccaaacgacaccgttagataaatttcacctct--t 26151653  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||||| ||||| ||  |||||||||||||| ||||| ||| |||||||||||    
T  26151652 tcacttaatttt-ttttaattactttcatgtttagaacttcttctgattctgatttttt 26151595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 45619037 - 45619192
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||| ||||| || ||| |||||||  | ||||||||  |||||||||| ||||||| ||||||| ||||||  |    
T  45619037 caatcatttttttcttcgcataaaccatttgttttacccttttccacaacagaggagtgacaaatccaaacgacaccgttagataaatttcacctct--t 45619134  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||||| ||||| ||  |||||||||||||| ||||| ||| |||||||||||    
T  45619135 tcacttaatttt-ttttaattcctttcatgtttagaacttcttctgattctgatttttt 45619192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 4856054 - 4856293
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || ||||||||||||||||||  | ||| |||||||  | ||||||||  ||||||||||   ||||| ||||||| ||||||  |    
T  4856054 caatcatttttttcttcgcataaaccattcgttttaaccttttccacaacagaggagtgacaaatccaaacgacattgttagataaatttcacctct--t 4856151  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctga--ttttttaatgaagcttagctacnnnnnnnnnttgcgtttttattt 196  Q
    |||||||||||| ||||| ||  |||||||||||||| ||||| ||| |||||  ||||||||||||  ||||||||         || || ||||||||    
T  4856152 tcacttaatttt-ttttaattcctttcatgtttagaacttcttctgattctgattttttttaatgaaatttagctacacaaaaaaattacg-ttttattt 4856249  T
Q  197 tact-ggtgtctattttaaaaagagattcgagcctcctatttca 239  Q
    |||| || | |||||||||||||||| |||||||||||||||||    
T  4856250 tactaggggcctattttaaaaagagagtcgagcctcctatttca 4856293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 157
Target Start/End: Original strand, 9029718 - 9029812
Alignment:
Q  63 tccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||| ||||| ||||||||| |||||||||||||||| |  | |||||||| ||||||||||||||||||||  ||| | |||||||||    
T  9029718 tccaaacgacaccgtttggtaaatttcacctctctttcacttattaattttttatttcgtttcatgtttagaagttctattgattatgatttttt 9029812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 18676299 - 18676158
Alignment:
Q  14 tttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttat 112  Q
    ||||||||||||||||||||| || ||| ||||||   | ||||||||  | |||||||| ||||||| |||| || ||||||  ||||||||||||| |    
T  18676299 tttgcataaaccattcgttttacccttttccacaaaagaggagtgacaaattcaaacgacaccgttagataaagttcacctct--ttcacttaatttt-t 18676203  T
Q  113 tttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||| ||  |||||||||||||||||||| ||| |||||||||||    
T  18676202 tttaattcctttcatgtttagaagttcttctgattctgatttttt 18676158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 12269551 - 12269639
Alignment:
Q  65 caaacgacgccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttt 155  Q
    |||||||| ||||||| ||||||| ||||||  ||||||||||||| ||||| ||  |||||||||||||||||||| ||| |||||||||    
T  12269551 caaacgacaccgttagataaatttcacctct--ttcacttaatttttttttaattcctttcatgtttagaagttcttctgattctgatttt 12269639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 41096523 - 41096400
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||| ||||||||||||| || ||| |||||||  | ||||||||  |||||||||| ||||||| ||||||| ||||||  |||||||| |||| ||||    
T  41096523 gcattaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacgacaccgttagataaatttcacctct--ttcacttatttttttttt 41096426  T
Q  116 attttgtttcatgtttagaagttctt 141  Q
    | ||  ||||||||||||||||||||    
T  41096425 aattcctttcatgtttagaagttctt 41096400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 42411544 - 42411406
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||||||||||||||||| || |||  ||||||  | |||||| |  |||||||||| ||||||| ||||||| ||||||  ||||||||||| | ||||    
T  42411544 gcataaaccattcgttttaccctttttcacaacagaggagtgaaaaatccaaacgacaccgttagataaatttaacctct--ttcacttaattat-tttt 42411448  T
Q  116 attttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    | ||| ||||||||||| |||||||| ||| |||||||||||    
T  42411447 aatttctttcatgtttaaaagttcttctgattctgatttttt 42411406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 7993711 - 7993848
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||||||||||||||||| || ||| ||||||   | ||||||||  |||||||||| ||||||| ||||||| || |||  |||||||| ||||  |||    
T  7993711 gcataaaccattcgttttacccttttccacaatagaggagtgacaaatccaaacgacaccgttagataaatttcacatct--ttcacttattttt--ttt 7993806  T
Q  116 attttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    | ||  |||||||||||||||||||| ||| |||||||||||    
T  7993807 aattcctttcatgtttagaagttcttctgattctgatttttt 7993848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 6530812 - 6530875
Alignment:
Q  93 tctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||||||||||| ||||| ||  |||||||||||||||||||| ||| |||||||||||    
T  6530812 tctctttcacttaatttt-ttttaattcctttcatgtttagaagttcttttgattctgatttttt 6530875  T

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Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 13001723 - 13001855
Alignment:
Q  26 attcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttattttgttt 124  Q
    |||||||||| | |||||||||||  | ||||||||  |||||||||| | ||| ||||||||  || ||||||||||||| |  | |||||||| ||||    
T  13001723 attcgttttctcctttcccacaacaaaggagtgacaaatccaaacgacactgttcggtaaattgcacttctctttcacttattaattttttatttcgttt 13001822  T
Q  125 catgtttagaagttcttgtgaatctgatttttt 157  Q
    | ||||||||| ||||  ||| |||||||||||    
T  13001823 cgtgtttagaaattctattgattctgatttttt 13001855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 42759759 - 42759604
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| || ||| ||||||   | | ||||||  | |||||||| ||||||| ||||||  |  ||||||    
T  42759759 caatcatttttttcttcgcataaaccattcgttttacccttttccacaatagaggggtgacaaattcaaacgacaccgttagataaattcca--tctctt 42759662  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||||| ||||| ||  |||||||||||||| ||||| ||| |||||||||||    
T  42759661 tcacttaatttt-ttttaattcctttcatgtttagaacttcttctgattctgatttttt 42759604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 26261446 - 26261504
Alignment:
Q  112 ttttattttgtttcatgtttagaagttcttgtgaatctga-ttttttaatgaagcttag 169  Q
    |||||||| ||||||||||||||||||||| ||| | ||| ||||||||||||||||||    
T  26261446 ttttatttcgtttcatgtttagaagttcttatgattatgatttttttaatgaagcttag 26261504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 4264789 - 4264709
Alignment:
Q  90 acctctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagct 171  Q
    ||||||||||| |||||| || ||||||||  |||||| ||||||||||||| ||| ||| ||||||| |||||| ||||||    
T  4264789 acctctctttcgcttaatatt-ttttatttcatttcatctttagaagttcttttgattctaattttttgatgaagtttagct 4264709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 24233735 - 24233653
Alignment:
Q  90 acctctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    ||||||||||| ||||||||| ||| |||| ||| ||||||||||||||||| | | |||||||| |  ||| |||||||||||    
T  24233735 acctctctttcgcttaatttt-tttgatttcgttgcatgtttagaagttcttctaattctgatttgtgtatgtagcttagctac 24233653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 141
Target Start/End: Complemental strand, 27302476 - 27302400
Alignment:
Q  63 tccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttctt 141  Q
    ||||||||||  |||||||||||||| |||| | |||||||||||||  ||| |||| ||||||||||||  |||||||    
T  27302476 tccaaacgacaacgttaggtaaatttcacctttatttcacttaattt--tttaatttcgtttcatgtttattagttctt 27302400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 7993881 - 7993933
Alignment:
Q  189 ttttattttact-ggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    |||||||||||| |||| ||||||||||||||||  ||| |||||||||||||    
T  7993881 ttttattttactaggtgcctattttaaaaagagagccgaacctcctatttcat 7993933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 26633424 - 26633596
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    ||||||||||||||| ||||||||||||| |||| || |||||||| ||||||||||||||||||||||||| |||||| |||||||| |||||||||||    
T  26633424 caatcatttctttttcgcataaaccattcatttttccctttcccacgacgtatgagtgacattccaaacgacaccgttaagtaaatttcacctctctttc 26633523  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    |||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||    
T  26633524 acttaattttattttattttgtttcatgtttagacgttcttctgattctgattttttaatgaagcttagctac 26633596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 36438354 - 36438117
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||| |||| |||||  |||||||||||||||||||||||||| || ||||| ||||||||||||||| ||| ||||||||||||||| |||| ||||||    
T  36438354 caataatttatttttcacataaaccattcgttttcccttttcctacgacgtaggagtgacattccaaatgacaccgttaggtaaatttcacctatctttc 36438255  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttattttact 200  Q
    ||||||||||||||| |||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||         |||| |||||||||||||    
T  36438254 acttaattttattttgttttgtttcatgtttaaaagttcttctgattctgattttttaatgaagcttagctacacacaaaaattgcatttttattttact 36438155  T
Q  201 ggtgtctattttaaaaagagattcgagcctcctatttc 238  Q
    |  | |||||||||||| |||  |||||||||||||||    
T  36438154 gaggcctattttaaaaatagaaccgagcctcctatttc 36438117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 10 - 173
Target Start/End: Complemental strand, 40737994 - 40737832
Alignment:
Q  10 cttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttcacttaattt 109  Q
    |||||| |||||||| |||||||||||| ||||| || ||||| |||||||||| |||| ||| ||||||||||||||| ||||||||||||||| ||||    
T  40737994 ctttttcgcataaactattcgttttcccctttcctacgacgtaggagtgacatttcaaatgacaccgttaggtaaatttcacctctctttcactttattt 40737895  T
Q  110 tattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    |||||||||||||||||| |||| |||||||| ||| ||||| |||||||||||||||||||||    
T  40737894 tattttattttgtttcat-tttaaaagttcttttgattctgactttttaatgaagcttagctac 40737832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 1366070 - 1366310
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||||||||||||||  |||||||||||||||||||| |||||||||||| || | |||||| | |||| ||| ||||| | |||||| |||||||||||    
T  1366070 caatcatttctttttcacataaaccattcgttttcccctttcccacaacggataattgacatattcaaatgacaccgtttg-taaattctacctctcttt 1366168  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttattttac 199  Q
    ||||||||||| || ||||| |||||||||||| ||| |||| ||| |||||||||||||| ||||||||||||         || |||||||||||||     
T  1366169 cacttaatttttttgtatttcgtttcatgtttacaagctcttctgattctgattttttaataaagcttagctacacaaaaaaattacgtttttattttat 1366268  T
Q  200 tggtg-tctattttaaaaagagattcgagcctcctatttcat 240  Q
    ||| | ||||||||||| |||||  ||||||| |||||||||    
T  1366269 tggggatctattttaaatagagagccgagccttctatttcat 1366310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 773887 - 773714
Alignment:
Q  1 caatcatttcttttttg--cataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctct 97  Q
    ||||||||| |||||||  ||||||||||||||||||||||| || |||||| | |||| |||  | |||||||||||||||||||||||| || |||||    
T  773887 caatcattttttttttgtgcataaaccattcgttttcccttt-ccaacaacggaggagtcacaaattcaaacgacgccgttaggtaaatttcacatctct 773789  T
Q  98 ttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    ||||||||||||| |||||||| ||||||||||||||||||||| ||| | |||||||||||||||||||| ||||    
T  773788 ttcacttaatttt-ttttatttcgtttcatgtttagaagttcttctgattttgattttttaatgaagcttaactac 773714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 25610127 - 25610362
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||||||||||||||  ||||||||| | |||||||| |||||||||| | ||  ||||||  |||||||||| ||||||| |||||| || ||||||||    
T  25610127 caatcatttctttttcacataaaccaatagttttcccctttcccacaatggataggtgacaaatccaaacgacaccgttag-taaattctatctctcttt 25610225  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttattttac 199  Q
    ||||||||||| || ||||| ||||||||||| |||| |||| ||| |||||||||||||| ||||||||||||         |||| |||||||||||     
T  25610226 cacttaatttttttgtatttcgtttcatgtttggaagctcttctgattctgattttttaataaagcttagctac-aaaaaaaattgcatttttattttat 25610324  T
Q  200 tggtgtctattttaaaaagagattcgagcctcctattt 237  Q
    ||| |||||||||||| ||||| |||| |||| |||||    
T  25610325 tggggtctattttaaatagagagtcgaacctcttattt 25610362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 63 - 173
Target Start/End: Complemental strand, 3799702 - 3799594
Alignment:
Q  63 tccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatga 162  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||  ||||||| ||||||||||||||||||||| ||| |||||||||| |||||    
T  3799702 tccaaacgacaccgttaggtaaatttcacctctctttcacttaatttt--tttatttcgtttcatgtttagaagttcttctgattctgatttttaaatga 3799605  T
Q  163 agcttagctac 173  Q
    || ||||||||    
T  3799604 agtttagctac 3799594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 7366748 - 7366867
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||| |||||||||| ||||||||||||| ||||||| |||||  | ||||| ||||||||||||||||||| |||| |||||||||| |||||||||||    
T  7366748 caattatttctttttcgcataaaccattcattttcccctttcctgcgacgtaggagtgacattccaaacgacaccgtaaggtaaatttcacctctctttc 7366847  T
Q  101 acttaattttattttatttt 120  Q
    ||||||||||||||| ||||    
T  7366848 acttaattttattttgtttt 7366867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 32956836 - 32956998
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||| |||||||||| ||||||||||||||||||||| |||||||||||| ||||||||| | |||||||||| | ||||||||||||| |||| |||||    
T  32956836 caatgatttctttttcgcataaaccattcgttttcccctttcccacaacggatgagtgacaaatccaaacgacactgttaggtaaatttcacctatcttt 32956935  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagct 171  Q
    |||         |||| ||| ||||||||||||||||||||| ||  | |||||||||||||||||||||||    
T  32956936 cac---------ttttttttggtttcatgtttagaagttcttttggttttgattttttaatgaagcttagct 32956998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 42312073 - 42312243
Alignment:
Q  4 tcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcac 102  Q
    |||||| ||||| || ||||  |||||||||||| ||||| |||||| ||||| ||||  || ||||||| |||||| |||||||| |||||||||||||    
T  42312073 tcatttatttttcgcttaaataattcgttttcccctttcc-acaacggatgagcgacaaatctaaacgacaccgttaagtaaatttcacctctctttcac 42312171  T
Q  103 ttaattttatttt-attttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    |||||||| |||| |||| ||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||    
T  42312172 ttaattttttttttatttcgtttcatgtttagaagttcttctgattctaattttttaatgaagcttaactac 42312243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 215
Target Start/End: Complemental strand, 41852300 - 41852090
Alignment:
Q  4 tcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcac 102  Q
    ||||||||||||||||||||  |||| ||||||| ||| |||||||| | ||||||||  | |||||||| ||||||| ||||||| || ||||||||||    
T  41852300 tcatttcttttttgcataaataattcattttccccttttccacaacggaggagtgacaaattcaaacgacaccgttagataaatttcacatctctttcac 41852201  T
Q  103 ttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttattttactgg 202  Q
    |||||||  |||||||| |||| | ||||| |||||||| ||| |||||||| |||||||| |||||||||         || |||||||||||||| ||    
T  41852200 ttaattt--ttttatttcgtttgacgtttaaaagttcttctgattctgatttcttaatgaaacttagctacacaaatcaattacgtttttattttaccgg 41852103  T
Q  203 tgtctattttaaa 215  Q
     ||||||||||||    
T  41852102 ggtctattttaaa 41852090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 40841245 - 40841073
Alignment:
Q  4 tcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcac 102  Q
    |||||||||||| ||||||||||||||||||||| ||||| |||||| |  |||||||  |||||||||  || ||||| |||||| |||| |||||||     
T  40841245 tcatttctttttcgcataaaccattcgttttcccctttcctacaacggagaagtgacaaatccaaacgagaccattaggaaaatttcacctatctttcaa 40841146  T
Q  103 ttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatt--ttttaatgaagcttagctac 173  Q
    ||| |||| |||||||| ||||||||||||||||||||| | | |||||||  ||||||| ||||||||||||    
T  40841145 ttattttttttttatttcgtttcatgtttagaagttcttctaattctgattttttttaataaagcttagctac 40841073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 3 - 173
Target Start/End: Original strand, 30739186 - 30739358
Alignment:
Q  3 atcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttca 101  Q
    |||||||| |||| |||||||| ||| |||||||| |||  |||||||   ||||||||  |||||| ||| ||||| ||||||||| ||||||||||||    
T  30739186 atcatttccttttcgcataaacaattagttttcccctttttcacaacggcggagtgacaaatccaaatgacaccgtttggtaaatttcacctctctttca 30739285  T
Q  102 ctta-attttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    |||  ||||||||||||||  |||||||| ||||||||||| ||| |||||||||||||||||| ||||||||    
T  30739286 cttttattttattttatttcatttcatgtatagaagttcttctgattctgattttttaatgaagtttagctac 30739358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 28590146 - 28589976
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||| |||||||||| || ||| |||||||||||||| |||||||||||| | ||||||||  ||||||||||   |||||||||| || |||||||||     
T  28590146 caattatttctttttcgcgtaa-ccattcgttttcccctttcccacaacggaggagtgacaaatccaaacgacattgttaggtaaaattcacctctcttc 28590048  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    |||||||||||  | |||||  |||||||||||||| ||||| ||| |||||||||||||||||| ||||||||    
T  28590047 cacttaatttt--tctatttcatttcatgtttagaaattcttctgattctgattttttaatgaagtttagctac 28589976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 40001694 - 40001474
Alignment:
Q  21 aaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttattt 119  Q
    |||||||||||||| || |||||||||||| || |||||||  | |||||||||||||||| ||||||  ||||||||||||||||||||| || |||||    
T  40001694 aaaccattcgtttttccctttcccacaacggataagtgacaaattcaaacgacgccgttag-taaattccacctctctttcacttaatttttttgtattt 40001596  T
Q  120 tgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttattttactgg-tgtctattttaaaaag 218  Q
     |||||||||||||||| |||| | | |||  |||| |||| ||||||| ||||         |||| ||||||||||| |||    |||||||||| ||    
T  40001595 cgtttcatgtttagaagctcttctaattctatttttctaataaagcttaactacacaaaaaaattgcatttttattttattggaaacctattttaaatag 40001496  T
Q  219 agattcgagcctcctatttcat 240  Q
    ||| |||| |||||||||||||    
T  40001495 agagtcgaacctcctatttcat 40001474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 41908239 - 41908407
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    ||||||||||||||| |||||||| | |||| ||| | |||  ||| ||| | ||||||||  |||||||||   |||||| ||||||| |||||| |||    
T  41908239 caatcatttctttttcgcataaac-actcgtattctcctttttcactacggaggagtgacagatccaaacgatatcgttagataaatttcacctcttttt 41908337  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctga-ttttttaatgaagcttag 169  Q
    ||||||||||| ||||||||||||||||||||||||||| || ||| ||||| ||||||||||||||||||    
T  41908338 cacttaatttt-ttttattttgtttcatgtttagaagtttttctgattctgatttttttaatgaagcttag 41908407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 12251291 - 12251135
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| || ||| |||||||  | ||||||||  |||||||| | ||||||| ||||||| ||||||  |    
T  12251291 caatcatttttttcttcgcataaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacgtcaccgttagataaatttcacctct--t 12251194  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||||| ||||| ||  |||||||||||||||||||| ||| |||||||||||    
T  12251193 tcacttaatttttttttaattcctttcatgtttagaagttcttctgattctgatttttt 12251135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 42161108 - 42160970
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||||||||||||||||| |||||| |||||||  | ||||||| | |||||||||| ||||||| ||||||| ||  ||||||||||||||||| ||||    
T  42161108 gcataaaccattcgttttacctttttccacaacagaggagtgacaaatccaaacgacaccgttagataaatttcac--ctctttcacttaatttt-tttt 42161012  T
Q  116 attttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    | ||  ||||||||||||||||| || ||| |||||||||||    
T  42161011 aattcctttcatgtttagaagttattctgattctgatttttt 42160970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 44876143 - 44875922
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaa-ttttattt 114  Q
    ||||||||||||||||||||||||  |||||| | | ||||||||  |||||||||| |  |||||||||||| | ||||||||||||||| |||| |||    
T  44876143 gcataaaccattcgttttcccttt--ccacaatgaaggagtgacaaatccaaacgacact-ttaggtaaatttcatctctctttcacttaattttttttt 44876047  T
Q  115 tattttgtttcatgtttagaagttcttgtgaatctga-ttttttaatgaagcttagctacnnnnnnnnnttgcgtttttattttact-ggtgtctatttt 212  Q
    |||||  ||||||||||||||||||||   | ||||| ||||||||||||| ||||||||          | | ||||||||||| | ||   |||||||    
T  44876046 tatttcatttcatgtttagaagttctt---attctgatttttttaatgaagtttagctacaaaaataaaatacatttttattttagtagggacctatttt 44875950  T
Q  213 aaaaagagattcgagcctcctatttcat 240  Q
    ||||||||| ||||||||||||||||||    
T  44875949 aaaaagagagtcgagcctcctatttcat 44875922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 240
Target Start/End: Complemental strand, 29731021 - 29730852
Alignment:
Q  65 caaacgacgccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaag 164  Q
    |||||||| | ||||||||||||| |||||||||||||| |||||| ||||     |||||||||||||||||| || ||| | |||||||||||||||     
T  29731021 caaacgacactgttaggtaaatttcacctctctttcact-aatttttttttc----gtttcatgtttagaagtttttctgattgtgattttttaatgaaa 29730927  T
Q  165 cttagctacnnnnnnnnnttgcgtttttattttactggtgtc-tattttaaaaagagattcgagcctcctatttcat 240  Q
    |||||||||         ||   ||||||||||||||| | | ||||||||||||||| ||||||||||||||||||    
T  29730926 cttagctacaaaaaaaaatta--tttttattttactgggggcctattttaaaaagagagtcgagcctcctatttcat 29730852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 240
Target Start/End: Original strand, 29741926 - 29742095
Alignment:
Q  65 caaacgacgccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaag 164  Q
    |||||||| | ||||||||||||| |||||||||| ||| |||||| ||||     |||||||||||||||||| || ||| | |||||||||||||||     
T  29741926 caaacgacactgttaggtaaatttcacctctcttttact-aatttttttttc----gtttcatgtttagaagtttttctgattgtgattttttaatgaaa 29742020  T
Q  165 cttagctacnnnnnnnnnttgcgtttttattttactggtgtc-tattttaaaaagagattcgagcctcctatttcat 240  Q
    |||||||||         |||  ||||||||||||||| | | ||||||||||||||| ||||||||||||||||||    
T  29742021 cttagctacaaaaaaaaattg--tttttattttactgggggcctattttaaaaagagagtcgagcctcctatttcat 29742095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 46221706 - 46221550
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| || ||| |||||||  | || |||||  |||||| ||   |||||| ||||||||||||||  |    
T  46221706 caatcatttttttattcgcataaaccattcgttttaccattttccacaacagaagaatgacaaatccaaatgatatcgttagataaattttacctct--t 46221609  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||||| ||||| ||| |||||||||||||||||||| | | |||||||||||    
T  46221608 tcacttaatttttttttaatttctttcatgtttagaagttcttctaattctgatttttt 46221550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 33910125 - 33910365
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| || ||| |||||||  | || | |||  |||||||||| ||||||| ||||||| ||||||  |    
T  33910125 caatcatttttttcttcgcataaaccattcgttttacccttttccacaacagaggaattacaaatccaaacgacaccgttagataaatttcacctct--t 33910222  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctga---ttttttaatgaagcttagctacnnnnnnnnnttgcgtttttatt 195  Q
    |||||||||||| ||||| ||  ||||||||||||||||| || | | |||||   ||||||||||||| ||||||||         || || |||||||    
T  33910223 tcacttaatttt-ttttaattcctttcatgtttagaagttattcttattctgatttttttttaatgaagtttagctacacaaaaatattacg-ttttatt 33910320  T
Q  196 ttact-ggtgtctattttaaaaagagattcgagcctcctatttca 239  Q
    ||||| || | ||||||||||||||||  ||||||||||||||||    
T  33910321 ttactaggggcctattttaaaaagagagccgagcctcctatttca 33910365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 33419103 - 33418964
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||||||||||||||||| || ||| | |||||  | ||||||||  |||||||||| ||||||| ||||||| ||||||  |||||||| |||| ||||    
T  33419103 gcataaaccattcgttttaccattttctacaacagaggagtgacaaatccaaacgacaccgttagataaatttcacctct--ttcacttatttttttttt 33419006  T
Q  116 attttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    | ||   ||||||||||||| ||||| ||| |||||||||||    
T  33419005 aattccattcatgtttagaacttcttctgattctgatttttt 33418964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 36796357 - 36796219
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||||||||||||||||| || ||| |||||||  | ||||||| | || ||||||| ||||||| ||||||| ||  ||||||||||||||||| ||||    
T  36796357 gcataaaccattcgttttacccttttccacaacagaggagtgacaaatcaaaacgacaccgttagataaatttcac--ctctttcacttaattttttttt 36796260  T
Q  116 attttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    | ||  |||| ||||||||| ||||| ||| |||||||||||    
T  36796259 aattcatttc-tgtttagaacttcttctgattctgatttttt 36796219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 44002825 - 44002764
Alignment:
Q  112 ttttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    ||||||||  |||||||||||||||||||| ||| | | |||||||||||||||||||||||    
T  44002825 ttttatttcatttcatgtttagaagttcttctgattataattttttaatgaagcttagctac 44002764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 26282463 - 26282391
Alignment:
Q  81 gtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatt 153  Q
    ||||||| |||||||||||||||||||||| || |||||  ||||||||||||||  |||| ||| |||||||    
T  26282463 gtaaattctacctctctttcacttaatttttttgtatttcatttcatgtttagaaactcttctgattctgatt 26282391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 21145491 - 21145555
Alignment:
Q  75 cgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttctt 141  Q
    |||||||||||||| ||||| ||||||||||||||  |||||||| ||||||||| || ||||||||    
T  21145491 cgttaggtaaatttcacctccctttcacttaattt--ttttatttcgtttcatgtataaaagttctt 21145555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 6380070 - 6379932
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||||||||||||||||| || ||| |||||||  | ||||||| | ||||||||||   ||| | ||||||| ||  ||||||||||||||||| ||||    
T  6380070 gcataaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacgacattgttggataaatttcac--ctctttcacttaatttt-tttt 6379974  T
Q  116 attttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    | ||  |||||| |||||||||||||  || |||||||||||    
T  6379973 aattcctttcatatttagaagttctttcgattctgatttttt 6379932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 7636310 - 7636153
Alignment:
Q  18 cataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt- 115  Q
    ||||| ||||||||||| || ||| |||||||  | ||||||||  | |||||||  ||||||| ||||||| |||| |  ||||||||||||| ||||     
T  7636310 cataagccattcgttttacccttttccacaacagaagagtgacaaattcaaacgataccgttagataaatttcaccttt--ttcacttaatttttttttt 7636213  T
Q  116 attttgtttcatgtttagaagttcttgtgaatctgatttttt--aatgaagcttagctac 173  Q
    | ||  ||||||||||||||||| || ||| |||||||||||  ||||||| ||||||||    
T  7636212 aattcctttcatgtttagaagttgttctgattctgatttttttcaatgaagtttagctac 7636153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 18015517 - 18015428
Alignment:
Q  65 caaacgacgccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||| ||||| | ||||||| ||||||  ||||||||||||| ||||| ||  |||||||||||||||||||| | | |||||||||||    
T  18015517 caaacgacaccgtttgataaatttcacctct--ttcacttaatttt-ttttaattcctttcatgtttagaagttcttctaattctgatttttt 18015428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 4100112 - 4100170
Alignment:
Q  94 ctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatt 153  Q
    ||||||||||||||||| ||||| ||  |||||||||||||||||||| ||| |||||||    
T  4100112 ctctttcacttaatttt-ttttaattcctttcatgtttagaagttcttctgattctgatt 4100170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 40737816 - 40737761
Alignment:
Q  185 gcgtttttattttactggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    |||||||||||||||| |  ||||||||||||| |||  |||||||||||||||||    
T  40737816 gcgtttttattttactcgaatctattttaaaaatagaaccgagcctcctatttcat 40737761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 18895400 - 18895334
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaa 67  Q
    |||| ||||| |||| |||||||| |||||||||||| || || || ||||| ||||||||||||||    
T  18895400 caattatttccttttcgcataaacaattcgttttccccttacctacgacgtaggagtgacattccaa 18895334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 28105789 - 28105847
Alignment:
Q  115 tattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    ||||| |||||||||||| ||||| || ||| ||| |||| ||||||||||||||||||    
T  28105789 tatttcgtttcatgtttaaaagtttttctgattctaatttcttaatgaagcttagctac 28105847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 44893825 - 44893791
Alignment:
Q  205 tctattttaaaaagagattcgagcctcctatttca 239  Q
    ||||||||||||||||| |||||||||||||||||    
T  44893825 tctattttaaaaagagagtcgagcctcctatttca 44893791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 6294315 - 6294489
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    ||||||||||||||| |||||||| |||||||||||| |||||||| ||||| ||||||||||||||||||| ||||||||||||||| |||||||||||    
T  6294315 caatcatttctttttcgcataaactattcgttttcccctttcccacgacgtaggagtgacattccaaacgacaccgttaggtaaatttcacctctctttc 6294414  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctga--ttttttaatgaagcttagctac 173  Q
    || |||||||||||||||||||||||||||||||||||||| ||| |||||  ||||||||||||||||||||||    
T  6294415 acataattttattttattttgtttcatgtttagaagttcttttgattctgattttttttaatgaagcttagctac 6294489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 30915354 - 30915192
Alignment:
Q  11 ttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttcacttaatttt 110  Q
    ||||| ||||||||||||| || |||| ||||  || |||||  ||||||||| |||||||| |||||| |||||||||| |||||||||||||||||||    
T  30915354 tttttcgcataaaccattcattatcccctttcttacgacgtagaagtgacatttcaaacgacaccgttatgtaaattttatctctctttcacttaatttt 30915255  T
Q  111 attttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    |||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||| ||||    
T  30915254 attttattttgtttcatgtttataagttcttctgattctgattttttaatgaagcttaactac 30915192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 1093044 - 1092804
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||||||||||||||  |||||||||||||||||||| ||||||| |||| || |||||||  |||||| ||| ||||||| |||||| ||| |||||||    
T  1093044 caatcatttctttttcacataaaccattcgttttcccctttcccaaaacggataagtgacaaatccaaatgacaccgttag-taaattctacatctcttt 1092946  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttattttac 199  Q
    ||||||||||| || ||||| |||||||||||||||| |||| ||| ||| |||||||||| ||||||||||||         ||||||||||||||||     
T  1092945 cacttaatttttttgtatttcgtttcatgtttagaagctcttttgattctaattttttaataaagcttagctacataaaaaaattgcgtttttattttat 1092846  T
Q  200 t-ggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    | |  | |||||||||| |||||  |||||||||||||||||    
T  1092845 tagaggcctattttaaatagagaaccgagcctcctatttcat 1092804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 29308470 - 29308230
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||||||||||||||  |||||| ||||||||||||| |||||||||| | || ||||| |  || ||| ||| ||||||| |||||| |||||||||||    
T  29308470 caatcatttctttttcacataaatcattcgttttcccctttcccacaatggataagtgataaatctaaatgacaccgttag-taaattctacctctcttt 29308372  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttattttac 199  Q
    ||||||||||| || ||||| |||||||||||||||| |||| ||| |||||||||||||| ||||||| ||||         ||||||||||||||||     
T  29308371 cacttaatttttttgtatttcgtttcatgtttagaagctcttatgattctgattttttaataaagcttaactacacaaaaaaattgcgtttttattttat 29308272  T
Q  200 t-ggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    | || | |||||||||| |||||  |||||||||||||||||    
T  29308271 tgggggcctattttaaatagagagccgagcctcctatttcat 29308230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 3748571 - 3748399
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||| |||||||| |  ||||||| |||||||||||| ||||   | ||||| ||||||||||||||| ||| ||||||||||||||| || ||||||||    
T  3748571 caattatttctttgtcacataaactattcgttttcccctttcatgcgacgtaggagtgacattccaaatgacaccgttaggtaaatttcacatctctttc 3748472  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    ||||||||||||||| |||| |||||| |||| |||||||| ||| | ||| |||||||||||||||||||||    
T  3748471 acttaattttattttgttttatttcatatttaaaagttcttctgattttgactttttaatgaagcttagctac 3748399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 21946168 - 21946317
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||| |||||||||| |||||||| |||||||||||  ||||| ||| |||| ||||||||||| ||||||| ||||||||||||||  |||||||||||    
T  21946168 caattatttctttttcgcataaacaattcgttttcctctttcctaca-cgtaagagtgacattc-aaacgacaccgttaggtaaattccacctctctttc 21946265  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatt 153  Q
    |||||| |||||||| ||||||||||| |||| ||||| || ||| |||||||    
T  21946266 acttaa-tttattttgttttgtttcatatttaaaagttattctgattctgatt 21946317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 173
Target Start/End: Original strand, 11088706 - 11088804
Alignment:
Q  76 gttaggtaaattttacctctctttcacttaatt-ttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    ||||||||||||| ||||||||||||||||||| || |||||||| ||||||||||||||||||||| | | |||||||||||||||||| ||||||||    
T  11088706 gttaggtaaatttcacctctctttcacttaattctttttttatttcgtttcatgtttagaagttcttctaattctgattttttaatgaagtttagctac 11088804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 350476 - 350651
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctct--ct 97  Q
    ||||||||||||||| |||||||| ||| |||| ||||||||||| |||| | || ||| |  || ||||||| |||| |||||||||| |||| |  ||    
T  350476 caatcatttctttttcgcataaacaatttgttt-cccttttcccataacggaggaatgataaatcaaaacgacaccgtcaggtaaatttcacctatatct 350574  T
Q  98 ttcacttaattttattttattttgtttcatgtttagaagttc-ttgtgaatctgattttttaatgaagcttagctac 173  Q
    |||| |||||||| |||||||| ||||||||||||||||||| || | | ||| |||||||||||||| ||||||||    
T  350575 ttcatttaatttttttttatttcgtttcatgtttagaagttctttctaattctaattttttaatgaagtttagctac 350651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 3514853 - 3514698
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| || ||| |||||||  | |||||| |  |||||||||| || |||| ||||||| ||||||  |    
T  3514853 caatcatttttttcttcgcataaaccattcgttttacccttttccacaacagaggagtgaaaaatccaaacgacaccattagataaatttcacctct--t 3514756  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||||| ||||| ||  ||||||||||| |||||||| ||| |||||||||||    
T  3514755 tcacttaatttt-ttttaattcctttcatgtttaaaagttcttctgattctgatttttt 3514698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 31861067 - 31861186
Alignment:
Q  21 aaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttattt 119  Q
    |||||||||||||| || |||||||||||| || |||||| | | ||||| ||| ||||| ||||||| || ||||||||||||||||||| || |||||    
T  31861067 aaaccattcgtttttccctttcccacaacggataagtgacaaattcaaacaacgtcgtta-gtaaattctatctctctttcacttaatttt-ttgtattt 31861164  T
Q  120 tgtttcatgtttagaagttctt 141  Q
     |||| ||||||||||| ||||    
T  31861165 cgttttatgtttagaagctctt 31861186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 6360839 - 6360975
Alignment:
Q  19 ataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttat 117  Q
    |||||||||||||||| || ||| |||||||  | ||||||||  | |||||||| ||||||| ||||||| |  ||||||||||||| |||| |||||     
T  6360839 ataaaccattcgttttacccttttccacaacagaggagtgacaaattcaaacgacaccgttagataaatttca--tctctttcacttattttt-ttttaa 6360935  T
Q  118 tttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    ||  |||||||||||||||||||| ||| | |||||||||    
T  6360936 ttcctttcatgtttagaagttcttttgattttgatttttt 6360975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 2618433 - 2618570
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||||||||||||||||| || ||| |||||||  | ||||||| | |||||||||| ||||| | ||||||| ||  ||||||||||||||||  ||||    
T  2618433 gcataaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacgacaccgttggataaatttcac--ctctttcacttaattt--tttt 2618528  T
Q  116 attttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    | ||  ||||||||||| |||||||| | | |||||||||||    
T  2618529 aattgctttcatgtttaaaagttcttcttattctgatttttt 2618570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 57749 - 57917
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| || ||| ||||||   | ||||||| | |||||||||| ||||||| ||||||| ||  |||||    
T  57749 caatcatttttttcttcgcataaaccattcgttttacccttttccacaatagaggagtgacaaatccaaacgacaccgttagataaatttcac--ctctt 57846  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    |||||||||||  ||||| ||  |||||| ||||||||||||| |||   |  ||||||||||||| ||||||||    
T  57847 tcacttaattt--ttttaattcctttcatatttagaagttcttttgatatt--ttttttaatgaagtttagctac 57917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 240
Target Start/End: Complemental strand, 1690624 - 1690480
Alignment:
Q  97 tttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttattt 196  Q
    ||||||||||| || || ||||| |||||||||||||||| | || ||| ||||||||||| || ||| ||||||||         |||| |||||||||    
T  1690624 tttcacttaatatttttgtatttcgtttcatgtttagaagcttttctgattctgatttttttataaagtttagctacacaaaaaaattgcatttttattt 1690525  T
Q  197 tactgg-tgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    || |||  | |||||||||| |||||  |||||||||||||||||    
T  1690524 tattggaggcctattttaaatagagagccgagcctcctatttcat 1690480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 19231673 - 19231854
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    ||||||||||||||| | |||||| |||| |||||  ||||||||||| | |  ||||| |  ||||||| |  |  |||||||||||| ||||||||||    
T  19231673 caatcatttctttttcgtataaactattctttttcaattttcccacaatggagaagtgataaatccaaacaatactcttaggtaaatttcacctctcttt 19231772  T
Q  100 cacttaattttattt---------tattttgtttcatgtttagaag---ttcttgtgaatctgattttttaatgaagcttag 169  Q
    ||||||||||| |||         |||| |||||||||||||||||   ||||| ||| ||| |||||||||||||||||||    
T  19231773 cacttaattttttttttttttttatattctgtttcatgtttagaagttcttcttctgattcttattttttaatgaagcttag 19231854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 22503993 - 22504045
Alignment:
Q  189 ttttattttactg-gtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    ||||||||||||| | ||||||||||||||||||  |||||||||||||||||    
T  22503993 ttttattttactgagggtctattttaaaaagagaaccgagcctcctatttcat 22504045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 11088608 - 11088647
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttt 40  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  11088608 caatcatttcttttttgcataaaccatttgtttccccttt 11088647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 29401388 - 29401439
Alignment:
Q  189 ttttattttact-ggtgtctattttaaaaagagattcgagcctcctatttca 239  Q
    |||||||||||| || | |||||||||||||||| |||||||||||||||||    
T  29401388 ttttattttactaggggcctattttaaaaagagagtcgagcctcctatttca 29401439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 12614646 - 12614582
Alignment:
Q  74 ccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttctt 141  Q
    ||||||| ||||||| ||||||  ||||||||||||| ||||| ||  ||||||||||||||||||||    
T  12614646 ccgttagataaatttcacctct--ttcacttaatttt-ttttaattcctttcatgtttagaagttctt 12614582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 29149464 - 29149560
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctct 95  Q
    ||||||||| ||| || |||||||||||||||||| || ||| |||||||  | ||||||| | |||||||||  |||||| |||||||| ||||||    
T  29149464 caatcatttttttcttcgcataaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacgataccgttacgtaaatttcacctct 29149560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 3 - 237
Target Start/End: Complemental strand, 44836726 - 44836492
Alignment:
Q  3 atcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttcac 102  Q
    ||||||||||||| |||||||||||||||||| || |||||||| ||||| ||||||||||||||| ||| ||| ||||||||||| || ||||||||||    
T  44836726 atcatttctttttcgcataaaccattcgtttttccctttcccacgacgtaggagtgacattccaaatgacaccgctaggtaaatttcacatctctttcac 44836627  T
Q  103 ttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac-nnnnnnnnnttgcgtttttattttactg 201  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||| |||||||||| || |||||||||          ||||||||||||||||||     
T  44836626 ttaattttattttattttgtttcatgtttaaaagttcttatgattctaattttttaat-aaacttagctacacagaaaaaattgcgtttttattttactt 44836528  T
Q  202 gtgtctattttaaaaagagattcgagcctcctattt 237  Q
      || ||||||||||||||| |||| ||||||||||    
T  44836527 aggtttattttaaaaagagagtcgaacctcctattt 44836492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 13120869 - 13120708
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||| |||||||||| ||||||||||||| ||||||| ||||| || ||||| ||||||||||||||||||| ||||||||||||||| |||||||| ||    
T  13120869 caattatttctttttcgcataaaccattcattttcccctttcctacgacgtaggagtgacattccaaacgacaccgttaggtaaatttcacctctctatc 13120770  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatga 162  Q
    ||||||||||||||| ||||||||| |||||| |||||||| ||| ||||||||||||||||    
T  13120769 acttaattttattttgttttgtttcgtgtttaaaagttcttctgattctgattttttaatga 13120708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 17674357 - 17674117
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||| |||||||||| |||||||||||| |||||||| ||||| || ||||| ||||||||||||||| ||| ||||||||||||||| |||| | ||||    
T  17674357 caattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaagagtgacattccaaatgacaccgttaggtaaatttcacctatttttc 17674258  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac-nnnnnnnnnttgcgtttttattttac 199  Q
    ||||||||||||||| ||||||||| |||||| |||||||| ||||| ||| |||||||||||| ||| ||||          ||| ||||| |||||||    
T  17674257 acttaattttattttgttttgtttcgtgtttaaaagttcttctgaatatgactttttaatgaagtttaactacacaaaaagaattgtgttttgattttac 17674158  T
Q  200 tggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    ||| | |||||||||||| ||| |||| |||| ||||||||    
T  17674157 tggagcctattttaaaaatagagtcgaacctcttatttcat 17674117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 50371195 - 50371367
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    ||||||||||||||| ||||||| |||| ||||| || || ||||||||| | ||||||||  ||||||| ||  |||||||||||||| ||||||||||    
T  50371195 caatcatttctttttcgcataaatcattagtttttcccttacccacaacggaggagtgacaaatccaaacaacatcgttaggtaaatttcacctctcttt 50371294  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    ||||||||||| |||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  50371295 cacttaatttt-ttttatttcgtttcatgtttagaagttcttatgattctgattttttaatgaagcttagctac 50371367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 37873765 - 37873519
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaa-----cgtatgagtgacattccaaacgacgccgttaggtaaattttacctct 95  Q
    |||| ||||||||| |||||||||||||||||||||| ||||| || |     |||| ||||||||| ||||||||| | |||| |||||||| ||||||    
T  37873765 caattatttcttttctgcataaaccattcgttttcccctttcctacgatacgacgtaggagtgacatgccaaacgacactgttacgtaaatttcacctct 37873666  T
Q  96 ctttcacttaatttt-attttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac-nnnnnnnnnttgcgttttta 193  Q
    ||||||||||||||| |||||| ||||||||||||||| |||||||| ||| ||| |||||||||||||||||| ||||          || | ||||||    
T  37873665 ctttcacttaatttttattttagtttgtttcatgtttaaaagttcttatgattctaattttttaatgaagcttaactacacacaaaaaattacattttta 37873566  T
Q  194 ttttactggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    ||||||||| | |||||||||||| ||| ||||||||||||||||||    
T  37873565 ttttactggggcctattttaaaaatagaatcgagcctcctatttcat 37873519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 26486376 - 26486206
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||| |||||||||| |||||||| |||||||||||  ||||| || |||||  |||||||||||||| ||| ||||| ||||||||| ||||||  |||    
T  26486376 caattatttctttttcgcataaactattcgttttcctctttcctacgacgtagaagtgacattccaaatgacaccgtttggtaaatttcacctct--ttc 26486279  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    | |||||||||||||||||||||||||||||| |||||||| ||| |||||||||| ||||||||||||||||    
T  26486278 aattaattttattttattttgtttcatgtttaaaagttcttctgattctgatttttaaatgaagcttagctac 26486206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 22386829 - 22386667
Alignment:
Q  11 ttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttcacttaatttt 110  Q
    |||||||||||||||||| |||||||| ||||| || ||||| |||||||||||||||||||  |||||  ||||||| || ||||||||||||||||||    
T  22386829 ttttttgcataaaccatttgttttcccctttcctacgacgtaggagtgacattccaaacgacatcgttaaataaatttcacatctctttcacttaatttt 22386730  T
Q  111 attttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    ||||||||||||||| |||||| ||  |||| ||| ||||||||||||||||| |||| ||||    
T  22386729 attttattttgtttcgtgtttaaaaaatcttatgattctgattttttaatgaaacttaactac 22386667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 15441358 - 15441516
Alignment:
Q  8 ttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaa 106  Q
    |||||||||||||||| ||||| ||||||||||||| |||||  | ||||||||  |||||||||||||||||||||||||| ||||||||||||||||     
T  15441358 ttcttttttgcataaatcattcattttcccttttcc-acaacagaagagtgacaaatccaaacgacgccgttaggtaaatttcacctctctttcactta- 15441455  T
Q  107 ttttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagctta 168  Q
     ||| |||||||  ||||||||||||||||||||| ||| | ||||||||||||||||||||    
T  15441456 -ttttttttattccgtttcatgtttagaagttcttctgattttgattttttaatgaagctta 15441516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 24556867 - 24557035
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||| |||||||||| |||||||||||||||||| | |||||| |  ||||| ||||||||||||||||||| ||||||||||||||| ||  |||||||    
T  24556867 caattatttctttttcgcataaaccattcgtttttctttttcctatcacgtaggagtgacattccaaacgacaccgttaggtaaatttcac--ctctttc 24556964  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    ||||||||||||||| |||||||   |||||| |||||||| ||| ||| |||||| ||||||||||||||||    
T  24556965 acttaattttattttgttttgtt--gtgtttaaaagttcttctgattctaatttttcaatgaagcttagctac 24557035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 42740171 - 42740406
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||| |||||||||| |||||||| |||||||||||| ||||| || ||||| ||||||||||||||| ||  | ||||||||||  | |||| ||||||    
T  42740171 caattatttctttttcgcataaacaattcgttttcccctttcctacgacgtaggagtgacattccaaatgaaactgttaggtaaa--tcacctatctttc 42740268  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac-nnnnnnnnnttgcgtttttattttac 199  Q
    ||||||||||||||| |||||||||||||||| |||||||| |   |||||||||||||||||| ||| | ||          || ||||||||||||||    
T  42740269 acttaattttattttgttttgtttcatgtttaaaagttcttct---tctgattttttaatgaagtttaaccacacaaaaaaaattacgtttttattttac 42740365  T
Q  200 tggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    ||| | |||||||||||| |||  |||||||||||||||||    
T  42740366 tggggcctattttaaaaatagaaccgagcctcctatttcat 42740406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 27703532 - 27703365
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||||||||| |||| |||||||||||||||||| || ||| |||| ||| | |||||||| |||||||||| | ||||||||||||| ||||||| |||    
T  27703532 caatcatttcattttcgcataaaccattcgtttttcccttttccaccacggaagagtgacaatccaaacgacactgttaggtaaatttcacctctccttc 27703433  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    ||||||||||||||      |||||||||||||||||| || ||| |||||||||||||  ||||||| ||||    
T  27703432 acttaattttatttc-----gtttcatgtttagaagttattatgattctgattttttaacaaagcttaactac 27703365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 12971467 - 12971704
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||||||||||||||  |||||||||||||||||||| |||||||||||| || |||||| | |||||||||| |||||| ||||||| ||||| |||||    
T  12971467 caatcatttctttttcacataaaccattcgttttcccctttcccacaacggataagtgacaaatccaaacgactccgtta-gtaaattctacctatcttt 12971565  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttattttac 199  Q
    |||||| |||| || ||||| |||||||||| ||||| |    ||| |||||||||||||| ||| |||||||          ||||||||||||||||     
T  12971566 cacttattttttttgtatttcgtttcatgttaagaagctaaactgattctgattttttaataaagtttagctatacaaaaaaattgcgtttttattttat 12971665  T
Q  200 t-ggtgtctattttaaaaagagattcgagcctcctattt 237  Q
    | || || ||||||||| |||||  ||||||||||||||    
T  12971666 taggggtttattttaaatagagagccgagcctcctattt 12971704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 173
Target Start/End: Original strand, 9777537 - 9777648
Alignment:
Q  63 tccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt-attttgtttcatgtttagaagttcttgtgaatctgattttttaatg 161  Q
    |||||||||| ||||||||||||||| || |||||||||||||||||| |||| |||| |||||||||||||||||| || | | |||||||||||||||    
T  9777537 tccaaacgacaccgttaggtaaatttcacttctctttcacttaattttttttttatttagtttcatgtttagaagttattctaattctgattttttaatg 9777636  T
Q  162 aagcttagctac 173  Q
    ||| ||||||||    
T  9777637 aagtttagctac 9777648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 28885674 - 28885433
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || ||||||||||||||||||  ||||| |||||||  ||||||||| | |||||||||| ||||||| ||||||| ||  |||||    
T  28885674 caatcatttttttcttcgcataaaccattcgttttatctttttccacaacagatgagtgacaaatccaaacgacaccgttagataaatttcac--ctctt 28885577  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctga---ttttttaatgaagcttagctacnnnnnnnnnttgcgtttttatt 195  Q
    |||||||||||| ||||| ||  |||||||||||||||||||| | | |||||   ||||||||||||  ||| ||||         || || |||||||    
T  28885576 tcacttaatttt-ttttaattcctttcatgtttagaagttcttctaattctgatttttttttaatgaaatttaactacacaaaaaaattacg-ttttatt 28885479  T
Q  196 ttact-ggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||||||    
T  28885478 ttactaggtatctattttaaaaagagagtcgagcctcctatttcat 28885433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 25930665 - 25930902
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    ||||||||| || |||| |||||||||| ||||| || ||| |||||||  ||||||||||  |||||||||| ||||||| ||||||| |  |||||||    
T  25930665 caatcattttttctttggataaaccatttgttttacccttttccacaacagatgagtgacaaatccaaacgacaccgttagataaatttca--tctcttt 25930762  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctga--ttttttaatgaagcttagctacnnnnnnnnnttgcgtttttatttt 197  Q
    ||||||||||| ||| ||| | |||||| |||||||| |||| ||| |||||  ||||||||||||| ||||||||         || ||||||||||||    
T  25930763 cacttaattttttttaattct-tttcatatttagaagctcttctgattctgattttttttaatgaagtttagctacacaaaaaaattacgtttttatttt 25930861  T
Q  198 act-ggtgtctattttaaaaagagattcgagcctcctattt 237  Q
    | | || | ||||||| |||||||| |||||| ||||||||    
T  25930862 attaggggcctattttcaaaagagagtcgagcttcctattt 25930902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 18127923 - 18127785
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||||||| ||||||||| || ||| |||||||  | ||||||||  |||||||||| ||||||||||||||||||  ||||||||||||||||| ||||    
T  18127923 gcataaactattcgttttacccttttccacaacaaaggagtgacaaatccaaacgacaccgttaggtaaattttac--ctctttcacttaatttt-tttt 18127827  T
Q  116 attttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    | ||| ||| |||||||||||||||| ||| |||| ||||||    
T  18127826 aatttctttaatgtttagaagttcttatgattctgttttttt 18127785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 50552575 - 50552711
Alignment:
Q  19 ataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttat 117  Q
    ||||||||||| |||| |||||| ||||||| || ||||||||  |||||||||| || |||| ||||||| |  |||||||||||||||||| |||||     
T  50552575 ataaaccattcattttacctttttccacaacataggagtgacaaatccaaacgacaccattagataaatttca--tctctttcacttaatttt-ttttaa 50552671  T
Q  118 tttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    ||  |||||||||||||||||||| ||| |||||||||||    
T  50552672 ttcctttcatgtttagaagttcttttgattctgatttttt 50552711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 68 - 310
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| || ||| | |||||  | ||||||||  |||||||||| ||||||| ||||||| ||||||  |    
T  68 caatcatttttttcttcgcataaaccattcgttttacccttttctacaacagaggagtgacaaatccaaacgacaccgttagataaatttcacctct--t 165  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctga----ttttttaatgaagcttagctacnnnnnnnnnttgcgtttttat 194  Q
    |||||||||||| ||||| ||  |||||||||| ||||||||| ||| | |||    ||||||||||||| ||||||||         || || ||||||    
T  166 tcacttaatttttttttaattcctttcatgtttggaagttcttttgattttgattttttttttaatgaagtttagctacacaaaaaaattacg-ttttat 264  T
Q  195 tttact-ggtgtctattttaaaaagagattcgagcctcctatttca 239  Q
    |||||| || | ||||||||||||||||  ||||||||||||||||    
T  265 tttactgggagcctattttaaaaagagaaccgagcctcctatttca 310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 30004910 - 30004737
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    ||||||||| || ||  ||||||||||||||||| |||||| |||||||  | ||||||||  | |||||||  ||||||| ||||||| |||| |  ||    
T  30004910 caatcatttgttcttcccataaaccattcgttttacctttttccacaacagaggagtgacaaattcaaacgataccgttagataaatttcaccttt--tt 30004813  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattt--tttaatgaagcttagctac 173  Q
    ||||||||||| ||||| ||  |||||||||||||||||||| ||| ||||||||  || ||||||| ||||||||    
T  30004812 cacttaatttttttttaattcctttcatgtttagaagttcttctgattctgatttaattcaatgaagtttagctac 30004737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 5560561 - 5560713
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttat-tt 114  Q
    |||||||| |||| ||||| |||||||||||||| | ||||||||  ||||||  || |||| | |||||||| |  ||||||||||||| |||| | ||    
T  5560561 gcataaactattcattttctcttttcccacaacggaggagtgacaaatccaaataacaccgt-acgtaaatttca--tctctttcacttatttttttatt 5560657  T
Q  115 tattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagc 170  Q
    ||||||||||||||||||||||||||| ||| || ||| ||||||||||| |||||    
T  5560658 tattttgtttcatgtttagaagttcttttgattcagatcttttaatgaagtttagc 5560713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 48722373 - 48722214
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| || ||| |||||||  | ||||||||  |||||||||| ||||||| ||||||| |||||| ||    
T  48722373 caatcatttttttcttcgcataaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacgacaccgttagataaatttcacctctttt 48722274  T
Q  99 tcacttaat---tttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
      |||||||   ||| ||||| ||| |||||||||||||||||||| ||| |||||||||||    
T  48722273 --acttaatattttttttttaatttctttcatgtttagaagttcttctgattctgatttttt 48722214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 30899736 - 30899876
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||||||||||||||||| || ||| |||||||  | || |||||  |||||||||| ||||||| ||||||| ||||||  ||||||||||||| ||||    
T  30899736 gcataaaccattcgttttacccttttccacaacagaggaatgacaaatccaaacgacaccgttagataaatttcacctct--ttcacttaattttttttt 30899833  T
Q  116 -attttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
     | ||  |||||||||||||||||||| ||| |||||||||||    
T  30899834 taattcctttcatgtttagaagttcttctgattctgatttttt 30899876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 160
Target Start/End: Original strand, 1269634 - 1269772
Alignment:
Q  25 cattcgttttcccttttcccacaa-cgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaatt-ttattttattttg 121  Q
    ||||||||||| | |||||||||| || | ||||||||  |||||||||| |||||  |||||||| |||| ||||||||||| |  || |||||||| |    
T  1269634 cattcgttttctcctttcccacaagcggaggagtgacaaatccaaacgacaccgttccgtaaatttcacctttctttcacttattaatttttttatttcg 1269733  T
Q  122 tttcatgtttagaagttcttgtgaatctgattttttaat 160  Q
    |||||||||||||||||||  ||| ||||||||||||||    
T  1269734 tttcatgtttagaagttctattgattctgattttttaat 1269772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 6333519 - 6333396
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtg-acattccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    ||||||||| ||||  |||||||||||||| ||||||  ||||||||||| ||||||| | | |||||||||| | |||||||||||||  | |||||||    
T  6333519 caatcattttttttccgcataaaccattcgctttccc--ttcccacaacgaatgagtgaagaatccaaacgacactgttaggtaaattt--catctcttt 6333424  T
Q  100 cacttaattttattttattttgtttcatg 128  Q
    ||||||||||| |||||||| ||||||||    
T  6333423 cacttaatttt-ttttatttcgtttcatg 6333396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 14084686 - 14084547
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||||||||||||||||| || ||  |||||||  | ||||||||  |||||||||| || |||| ||||||| ||||||  |||| |||||||| ||||    
T  14084686 gcataaaccattcgttttacccttctccacaacagaggagtgacaaatccaaacgacaccattagataaatttcacctct--ttcatttaattttttttt 14084589  T
Q  116 attttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    | ||  |||||||||||||||||||| ||| |||||||||||    
T  14084588 aattcctttcatgtttagaagttcttctgattctgatttttt 14084547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 10109781 - 10109940
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||| ||||||||| || ||| |||||||  | ||||||||  |||||||||||||||||| ||||||| ||||||  |    
T  10109781 caatcatttttttcttcgcataaactattcgttttacccttttccacaacagaggagtgacaaatccaaacgacgccgttagataaatttcacctct--t 10109878  T
Q  99 tcacttaattttattttatt---ttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||||| |||| ||   |  |||||||||||||||||||| ||| ||||| |||||    
T  10109879 tcacttaattttttttttttaattcctttcatgtttagaagttcttctgattctgagttttt 10109940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 39080531 - 39080452
Alignment:
Q  93 tctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    |||||||| |||||| || ||||||||  |||||||||||||||||||| ||| |||||||||| ||||||||||||||||    
T  39080531 tctctttcgcttaatatt-ttttatttcatttcatgtttagaagttcttatgattctgatttttcaatgaagcttagctac 39080452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 17487286 - 17487042
Alignment:
Q  1 caatcatttcttt-tttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| |||||||||||||||||||||  | ||| |||||||  | ||||||||  ||||||| |||||||||| ||||||| ||||||  |    
T  17487286 caatcatttttttctttgcataaaccattcgttttatccttttccacaacagaggagtgacaaatccaaacaacgccgttagataaatttcacctct--t 17487189  T
Q  99 tcacttaattttattttatt---ttgtttcatgtttagaagttcttgtgaatctga---ttttttaatgaagcttagctacnnnnnnnnnttgcgttttt 192  Q
    |||||||||||| |||| ||   |  |||||||||||||| ||||| ||| |||||   ||||| ||||||  ||||||||         || || ||||    
T  17487188 tcacttaattttttttttttaattcctttcatgtttagaacttcttctgattctgagtttttttcaatgaaatttagctacacaaaaaaattacg-tttt 17487090  T
Q  193 attttact-ggtgtctattttaaaaagagattcgagcctcctatttca 239  Q
    ||||||||  | | |||||||||||||||| |||||||||||||||||    
T  17487089 attttactaagggcctattttaaaaagagagtcgagcctcctatttca 17487042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 6150800 - 6150922
Alignment:
Q  18 cataaaccattcgtttt-cccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    ||||||||||||||||| || |||| |||||||  | ||||||| | |||||||||| ||||||| ||||||| ||  || |||||||||||||| ||||    
T  6150800 cataaaccattcgttttaccttttttccacaacagaggagtgacaaatccaaacgacaccgttagataaatttcac--ctatttcacttaatttt-tttt 6150896  T
Q  116 attttgtttcatgtttagaagttctt 141  Q
    | ||  ||||||||||||||||||||    
T  6150897 aattcctttcatgtttagaagttctt 6150922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 31369406 - 31369302
Alignment:
Q  2 aatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttca 101  Q
    |||||||||||||||||||||||||||| |||| |||| |||||||||| | |  |||     ||||| || || |||| ||||||| ||||||||||||    
T  31369406 aatcatttcttttttgcataaaccattcatttttccttatcccacaacggagggatga-----caaacaacaccattagataaatttcacctctctttca 31369312  T
Q  102 cttaatttta 111  Q
    ||| ||||||    
T  31369311 ctttatttta 31369302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 52055630 - 52055786
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||||||||||||||||| || |||  ||||| | | ||||||||  || ||||||| ||||||| ||||||||||||||  |||||||| || | ||||    
T  52055630 gcataaaccattcgttttacccttttacacaaag-aggagtgacaaatctaaacgacaccgttagataaattttacctct--ttcacttatttatttttt 52055726  T
Q  116 attttgtttcatgtttagaagttcttgtgaatctga--ttttttaatgaagcttagctac 173  Q
    | ||  ||||||| ||||||||| || ||| |||||  ||||||||||||| ||||||||    
T  52055727 aattcctttcatgcttagaagtttttctgattctgattttttttaatgaagtttagctac 52055786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 20905271 - 20905115
Alignment:
Q  19 ataaaccattcgtttt-cccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttta 116  Q
    |||||||||||||||| ||||||| |||||||  | ||||||||  |||||||||| ||||| | ||||||| ||| ||  ||||||||| ||| |||||    
T  20905271 ataaaccattcgttttaccctttttccacaacagaggagtgacaaatccaaacgacaccgttggataaatttcaccact--ttcacttaagtttttttta 20905174  T
Q  117 ttttgtttcatgtttagaagttcttgtgaatctg--attttttaatgaagcttagctac 173  Q
     ||  |||||| ||||||||||||| | | ||||   ||||||||||||| ||||||||    
T  20905173 attcctttcatatttagaagttcttcttattctggttttttttaatgaagtttagctac 20905115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 173
Target Start/End: Complemental strand, 52240473 - 52240366
Alignment:
Q  65 caaacgacgccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatt--ttttaatga 162  Q
    |||||||| | ||||| ||||||| ||||||  ||||||||||||| ||||| ||  |||||| ||||||||||||| ||| |||||||  |||||||||    
T  52240473 caaacgacactgttagataaatttcacctct--ttcacttaatttt-ttttaattcctttcatatttagaagttcttctgattctgattttttttaatga 52240377  T
Q  163 agcttagctac 173  Q
    || ||||||||    
T  52240376 agtttagctac 52240366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 29208101 - 29207946
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| || ||| ||||||   | ||||||||  |||||| ||| ||||| | ||||||| |  ||||||    
T  29208101 caatcatttttttcttcgcataaaccattcgttttacccttttccacaatagaggagtgacaaatccaaatgacaccgttggataaatttca--tctctt 29208004  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    | |||||||||| ||| | | | |||||| ||||||||||||| ||| |||||||||||    
T  29208003 ttacttaatttt-tttaaatgtctttcatatttagaagttcttctgattctgatttttt 29207946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 33124551 - 33124489
Alignment:
Q  94 ctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    ||||||||||||||||| ||||| || |||||||||||| |||||||| ||| ||||| |||||    
T  33124551 ctctttcacttaatttt-ttttaattcgtttcatgtttaaaagttcttctgattctgaattttt 33124489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 51110087 - 51109949
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||||||||||| |||||  | ||| |||||||  | ||||||||  | |||| ||| ||||||| ||||||| ||||||  ||||||||||||| ||||    
T  51110087 gcataaaccatttgttttatccttttccacaacaaaggagtgacaaattcaaatgacaccgttagataaatttcacctct--ttcacttaatttt-tttt 51109991  T
Q  116 attttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    | ||  |||||||||||||| ||||| | | |||||||||||    
T  51109990 aattcctttcatgtttagaaattcttctaattctgatttttt 51109949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 20905082 - 20905049
Alignment:
Q  206 ctattttaaaaagagattcgagcctcctatttca 239  Q
    |||||||||||||||| |||||||||||||||||    
T  20905082 ctattttaaaaagagagtcgagcctcctatttca 20905049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 48722162 - 48722129
Alignment:
Q  206 ctattttaaaaagagattcgagcctcctatttca 239  Q
    |||||||||||||||| |||||||||||||||||    
T  48722162 ctattttaaaaagagagtcgagcctcctatttca 48722129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 6150991 - 6151023
Alignment:
Q  207 tattttaaaaagagattcgagcctcctatttca 239  Q
    ||||||||||||||| |||||||||||||||||    
T  6150991 tattttaaaaagagagtcgagcctcctatttca 6151023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 17325906 - 17326146
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||| |||||||||| |||||||||||||| |||||| ||||| || ||||| ||||||||||||||||||| ||||||||||||||| |||| ||||||    
T  17325906 caattatttctttttcgcataaaccattcgctttcccctttcctacgacgtaggagtgacattccaaacgacaccgttaggtaaatttcacctatctttc 17326005  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac-nnnnnnnnnttgcgtttttattttac 199  Q
    |||| |||||||||| ||||||||| |||||| |||||||| ||| |||||||||||||||||  ||||||||          ||||||||| |||||||    
T  17326006 actttattttattttgttttgtttcgtgtttaaaagttcttctgattctgattttttaatgaattttagctacacaaaaagaattgcgttttgattttac 17326105  T
Q  200 tggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    ||| | |||||||||||| |||  |||||||| ||||||||    
T  17326106 tggagcctattttaaaaatagaaccgagcctcatatttcat 17326146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 7390403 - 7390232
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||| |||||||||| ||||||||||||||||||||| |||||  | || ||  |||||||||| ||||||| ||||||| ||||||| |||||||||||    
T  7390403 caattatttctttttcgcataaaccattcgttttcccctttcctgcgacatagaagtgacattc-aaacgacaccgttagataaatttcacctctctttc 7390305  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    ||||||||||||||| |||||||| ||||||| |||||||| ||| || ||||||||||||||||||||||||    
T  7390304 acttaattttattttgttttgttttatgtttaaaagttcttctgattccgattttttaatgaagcttagctac 7390232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 6 - 159
Target Start/End: Original strand, 10033613 - 10033770
Alignment:
Q  6 atttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttcactta 105  Q
    |||||||||| |||||||||||||||||||||||| || || ||||| ||||||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  10033613 atttctttttcgcataaaccattcgttttcccttt-cctacgacgtaggagtgacattccaaacgaaaccgttaggtaaatttcacctctctttcactta 10033711  T
Q  106 attttatttta-----ttttgtttcatgtttagaagttcttgtgaatctgattttttaa 159  Q
    |||||||||||     |||||||||||||||| |||||||| ||| |||||||||||||    
T  10033712 attttattttattttgttttgtttcatgtttaaaagttcttctgattctgattttttaa 10033770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 33281736 - 33281974
Alignment:
Q  2 aatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||||||||||||| |||||||||||| | ||| ||||||||||||||| ||||||||| | | ||||||||  ||||| |||||||| |||||||||||    
T  33281736 aatcatttctttttcgcataaaccatttgcttttccttttcccacaacggatgagtgacaaattcaaacgacatcgttaagtaaatttcacctctctttc 33281835  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttattttact 200  Q
    |||| ||||| || ||||||||||||||||||||||||||| ||| | |||| ||||||||||| ||| ||||         ||||||||||||||||||    
T  33281836 actt-atttttttatattttgtttcatgtttagaagttcttttgattatgatcttttaatgaagtttaactacacaaaaagattgcgtttttattttact 33281934  T
Q  201 ggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    |    |||||||||||||||| || | |||| ||||||||    
T  33281935 gagacctattttaaaaagagagtcaaacctcatatttcat 33281974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 18873518 - 18873693
Alignment:
Q  1 caatcatttcttttttgcataaaccatt---cgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctct 97  Q
    |||| |||||||||| ||||||||||||   ||||||||| ||||| || ||||| ||||||||||||||||||  ||||||||||||||| |||| |||    
T  18873518 caattatttctttttcgcataaaccattattcgttttcccctttcctacgacgtaggagtgacattccaaacgaaaccgttaggtaaatttcacctttct 18873617  T
Q  98 ttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    ||||||||| |||||||| |||||||||||||||| ||||| || ||| ||| |||||||||||||| ||| ||||    
T  18873618 ttcacttaactttattttgttttgtttcatgtttaaaagtttttctgattctaattttttaatgaagtttaactac 18873693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 43511679 - 43511851
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||||||||||||||   |||||||||||||||| || |||||||||||| || |||||||  |||||||||| ||||||| |||||| |||||||||||    
T  43511679 caatcatttctttttcatataaaccattcgtttttccctttcccacaacggataagtgacaaatccaaacgacaccgttag-taaattctacctctcttt 43511777  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    ||||||||||| || ||||| |||||||||||||||| |||  ||| |||||||||||||| ||||||||||||    
T  43511778 cacttaatttttttgtatttcgtttcatgtttagaagctctgctgattctgattttttaataaagcttagctac 43511851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 3349732 - 3349492
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||||||||||||||  |||||||| ||||||||||| |||||||||||| || |||||||  ||||||  || ||||||| |||||| |||||||||||    
T  3349732 caatcatttctttttcacataaaccgttcgttttcccctttcccacaacggataagtgacaaatccaaatcacaccgttag-taaattatacctctcttt 3349634  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttattttac 199  Q
    |||| || ||| || ||||| |||||||||||||||  |||| ||| |||||||||||||| ||||||||||||         ||||||||||||||||     
T  3349633 cactcaagttttttgtatttagtttcatgtttagaaactcttctgattctgattttttaataaagcttagctacacaaaaaaattgcgtttttattttat 3349534  T
Q  200 tggtg-tctattttaaaaagagattcgagcctcctatttcat 240  Q
    ||| |  |||||||||| |||||  |||||||||||||||||    
T  3349533 tggagacctattttaaatagagagccgagcctcctatttcat 3349492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 17513939 - 17513703
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||||||||||||||  ||||||||||||||||| || |||||||||||| || |||||||  ||||||||| | |||| |||||||| |||||||||||    
T  17513939 caatcatttctttttcacataaaccattcgtttttccctttcccacaacggataagtgacaaatccaaacgaggtcgtt-ggtaaattctacctctcttt 17513841  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttattttac 199  Q
    ||||||||||| || ||||| |||||||||||||||| |||| ||| |||  ||||||||| ||||||| ||||         |||| |||||||||||     
T  17513840 cacttaatttttttgtatttcgtttcatgtttagaagctcttctgattctatttttttaataaagcttaactacacaaaataattgcatttttattttat 17513741  T
Q  200 t-ggtgtctattttaaaaagagattcgagcctcctatt 236  Q
    | || | ||||| |||| ||||| ||||||||||||||    
T  17513740 tgggggcctattataaatagagagtcgagcctcctatt 17513703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 173
Target Start/End: Original strand, 27351411 - 27351582
Alignment:
Q  2 aatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    ||||||||||||||||||||||||| || |||||   |||||||||||| | ||||||||  || ||||||| |  |||||||||||| |||||||||||    
T  27351411 aatcatttcttttttgcataaaccagtcattttcttctttcccacaacggaggagtgacaaatctaaacgacactattaggtaaatttcacctctctttc 27351510  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    |||||||||| ||||||||  |||||||||||||||||||| ||| ||  |||||||||||||| ||||||||    
T  27351511 acttaatttt-ttttatttcctttcatgtttagaagttcttctgattcgaattttttaatgaagtttagctac 27351582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 10591276 - 10591038
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtga-cattccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    ||||||||| |||||  || ||| |||||||| |||| |||||||||||| || ||| | || |||||||| | ||||||| |||||| |||||||||||    
T  10591276 caatcatttatttttcacaaaaatcattcgttatcccctttcccacaacggataagtaatcaatccaaacggcaccgttag-taaattctacctctcttt 10591178  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttattttac 199  Q
    ||||||||||| || ||||| |||||||||||||||  | || ||| |||||||||||||| ||||||| ||||         ||||||||||| ||||     
T  10591177 cacttaatttttttgtatttcgtttcatgtttagaaactattctgattctgattttttaataaagcttaactacacaaaaaaattgcgttttta-tttat 10591079  T
Q  200 tggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    ||| |||||||||||| |||||  |||||||||||||||||    
T  10591078 tggcgtctattttaaatagagagccgagcctcctatttcat 10591038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 29156251 - 29156423
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||||||||||||||   ||||||||||||||||||| |||||||||||| || |||||||  | |||||||  ||||||| |||||| |||||||||||    
T  29156251 caatcatttctttttcatataaaccattcgttttcccctttcccacaacggataagtgacaaattcaaacgataccgttag-taaattctacctctcttt 29156349  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    || |||||||| || |||||||||||||||||||||| |||  ||| | |||||||||||| ||| ||||||||    
T  29156350 caattaatttttttgtattttgtttcatgtttagaagctctactgattttgattttttaataaagtttagctac 29156423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 8379445 - 8379282
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||| |||||||||| |||||| |||||||||||||| || ||||||||| ||||||||||  |||||||||| |||||  |||||||| ||||||||||    
T  8379445 caataatttctttttcgcataatccattcgttttcccctt-cccacaacggatgagtgacaaatccaaacgacaccgttgcgtaaatttcacctctcttt 8379347  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagc 165  Q
    |||||||| || |||| ||| |||||||||||||||| |||| |||  || |||||||||||||||    
T  8379346 cacttaatatt-ttttttttcgtttcatgtttagaagatcttctgatacttattttttaatgaagc 8379282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 240
Target Start/End: Original strand, 16515619 - 16515806
Alignment:
Q  54 gagtgacattccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatt 153  Q
    ||||||||||||||| ||| || |||| ||||||| |||||| ||||||||||||||||||| |||||||||||||||  |||||||| | | ||||| |    
T  16515619 gagtgacattccaaatgacaccattagctaaatttcacctctttttcacttaattttattttgttttgtttcatgttttaaagttcttctcattctgact 16515718  T
Q  154 ttttaatgaagcttagctac-nnnnnnnnnttgcgtttttattttactggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    |||| |||||||||||||||           ||||||||||||||||| | | |||||||||||| |||  ||| |||||||||||||    
T  16515719 ttttcatgaagcttagctacacacaaaaaaatgcgtttttattttactcgggcctattttaaaaatagaaccgaacctcctatttcat 16515806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 4734585 - 4734444
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||||||||||||||  |||||||||||||||||||| ||||||||| || || |||||| | |||||| ||| |||||| ||||||| ||| |||||||    
T  4734585 caatcatttctttttcacataaaccattcgttttcccatttcccacagcggataagtgacaaatccaaatgacaccgtta-gtaaattctacatctcttt 4734487  T
Q  100 cacttaattttattt-tattttgtttcatgtttagaagttctt 141  Q
    ||||||||||| ||| ||||| |||||||||||||||| ||||    
T  4734486 cacttaattttttttgtatttcgtttcatgtttagaagctctt 4734444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 138221 - 138377
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacg-ccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    ||||||||||||||||||||| ||||  || | |||  |||||||||||||  ||   |||||| |||||||| ||||||||||||||||||||||||||    
T  138221 gcataaaccattcgttttcccctttct-acgaagtagtagtgacattccaagtgaaaaccgttaagtaaatttcacctctctttcacttaattttatttt 138319  T
Q  116 attttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
     ||||||||| |||||| |||||||| ||| | |||||| |||||||| |||||||||    
T  138320 gttttgtttcctgtttaaaagttcttttgattttgatttcttaatgaaacttagctac 138377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 20976046 - 20976218
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||||||||||||||  ||||||| ||||||||||   |||||||||||| || |||||||  |||||| ||| ||||||| |||||| |||||||||||    
T  20976046 caatcatttctttttcacataaactattcgttttcgtctttcccacaacggataagtgacaaatccaaatgacaccgttag-taaattctacctctcttt 20976144  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    ||||||||||| || ||||| |||  ||||||| ||| |||| ||| | |||||||||||| |||| |||||||    
T  20976145 cacttaatttttttgtatttggttcaatgtttaaaagctcttctgattatgattttttaataaagcatagctac 20976218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 40956374 - 40956475
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||| | | ||||||| | |||||||||||||||||| ||||||| ||||||||||    
T  40956374 caatcatttcttttttgcatacaccattcgttttcccctttcccacaatggaagagtgacaaatccaaacgacgccgttagataaatttcacctctcttt 40956473  T
Q  100 ca 101  Q
    ||    
T  40956474 ca 40956475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 42291884 - 42291643
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||||||||||||||  |||||||||||||||||||| ||||||||  || || |||||||  |||||| | |  |||| |||||||| |||||||||||    
T  42291884 caatcatttctttttcacataaaccattcgttttcccctttcccaccgcggataagtgacaaatccaaatgtcatcgtt-ggtaaattctacctctcttt 42291786  T
Q  100 cacttaattttattt--tattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttatttt 197  Q
    ||||||||||| |||  ||||| |||||||||||||||| |||| ||| ||||||||||| || ||| ||| ||||         |||||||||||||||    
T  42291785 cacttaatttttttttgtatttcgtttcatgtttagaagctcttctgattctgatttttttataaagtttaactacacaaaaaaattgcgtttttatttt 42291686  T
Q  198 act-ggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    | | || | ||| |||||| |||||  |||||||||||||||||    
T  42291685 attggggggcta-tttaaatagagagccgagcctcctatttcat 42291643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 5829444 - 5829614
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||||||||||||||  ||||||||||||||||| || ||||| |||||| ||  ||||| | |||||||||| | |||| ||||| | |||||||||||    
T  5829444 caatcatttctttttcacataaaccattcgtttttccctttcctacaacggataggtgacaaatccaaacgacactgtta-gtaaactctacctctcttt 5829542  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    ||||||||||| || |||||  ||  ||||||||||| |||| ||| |||||||||||||| ||| ||||||||    
T  5829543 cacttaatttttttgtatttcatt--atgtttagaagctcttctgattctgattttttaataaagtttagctac 5829614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 173
Target Start/End: Original strand, 23069350 - 23069457
Alignment:
Q  65 caaacgacgccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaag 164  Q
    |||||||| ||||||||||||||| || | ||||||| |||||||| |||||||  ||||||| ||||||||||||| | | | ||||||||||||||||    
T  23069350 caaacgacaccgttaggtaaatttcacatttctttcatttaatttt-ttttattacgtttcatatttagaagttcttctaattttgattttttaatgaag 23069448  T
Q  165 cttagctac 173  Q
    |||||||||    
T  23069449 cttagctac 23069457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 40779252 - 40779391
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    |||||||||||||||| | ||||||||||||||||||  |||||||||| | | ||||||||  || |||||||  | |||||||||||| |||||||||    
T  40779252 caatcatttcttttttcgtataaaccattcgttttcc--tttcccacaatggaggagtgacaaatcgaaacgacatcattaggtaaatttcacctctctt 40779349  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttctt 141  Q
    |||||||||||| ||||||||  ||||||||||| || |||||    
T  40779350 tcacttaatttt-ttttatttcatttcatgtttaaaatttctt 40779391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 4177358 - 4177433
Alignment:
Q  97 tttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    |||| ||||||||| |||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| ||||    
T  4177358 tttcgcttaatttt-ttttattttgtttcatgtttagaagttcttctgattatgattttttaatgaagcttaactac 4177433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 12661387 - 12661524
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||||||||||||||||| || ||| |||||||  | ||||||||  |||||||||| | ||||| ||||||| || |||  |||||||||||||  |||    
T  12661387 gcataaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacgacactgttagataaatttcacatct--ttcacttaatttt--ttt 12661482  T
Q  116 attttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    | ||  |||||||||||||||||||| ||| |||||||||||    
T  12661483 aattcctttcatgtttagaagttcttctgattctgatttttt 12661524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 13423925 - 13424081
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| || ||| ||||||   | ||||||||  || ||||||| ||||| | ||||||| ||||||  |    
T  13423925 caatcatttttttcttcgcataaaccattcgttttacccttttccacaatagaggagtgacaaatctaaacgacaccgttcgataaatttcacctct--t 13424022  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||||| ||||| ||  ||||||||||| |||||||| ||| |||||||||||    
T  13424023 tcacttaatttttttttaattcctttcatgtttaaaagttcttctgattctgatttttt 13424081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 13474691 - 13474846
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| || ||| |||||||  | ||||||||  |||||||||| ||||||| ||||||||||  |||||    
T  13474691 caatcatttttttcttcgcataaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacgacaccgttagataaattttac--ctctt 13474788  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||||| || || ||  |||||| ||||||| ||||| | | |||||||||||    
T  13474789 tcacttaatttt-ttgtaattcctttcatttttagaacttcttcttattctgatttttt 13474846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 26377759 - 26377622
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||||||||||||||||| ||||||  ||||||  | ||||||||  |||||||||| ||||||| ||||||| |  ||||||||||||||| ||  |||    
T  26377759 gcataaaccattcgttttaccttttttcacaactgaggagtgacaaatccaaacgacaccgttagataaatttca--tctctttcacttaatatt--ttt 26377664  T
Q  116 attttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    | ||  |||||||||||||| ||||| ||| |||||||||||    
T  26377663 aattcctttcatgtttagaacttcttctgattctgatttttt 26377622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 173
Target Start/End: Original strand, 26312113 - 26312221
Alignment:
Q  63 tccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctga-ttttttaatg 161  Q
    |||||||||| ||||||| ||||||| ||||||  ||||||||||||| ||||| ||  |||||||||||||| ||||| ||| ||||| ||||||||||    
T  26312113 tccaaacgacaccgttagataaatttcacctct--ttcacttaatttt-ttttaattcctttcatgtttagaacttcttctgattctgatttttttaatg 26312209  T
Q  162 aagcttagctac 173  Q
    ||  ||||||||    
T  26312210 aaatttagctac 26312221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 17462993 - 17463078
Alignment:
Q  90 acctctctttcacttaattttatt--ttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    ||||||||||| ||||||||| ||  |||||| ||||||||||||||||||||| | | |||  ||||||||||||||||| ||||    
T  17462993 acctctctttcgcttaatttttttatttatttcgtttcatgtttagaagttcttctaattctagttttttaatgaagcttaactac 17463078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 13288615 - 13288676
Alignment:
Q  112 ttttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    ||||||||||||||||||||| | |||||| ||| | ||||||||||||||| |||||||||    
T  13288615 ttttattttgtttcatgtttaaatgttcttctgattatgattttttaatgaaacttagctac 13288676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 19099253 - 19099145
Alignment:
Q  63 tccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctga--ttttttaat 160  Q
    |||||||||| ||||||| ||||||| ||||||  |||||||||||||  || ||| | |||||||||||||||||||| ||| |||||  ||||| |||    
T  19099253 tccaaacgacaccgttagataaatttcacctct--ttcacttaatttttcttaattct-tttcatgtttagaagttcttctgattctgaattttttcaat 19099157  T
Q  161 gaagcttagcta 172  Q
    |||| |||||||    
T  19099156 gaagtttagcta 19099145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 931437 - 931670
Alignment:
Q  2 aatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtg-acattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||||||||||||| ||||||||||||||||||| | |||||||||||  | ||||| | | ||||||||||          | |||| |||||||||||    
T  931437 aatcatttctttttcgcataaaccattcgttttctcctttcccacaacagacgagtgaagagtccaaacgac---------aacatttcacctctctttc 931527  T
Q  101 actta--attttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttatttta 198  Q
    |||||  ||||| ||| |||| |||||||||||||||||| || | | |||||||||  |||| | ||||| |||         |||| ||||| |||||    
T  931528 acttaatattttttttaatttcgtttcatgtttagaagtttttctaattctgattttccaatgcaacttagttacacaaaaaacttgcatttttgtttta 931627  T
Q  199 ct-ggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    || |  ||||||||||||||||||  ||| |||||||||||||    
T  931628 ctagaggtctattttaaaaagagagccgaacctcctatttcat 931670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 157
Target Start/End: Original strand, 37046906 - 37046997
Alignment:
Q  63 tccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||| ||||||| ||||||| ||||||  |||| |||||||| ||||| ||| |||||||||||||| ||||| | | |||||||||||    
T  37046906 tccaaacgacaccgttagataaatttcacctct--ttcatttaatttt-ttttaatttctttcatgtttagaacttcttctaattctgatttttt 37046997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 16061081 - 16061131
Alignment:
Q  123 ttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    ||||||||||||| || || ||| |||||||||||||||||||||| ||||    
T  16061081 ttcatgtttagaattttttctgattctgattttttaatgaagcttaactac 16061131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 13474898 - 13474931
Alignment:
Q  206 ctattttaaaaagagattcgagcctcctatttca 239  Q
    |||||||||||||||| |||||||||||||||||    
T  13474898 ctattttaaaaagagagtcgagcctcctatttca 13474931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 26377572 - 26377539
Alignment:
Q  206 ctattttaaaaagagattcgagcctcctatttca 239  Q
    |||||||||||||||| |||||||||||||||||    
T  26377572 ctattttaaaaagagagtcgagcctcctatttca 26377539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 46904803 - 46905043
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||| |||||||||||||||||||| ||  |||| || ||||| || ||||| ||||||||||||||||||| ||||||||||||||| |||||||||||    
T  46904803 caattatttcttttttgcataaaccttttatttttccctttcctacgacgtaggagtgacattccaaacgacaccgttaggtaaatttcacctctctttc 46904902  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac-nnnnnnnnnttgcgtttttattttac 199  Q
    ||||||||||||||| |||||||||||||||| |||||||| | | ||||||||||||||||||||| |||||          |||  ||||||||||||    
T  46904903 acttaattttattttgttttgtttcatgtttaaaagttcttcttattctgattttttaatgaagcttcgctacacataaaaaattgaatttttattttac 46905002  T
Q  200 tggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    |||   |||||||||||| |||  |||||||||||||||||    
T  46905003 tggaacctattttaaaaatagaaccgagcctcctatttcat 46905043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 7767144 - 7767367
Alignment:
Q  18 cataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttat 117  Q
    ||||||| |||||||||||| ||||| |  ||||| ||||||||||||||| ||| | ||||||||||||| || |||||||||||||||||||||||||    
T  7767144 cataaactattcgttttcccatttcctaagacgtaggagtgacattccaaatgacacagttaggtaaatttcacatctctttcacttaattttattttat 7767243  T
Q  118 tttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac-nnnnnnnnnttgcgtttttattttactggtgtctattttaaaa 216  Q
    ||||||||||||||| |||||||| ||| ||||| |||||||||||||||||||||           ||||||||||| ||||| | | |||||||||||    
T  7767244 tttgtttcatgtttaaaagttcttctgattctgactttttaatgaagcttagctacacacaaaaaaatgcgtttttatcttacttgggcctattttaaaa 7767343  T
Q  217 agagattcgagcctcctatttcat 240  Q
    | |||  |||||||||||||||||    
T  7767344 atagaaccgagcctcctatttcat 7767367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 27303248 - 27303413
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||| |||||||||| |||||||| ||| ||||||||||| || || ||||| ||||||||||| ||||||| || |||||||||||| |||||||||||    
T  27303248 caattatttctttttcgcataaactatttgttttcccttt-cctacgacgtaggagtgacattc-aaacgacaccattaggtaaatttcacctctctttc 27303345  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagctta 168  Q
    ||||||||||||||| |||||||||||||||| |||||||| ||| ||||||||||||||||||||||    
T  27303346 acttaattttattttgttttgtttcatgtttaaaagttcttctgattctgattttttaatgaagctta 27303413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 51147015 - 51147170
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttta 116  Q
    ||||||||||||||||||||||||||  || || ||  |||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||     
T  51147015 gcataaaccattcgttttcccttttct-acgacatagaagtgacattccaaacgacaccgttaggtaaattttatctctctttcacttcattttattttg 51147113  T
Q  117 ttttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    ||||||||| ||||||  ||||||| ||| | |||||||||||||||||||| ||||    
T  51147114 ttttgtttcgtgtttaagagttcttctgattatgattttttaatgaagcttacctac 51147170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 43905856 - 43905616
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||||||||||||||  |||||||||||| |||| || ||||||||| || || |||||||  |||||| ||| ||||||| |||||| |||||||||||    
T  43905856 caatcatttctttttcacataaaccattcatttttccctttcccacagcggataagtgacaaatccaaatgacaccgttag-taaattctacctctcttt 43905758  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttattttac 199  Q
    ||||||||||| || ||||| |||||||||||||||| |||| ||| |||  ||||||| | ||||||| | ||         ||||||||||||||||     
T  43905757 cacttaatttttttgtatttcgtttcatgtttagaagctcttatgattctatttttttagtaaagcttaacaacacaaaaaaattgcgtttttattttat 43905658  T
Q  200 t-ggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    | || |||||||||||| ||||| ||||||||||||||||||    
T  43905657 tgggggtctattttaaatagagagtcgagcctcctatttcat 43905616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 40152132 - 40151895
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    ||||||||||||||  |||||||||||| |||| |||||| ||||||||| | || ||| |  ||||||| || || |||||||||||| ||||||||||    
T  40152132 caatcatttcttttgcgcataaaccatttgtttccccttt-cccacaacggaggaatgatacatccaaacaacacctttaggtaaatttcacctctcttt 40152034  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttattttac 199  Q
    || |||||||| |||||||| ||||||| |||| ||||| || ||| |||||||||||||||||||||| ||||         ||   |||||||||||     
T  40152033 catttaatttt-ttttatttcgtttcatatttaaaagtttttatgattctgattttttaatgaagcttaactacacaaaacaattatatttttatttta- 40151936  T
Q  200 tggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
     || |||||||||||||||||| ||||||||||||||||||    
T  40151935 gggagtctattttaaaaagagagtcgagcctcctatttcat 40151895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 42009265 - 42009156
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||| ||||||||||  |||||||||||||||||||| ||||| || ||||| ||||||||||||||||||   |||||| ||||||| |||||||||||    
T  42009265 caattatttctttttcacataaaccattcgttttcccctttcctacgacgtaagagtgacattccaaacgaaatcgttagataaatttcacctctctttc 42009166  T
Q  101 acttaatttt 110  Q
    ||||| ||||    
T  42009165 acttagtttt 42009156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 24252681 - 24252837
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| || ||| |||||||  ||||||||||  |||||||||| ||||||| ||||||| ||||||  |    
T  24252681 caatcatttttttcttcgcataaaccattcgttttacccttttccacaacagatgagtgacaaatccaaacgaccccgttagataaatttcacctct--t 24252778  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||||| ||||| ||  |||||||||||||| ||||| ||| ||| |||||||    
T  24252779 tcacttaatttttttttaattcctttcatgtttagaacttcttctgattctaatttttt 24252837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 48627032 - 48626792
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    ||||||||| |||||  ||||||||||||||||||||  |||||||| || || |||||| | |||||| ||| | |||| ||||||| |||||||||||    
T  48627032 caatcatttatttttcacataaaccattcgttttccc-attcccacagcggataagtgacaaatccaaatgacactgtta-gtaaattctacctctcttt 48626935  T
Q  100 cacttaattttattt-tattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttatttta 198  Q
    |||||| |||| ||| ||||| |||||||||||||||| |||| ||| ||| ||||||| || ||| ||| ||||         ||||||||||||||||    
T  48626934 cacttatttttttttgtatttcgtttcatgtttagaagctcttctgattctaatttttttataaagtttaactacacaaaaaaattgcgtttttatttta 48626835  T
Q  199 ctg-gtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
     ||   | |||||||||| |||||  |||||||||||||||||    
T  48626834 ttgaaggcctattttaaatagagaaccgagcctcctatttcat 48626792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 50677317 - 50677187
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||| |||||||||| |||||||| |||||||||||| ||||| || | ||| ||||||||||||||||||  | ||||| ||||||| | |||||||||    
T  50677317 caattatttctttttcgcataaacaattcgttttcccctttcctacgatgtaggagtgacattccaaacgaaactgttagataaatttcatctctctttc 50677218  T
Q  101 acttaattttattttattttgtttcatgttt 131  Q
    ||||   |||||||| |||| ||||||||||    
T  50677217 actttgctttattttgttttatttcatgttt 50677187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 19965867 - 19965716
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccg--ttaggtaaattttacctctctttcacttaattttatt 113  Q
    ||||||||||||||||||| | |||||||||||| |||| ||| |  | |||| || ||||  |||||||||||| ||||||||||||||| ||||| ||    
T  19965867 gcataaaccattcgttttctcctttcccacaacggatgaatgagaaattcaaatgatgccgctttaggtaaatttcacctctctttcactt-attttttt 19965769  T
Q  114 ttattttgtttcatgtttagaagttcttgtgaatctgat-tttttaatgaagc 165  Q
    ||||||  |||||||||||||||||||| ||| | |||| |||||||||||||    
T  19965768 ttatttcctttcatgtttagaagttcttctgattttgatatttttaatgaagc 19965716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 28132738 - 28132566
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    ||||||||| || || |||||||||||||||||| || ||| |||||||  | ||||||| | | |||||||||||||||| ||||||| ||  ||||||    
T  28132738 caatcattttttcttcgcataaaccattcgttttaccattttccacaacagaggagtgacaagttcaaacgacgccgttagataaatttcac--ctcttt 28132641  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatt--ttttaatgaagcttagctac 173  Q
    ||||||||||| ||||| ||  |||||||||||||||||||| ||| | |||||  ||||||||||  ||||||||    
T  28132640 cacttaatttt-ttttaattcctttcatgtttagaagttcttctgattttgatttcttttaatgaaatttagctac 28132566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 21596396 - 21596566
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattc-caaacgacgccgttaggtaaattttacctctcttt 99  Q
    ||||||||| ||||||||  |||||||| ||||| || ||||| |||| | | ||||||||    |||||||||| ||||||||||||| |  | |||||    
T  21596396 caatcatttattttttgctcaaaccatttgtttttccctttcc-acaatggaggagtgacaaaatcaaacgacgctgttaggtaaatttcatttttcttt 21596494  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagcta 172  Q
    || |||||| | |||||||   |||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  21596495 catttaattct-ttttattacatttcatgtttagaagttcttttgattctgattttttaatgaagcttagcta 21596566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 25599073 - 25598912
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||||||||||||||||| || ||| |||||||  | ||||||||  | |||||||| ||||||| ||||||| ||||||  ||||||||||||| ||||    
T  25599073 gcataaaccattcgttttacccttttccacaacagaggagtgacaaattcaaacgacaccgttagataaatttcacctct--ttcacttaattttttttt 25598976  T
Q  116 attt----tgtttcatgtttagaagttcttgtgaatctgatt--ttttaatgaagcttagctac 173  Q
     |||    | |||||||||||||||||||| ||| |||||||  ||||||||||| ||||||||    
T  25598975 ttttaatttctttcatgtttagaagttcttctgattctgattttttttaatgaagtttagctac 25598912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 23164558 - 23164420
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||||||||||||||||| |||||| |||||||  | ||||||| | |||||||||| ||||| | ||||||| ||  ||||||||||||||||| ||||    
T  23164558 gcataaaccattcgttttacctttttccacaacagaggagtgacaaatccaaacgacaccgttggataaatttcac--ctctttcacttaatttt-tttt 23164462  T
Q  116 attttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    | ||  |||||| ||||||||||||| ||| ||| |||||||    
T  23164461 aattcttttcatatttagaagttcttctgattctaatttttt 23164420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 52655109 - 52654970
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||||||||||||||||| || ||| ||||||| || ||||||||  | |||||||  ||||||| ||||||| ||||||  |||||||| |||| ||||    
T  52655109 gcataaaccattcgttttacccttttccacaacataggagtgacaaattcaaacgataccgttagataaatttcacctct--ttcacttatttttttttt 52655012  T
Q  116 attttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    | ||  |||||||||||||||||||| ||| ||| |||||||    
T  52655011 aattcctttcatgtttagaagttcttctgattctaatttttt 52654970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 21784769 - 21784627
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||||||||||||||||| || ||| |||||||  | ||||||||  |||||||||||||||||| ||||||| ||  ||||||||||||||||| ||||    
T  21784769 gcataaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacgacgccgttagataaatttcac--ctctttcacttaatttt-tttt 21784673  T
Q  116 attttgtttcatgt----ttagaagttcttgtgaatctgatttttt 157  Q
    | ||  ||||||||    |||||||||||| ||| |||||||||||    
T  21784672 aattcctttcatgtttaattagaagttcttttgattctgatttttt 21784627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 1255055 - 1254892
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||| |||| ||||| ||||||||||||||||||||| |||||| ||||    |||||  | || | || || |||||||||| |||| |||||| ||||    
T  1255055 caataatttgtttttcgcataaaccattcgttttcccctttcccgcaaca---gagtgcaaatctagacaacaccgttaggtagatttcacctctttttc 1254959  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
     ||||||||  |||||||| ||||||||||||||| ||      | ||||||||||||||||| |||||||||    
T  1254958 gcttaatttctttttatttcgtttcatgtttagaaatt------attctgattttttaatgaaacttagctac 1254892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 27110858 - 27110723
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||||||||||||||||| || ||| |||||||  | ||||||||  | |||||||| ||||||| ||||||| ||||||  ||||||||||||| ||||    
T  27110858 gcataaaccattcgttttacccttttccacaacagaggagtgacaaattcaaacgacaccgttagataaatttcacctct--ttcacttaatttt-tttt 27110762  T
Q  116 attttgtttcatgtttagaagttcttgtgaatctgattt 154  Q
    | ||  |||||||||||||| ||||| ||| ||||||||    
T  27110761 aattcctttcatgtttagaacttcttatgattctgattt 27110723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 51939540 - 51939403
Alignment:
Q  18 cataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttta 116  Q
    ||||||||||||||||| || ||| ||||||| ||  |||||||  |||||||||| | ||| | ||||||| ||||||  ||||||||||||| |||||    
T  51939540 cataaaccattcgttttacccttttccacaacatagaagtgacaaatccaaacgacacagttggttaaatttcacctct--ttcacttaatttt-tttta 51939444  T
Q  117 ttttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
     ||  |||||||||||||||||||| | | |||||||||||    
T  51939443 attcctttcatgtttagaagttcttctcattctgatttttt 51939403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 6715500 - 6715655
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgtttt-cccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||||| |||||||||||||||||| ||||||| |||||||  | ||||||| | |||||||||| || |||  ||||||| ||  |||||    
T  6715500 caatcatttttttttcgcataaaccattcgttttaccctttttccacaacagaggagtgacaaatccaaacgacaccattatataaatttcac--ctctt 6715597  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||||| ||||| ||  || ||||||||||  ||||| ||  |||||||||||    
T  6715598 tcacttaatttt-ttttaattccttccatgtttagatcttcttctgcttctgatttttt 6715655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 18408252 - 18408391
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| |||||| |||||||| ||||||||| || ||| |||||||  |  |||||||  |||||||||| ||||| | ||||||| ||||||  |    
T  18408252 caatcattttttttttcgcataaacaattcgttttacccttttccacaacagagcagtgacaaatccaaacgacaccgtttgataaatttcacctct--t 18408349  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttctt 141  Q
    |||||||||||| ||||| ||  ||||||||||||||||||||    
T  18408350 tcacttaatttt-ttttaattcctttcatgtttagaagttctt 18408391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 29387757 - 29387601
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| || ||| | ||||   | ||||||||  ||||||| || ||||||| ||||||| ||||||  |    
T  29387757 caatcatttttttcttcgcataaaccattcgttttacccttttctacaatagaggagtgacaaatccaaacaacaccgttagataaatttcacctct--t 29387660  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||||| ||||   || ||||||||||| |||||||| ||| |||||||||||    
T  29387659 tcacttaattttttttttaattctttcatgtttataagttcttctgattctgatttttt 29387601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 240
Target Start/End: Complemental strand, 1649749 - 1649604
Alignment:
Q  97 tttcacttaattttat-tttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttatt 195  Q
    ||||||||| |||| | ||||||| ||||||||||||||||||||| | | || |||||||||||||||||| | |||         ||| |||||||||    
T  1649749 tttcacttatttttttctttatttcgtttcatgtttagaagttcttataactccgattttttaatgaagcttcggtacacaaacaaattgtgtttttatt 1649650  T
Q  196 ttactggtg-tctattttaaaaagagattcgagcctcctatttcat 240  Q
    ||||||| |  |||||||||| |||||  ||||||||| |||||||    
T  1649649 ttactggggaactattttaaatagagagccgagcctcccatttcat 1649604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 27729755 - 27729633
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||||||||||||||||| || |||  |||||| ||  |||||||  |||||||||| | ||||| ||||||| ||||||  ||||||||||||| ||||    
T  27729755 gcataaaccattcgttttaccctttttcacaacatagaagtgacaaatccaaacgacactgttagataaatttcacctct--ttcacttaatttt-tttt 27729659  T
Q  116 attttgtttcatgtttagaagttctt 141  Q
    | ||  ||||||||||||||||||||    
T  27729658 aattcctttcatgtttagaagttctt 27729633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 15998418 - 15998483
Alignment:
Q  74 ccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttctt 141  Q
    ||||||||||||||| || |||||||||||||||||  || | ||| |||||||||||||||||||||    
T  15998418 ccgttaggtaaatttcacatctctttcacttaattt--ttctgtttcgtttcatgtttagaagttctt 15998483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 36538189 - 36538109
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttagg 81  Q
    |||| |||||||||| ||||||||||||||||||||| ||||| || | | | ||||||||||| |||||| || ||||||    
T  36538189 caattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggagtgacattctaaacgatgctgttagg 36538109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 54430613 - 54430754
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacg-acgccgttaggtaaattttacctctct 97  Q
    ||||||||| ||| || |||||||||||||||||| || ||| |||||||  | ||||||||  |||||||| |  ||||||| ||||||| |||| |      
T  54430613 caatcatttttttcttcgcataaaccattcgttttacccttttccacaacaaacgagtgacaaatccaaacggataccgttagataaatttcaccttt-- 54430710  T
Q  98 ttcacttaattttattttattttgtttcatgtttagaagttctt 141  Q
    ||||||||||||| ||||| ||  ||||||||||||||||||||    
T  54430711 ttcacttaatttttttttaattcctttcatgtttagaagttctt 54430754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 141
Target Start/End: Complemental strand, 46791636 - 46791561
Alignment:
Q  63 tccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttctt 141  Q
    |||||||||| ||||||| ||||||| ||||||  ||||||||||||| ||||| ||  ||||||||||||||||||||    
T  46791636 tccaaacgacaccgttagataaatttcacctct--ttcacttaatttt-ttttaattcctttcatgtttagaagttctt 46791561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 15987263 - 15987321
Alignment:
Q  3 atcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgaca 61  Q
    ||||||| ||||| |||||||||||||||||| || |||||||||||| | ||||||||    
T  15987263 atcatttatttttcgcataaaccattcgtttttccctttcccacaacggaggagtgaca 15987321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 157
Target Start/End: Original strand, 8364298 - 8364389
Alignment:
Q  63 tccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||| ||||||| ||||||| ||||||  |||||||||| || ||||| ||  |||||||||||||| ||||| ||| ||| |||||||    
T  8364298 tccaaacgacaccgttagataaatttcacctct--ttcacttaatgtt-ttttaattcctttcatgtttagaacttcttctgattctaatttttt 8364389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 20762203 - 20762266
Alignment:
Q  94 ctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    ||||||||||||||||| ||||| ||  |||||| |||||||||||||  || |||||||||||    
T  20762203 ctctttcacttaatttttttttaattcatttcatatttagaagttcttccgattctgatttttt 20762266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 27110669 - 27110636
Alignment:
Q  204 gtctattttaaaaagagattcgagcctcctattt 237  Q
    |||||||||||||||||| |||||||||||||||    
T  27110669 gtctattttaaaaagagagtcgagcctcctattt 27110636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 51147187 - 51147239
Alignment:
Q  188 tttttattttactggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    |||| |||||| ||| |||||||||||||| |||  |||||||||||||||||    
T  51147187 ttttaattttattggggtctattttaaaaatagaaccgagcctcctatttcat 51147239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 3628750 - 3628598
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||| |||||||||| |||||||||||||||||| || ||||| || ||||| ||||||||||||||||||| | ||||||||||||| |||||||||||    
T  3628750 caattatttctttttcgcataaaccattcgtttttccgtttcctacgacgtaggagtgacattccaaacgacacagttaggtaaatttcacctctctttc 3628651  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatt 153  Q
    ||||||||||||||| |||| ||||||||||| |||||||| ||| |||||||    
T  3628650 acttaattttattttgttttctttcatgtttaaaagttcttttgattctgatt 3628598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 42076187 - 42076342
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttta 116  Q
    |||||||| |||||||||||| ||| | || | ||| ||||||||||||||| ||| ||||||||||||||| |||| |||||||||||||||||||||     
T  42076187 gcataaactattcgttttccccttttctacga-gtaggagtgacattccaaatgacaccgttaggtaaatttcacctatctttcacttaattttattttg 42076285  T
Q  117 ttttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    |||||||||||||||| |||||||| ||| |||||||||||||||||||||| ||||    
T  42076286 ttttgtttcatgtttaaaagttcttttgattctgattttttaatgaagcttatctac 42076342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 17 - 163
Target Start/End: Complemental strand, 36515142 - 36514996
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttta 116  Q
    ||||||| |||| |||||||| ||||| || ||||| ||||||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||||||     
T  36515142 gcataaatcatttgttttcccatttcctacgacgtaggagtgacattccaaacgacaccgttagataaatttcagctctctttcacttaattttattttg 36515043  T
Q  117 ttttgtttcatgtttagaagttcttgtgaatctgattttttaatgaa 163  Q
    ||||||||| |||||| |||||||| ||| |||||||||||||||||    
T  36515042 ttttgtttcgtgtttaaaagttcttctgattctgattttttaatgaa 36514996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 12531620 - 12531792
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||||||||||||||  ||||||||||| |||||||| |||||||||||| || | |||||  | |||||||||||||||| |||||| |||||||||||    
T  12531620 caatcatttctttttcacataaaccatttgttttcccctttcccacaacggataaatgacaaattcaaacgacgccgttag-taaattatacctctcttt 12531718  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    ||||||||||| || ||||| |||||||||||||||| |||| | | |||||||||||||| ||||||||||||    
T  12531719 cacttaatttttttatatttcgtttcatgtttagaagctcttcttattctgattttttaataaagcttagctac 12531792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 32098181 - 32098012
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||| ||||||||||||||||||||||||||||||||  ||||||||||  | ||||||| | |||||||||| |||||| |||||||| || |||||||    
T  32098181 caattatttcttttttgcataaaccattcgttttccccattcccacaacagaggagtgacgaatccaaacgacaccgttacgtaaatttcacttctcttt 32098082  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttag 169  Q
    ||||||||||| |||||||| ||||||||||||||||||| | ||| |  ||||||||||||| ||||||    
T  32098081 cacttaatttttttttatttcgtttcatgtttagaagttcatctgatttcgattttttaatgatgcttag 32098012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 34523954 - 34523717
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||||||||||||||   ||||||||||||||||||| |||||||||||| || |||||||  |||||||||| ||||||  |||||| |||||||  ||    
T  34523954 caatcatttctttttcatataaaccattcgttttcccctttcccacaacggataagtgacaaatccaaacgacaccgttat-taaattctacctct--tt 34523858  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttattttac 199  Q
    ||||||||||| || ||||| |||||||||||||||| |||| ||| ||||| |||||||| ||||||||||||         ||||||||||||||||     
T  34523857 cacttaatttttttgtatttcgtttcatgtttagaagctcttctgattctga-tttttaataaagcttagctacacaaaaaaattgcgtttttattttat 34523759  T
Q  200 t-ggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    | || | |||||||||| |||||  |||||||||||||||||    
T  34523758 tgggggcctattttaaatagagagccgagcctcctatttcat 34523717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 37 - 169
Target Start/End: Original strand, 35874996 - 35875128
Alignment:
Q  37 cttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaag 136  Q
    ||||||| || ||||| |||||||||| |||| |||  ||||||||||| |  ||||||| ||||||||||||||||||||||||||||||||||| |||    
T  35874996 cttttcctacgacgtaggagtgacatttcaaatgacatcgttaggtaaactccacctctcgttcacttaattttattttattttgtttcatgtttaaaag 35875095  T
Q  137 ttcttgtgaatctgattttttaatgaagcttag 169  Q
    ||||| ||| |||||||||||||||||||||||    
T  35875096 ttcttctgattctgattttttaatgaagcttag 35875128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 29372418 - 29372554
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    ||||||||| ||||| ||||||||||||| ||||||| ||| |||| | | | |||||||| |||||||||| || |||||||||||| || | | ||||    
T  29372418 caatcatttatttttcgcataaaccattcattttcccctttgccacgatgaaggagtgacaatccaaacgacaccattaggtaaatttcacatttgtttc 29372517  T
Q  101 acttaattttattttattttgtttcatgtttagaagt 137  Q
    ||||||||||||||||||| |||||||||||||||||    
T  29372518 acttaattttattttatttcgtttcatgtttagaagt 29372554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 39697941 - 39697782
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||| ||||||||||| |||||||||||||||||| | |||||||||||| || |||||||  |||||| ||| | ||||| |||||| |||||||||||    
T  39697941 caattatttcttttttacataaaccattcgttttcgcctttcccacaacggataagtgacaaatccaaatgacactgttag-taaattctacctctcttt 39697843  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaat 160  Q
    |||||| |||| || ||||| |||||||||||||||  |||| ||| ||||||||||||||    
T  39697842 cacttattttttttgtatttcgtttcatgtttagaaactcttctgattctgattttttaat 39697782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 23567277 - 23567138
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||| ||||||||||  ||||||||||||||||| ||||||||||||||| || | |||| | ||||||||||||||||| ||||||| |||| ||||||    
T  23567277 caatgatttctttttcacataaaccattcgtttttccttttcccacaacggataaatgacaaatccaaacgacgccgtta-gtaaattctaccactcttt 23567179  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttctt 141  Q
    ||||||||||| || ||||| |||||||||||||||| ||||    
T  23567178 cacttaatttt-ttgtatttcgtttcatgtttagaagctctt 23567138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 13585360 - 13585515
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| || ||| |||||||  | ||||||||  |||||||||||||||||| ||||||| |||| |  |    
T  13585360 caatcatttttttcttcgcataaaccattcgttttacccttttccacaacagaggagtgacaagtccaaacgacgccgttagataaatttcaccttt--t 13585457  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||||| ||||| ||  |||||||||||||||||||| ||| |||||||||||    
T  13585458 tcacttaatttt-ttttaattcctttcatgtttagaagttcttctgattctgatttttt 13585515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 33452908 - 33452992
Alignment:
Q  89 tacctctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    ||||||| |||||||||||||| |||||||| ||||||||||||||||||||| | | | |||||||||||||||| ||||||||    
T  33452908 tacctctatttcacttaatttttttttatttcgtttcatgtttagaagttcttctaattatgattttttaatgaagtttagctac 33452992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 18420612 - 18420456
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| ||||||  ||||||  | ||||||||  |||||||||| ||||||| ||||||| |||| |  |    
T  18420612 caatcatttttttcttcgcataaaccattcgttttaccttttttcacaacagaggagtgacaaatccaaacgacaccgttagataaatttcaccttt--t 18420515  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||||| ||||| ||  ||||||||||||||||| || ||| |||||||||||    
T  18420514 tcacttaatttttttttaattcctttcatgtttagaagttattctgattctgatttttt 18420456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 42777806 - 42777966
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacatt-ccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    ||||||||| ||||  ||||| ||||||||||||| | |||||||||||| | ||||||||   |||||| || |||||  |||||||| ||||||||||    
T  42777806 caatcattttttttccgcatataccattcgttttctcatttcccacaacggaggagtgacaaaaccaaaccacaccgttcagtaaatttcacctctcttt 42777905  T
Q  100 cacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaat 160  Q
    |||||| |  | |||||||| ||||||||  ||||||||||  ||| ||| ||||||||||    
T  42777906 cacttattaattttttatttcgtttcatgaatagaagttctattgattctaattttttaat 42777966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 237
Target Start/End: Complemental strand, 30915217 - 30915052
Alignment:
Q  74 ccgttaggtaaattttacctctctttcacttaatt-ttatttt--attttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagc 170  Q
    |||| ||| |||||| | ||||||||||||||||| |||||||  |||| ||||||| |||||| |||||| ||| | ||||||||||||||| |||| |    
T  30915217 ccgtcaggaaaatttcaactctctttcacttaattattattttttatttcgtttcatttttagacgttcttctgattatgattttttaatgaaacttaac 30915118  T
Q  171 tacnnnnnnnnnttgcgtttttattttactggtgtctattttaaaaagagattcgagcctcctattt 237  Q
    |||         ||  |||||||||||| ||| ||||||||||||||||||  ||| ||||||||||    
T  30915117 tacataaaacaattatgtttttatttta-tggagtctattttaaaaagagagccgaacctcctattt 30915052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 1004138 - 1004272
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttta 116  Q
    |||||||||||||||||| || ||| |||||||  | ||||||||   |||||||| ||||||| ||||||| ||  ||||||||||||||||  |||||    
T  1004138 gcataaaccattcgttttacccttttccacaacagaggagtgaca--acaaacgacaccgttagataaatttcac--ctctttcacttaattt--tttta 1004231  T
Q  117 ttttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
     ||  ||||||||||| || ||||| ||| |||||||||||    
T  1004232 attcctttcatgtttaaaacttcttctgattctgatttttt 1004272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 43926326 - 43926155
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||| ||| || ||| ||||||   | ||||||||  |||||||||| ||||||  ||||||| ||||||  |    
T  43926326 caatcatttttttcttcgcataaaccattcgctttacccttttccacaatagaggagtgacaaatccaaacgacaccgttacataaatttcacctct--t 43926229  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    || ||||||||| ||||| ||  |||||||||||||| ||||| ||| |||||||||||| ||||  ||||||||    
T  43926228 tctcttaatttt-ttttaattcctttcatgtttagaacttcttctgattctgattttttagtgaaatttagctac 43926155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 43968073 - 43967918
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| |  ||| |||||||  | ||||||||  ||||||||||  | |||| ||||||| ||||||  |    
T  43968073 caatcatttttttcttcgcataaaccattcgttttactcttttccacaacagaggagtgacaaatccaaacgacatccttagataaatttcacctct--t 43967976  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||||| ||||| ||  |||||| ||||||||||||| ||| |||||||||||    
T  43967975 tcacttaatttt-ttttaattcctttcatatttagaagttcttctgattctgatttttt 43967918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 12268834 - 12268755
Alignment:
Q  93 tctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    |||||||| |||||| || |||||||| ||||||||||||| |||| || ||| | |||||||||||||||||||| ||||    
T  12268834 tctctttcgcttaatatt-ttttatttcgtttcatgtttagtagttattctgattatgattttttaatgaagcttatctac 12268755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 157
Target Start/End: Original strand, 3445660 - 3445751
Alignment:
Q  63 tccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||| ||||||| |||||||  |||||  | ||||||||||| ||| ||| | |||||||||||||||||||| ||| |||||||||||    
T  3445660 tccaaacgacaccgttagataaatttcgcctct--tccacttaattttttttaattct-tttcatgtttagaagttcttctgattctgatttttt 3445751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 173
Target Start/End: Original strand, 3471725 - 3471833
Alignment:
Q  63 tccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctga--ttttttaat 160  Q
    |||||||||| ||||||| ||||||| |||| |  |||||||||||||  |||| ||  ||| |||||||||||||||| ||| |||||  |||||||||    
T  3471725 tccaaacgacaccgttagataaatttcacctat--ttcacttaatttt--tttaattcctttaatgtttagaagttcttatgattctgattttttttaat 3471820  T
Q  161 gaagcttagctac 173  Q
    |||| ||||||||    
T  3471821 gaagtttagctac 3471833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 42951723 - 42951643
Alignment:
Q  74 ccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    ||||||| ||||||| ||||||  ||||||||||||| ||||| ||  |||||||||| ||||||||| ||| |||||||||||    
T  42951723 ccgttagataaatttcacctct--ttcacttaatttt-ttttaattcctttcatgtttggaagttcttatgattctgatttttt 42951643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 7858146 - 7858300
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| || ||| |||||||  | |||||| |  |||||| ||| ||||||| ||||||| ||||||  |    
T  7858146 caatcatttttttcttcgcataaaccattcgttttacccttttccacaacagaggagtgaaaaatccaaatgacaccgttagataaatttcacctct--t 7858243  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||| || || |||||||   |||||||||||||| ||||| ||| |||||||||||    
T  7858244 tcactttatctt-ttttattcc-tttcatgtttagaacttcttctgattctgatttttt 7858300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 35875147 - 35875202
Alignment:
Q  185 gcgtttttattttactggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    |||||||||||||||| | |||||||||||||| |||  ||| |||||||||||||    
T  35875147 gcgtttttattttactcgagtctattttaaaaatagaaccgaacctcctatttcat 35875202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 3445800 - 3445833
Alignment:
Q  206 ctattttaaaaagagattcgagcctcctatttca 239  Q
    |||||||||||||||| |||||||||||||||||    
T  3445800 ctattttaaaaagagagtcgagcctcctatttca 3445833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 13585573 - 13585606
Alignment:
Q  206 ctattttaaaaagagattcgagcctcctatttca 239  Q
    |||||||||||||||| |||||||||||||||||    
T  13585573 ctattttaaaaagagagtcgagcctcctatttca 13585606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 7858334 - 7858382
Alignment:
Q  189 ttttattttact-ggtgtctattttaaaaagagattcgagcctcctatt 236  Q
    |||||||||||| || | |||||||||||||||| ||||||||||||||    
T  7858334 ttttattttactaggggcctattttaaaaagagagtcgagcctcctatt 7858382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 35653983 - 35653811
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    |||| |||||||||| |||||||| ||||||||| || ||||| || ||||| |||||||||| |||| ||| ||||||| ||||||| |||||||||||    
T  35653983 caattatttctttttcgcataaactattcgtttttccctttcctacgacgtaggagtgacatttcaaatgacaccgttagataaatttcacctctctttc 35653884  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    ||||||||||||||| |||||||||||||||| |||||||| ||| || || |||||||||||||||| ||||    
T  35653883 acttaattttattttgttttgtttcatgtttaaaagttcttctgattcggactttttaatgaagcttaactac 35653811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 21791550 - 21791313
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    ||||||||||||||| |||||||||||| |||| |||||| ||||| ||| |||||||||| ||||||||||   ||||||||||||| ||||||||||     
T  21791550 caatcatttctttttcgcataaaccatttgtttccccttt-cccacgacgaatgagtgacaatccaaacgacattgttaggtaaatttcacctctcttta 21791452  T
Q  101 acttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttattttact 200  Q
    | || ||||||||||||||  |||||||||||||||||||| ||| ||| | |||||||| ||| |||||| |         |||| ||| |||||||||    
T  21791451 aatttattttattttatttcatttcatgtttagaagttcttctgattct-aatttttaataaagtttagctgcacagaaaaattgcatttctattttact 21791353  T
Q  201 ggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    || | |||||||||||||||| ||||||||| ||||||||    
T  21791352 ggagcctattttaaaaagagagtcgagcctcatatttcat 21791313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 10575526 - 10575386
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttc 100  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||| ||| | |||||||| ||| || ||| |||| |||||||||| | |||| ||||    
T  10575526 caatcatttctttttcgcataaaccattcgttttcccctttcccacgacggaggagtgacaatccgaatgacaccgtcaggtaaatttcatctctttttc 10575427  T
Q  101 acttaattttattttattttgtttcatgtttagaagttctt 141  Q
    |||| |||||||||||||| |||||||||||||||||||||    
T  10575426 actttattttattttatttcgtttcatgtttagaagttctt 10575386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 37 - 169
Target Start/End: Original strand, 24449196 - 24449328
Alignment:
Q  37 cttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaag 136  Q
    ||||||| || ||||| |||||||||| |||| |||  ||||||||||| |  ||||||| ||||||||||||||||||||||||||||||||||| |||    
T  24449196 cttttcctacgacgtaggagtgacatttcaaatgacatcgttaggtaaactccacctctcgttcacttaattttattttattttgtttcatgtttaaaag 24449295  T
Q  137 ttcttgtgaatctgattttttaatgaagcttag 169  Q
    ||||| ||| |||||||||||||||||||||||    
T  24449296 ttcttctgattctgattttttaatgaagcttag 24449328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 5545390 - 5545625
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    ||||||||| ||||| |||||||||||||||||||||  ||| ||||||| | ||||||||  | |||||||| ||||||||||||||| || |||  ||    
T  5545390 caatcatttatttttcgcataaaccattcgttttcccccttctcacaacggaggagtgacaaattcaaacgacaccgttaggtaaatttcacgtct--tt 5545487  T
Q  100 cacttaattttatttt-attttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttatttta 198  Q
    ||||||||||| |||| |||| ||||||||||||||||||||| ||| |||  ||||||| |||| |||||||||         || |||||||| |||     
T  5545488 cacttaattttttttttatttcgtttcatgtttagaagttcttctgattctatttttttactgaatcttagctac-aaaaaaaattacgtttttactttt 5545586  T
Q  199 ctggtgtctattttaaaaagagattcgagcctcctattt 237  Q
    |||| | |||||||||||||||| |||||||||||||||    
T  5545587 ctggagcctattttaaaaagagagtcgagcctcctattt 5545625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 55134269 - 55134510
Alignment:
Q  1 caatcatttcttttttg-cataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||||||||||  |||||| |||||||||||||||||||| ||||| || ||| | |  |||||| ||| | ||||| |||||| ||||||||||    
T  55134269 caatcatttctttttttacataaatcattcgttttcccttttcccgcaacggataagtaataaatccaaatgacactgttag-taaattctacctctctt 55134367  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctacnnnnnnnnnttgcgtttttatttta 198  Q
    |||||||||||| || ||||| |||||||||||||||| |||| |||  ||||||||||||| ||||||||||||         ||| ||||||||||||    
T  55134368 tcacttaatttttttgtatttcgtttcatgtttagaagctcttttgatcctgattttttaataaagcttagctacacaaaaaaattgtgtttttatttta 55134467  T
Q  199 ctggtg-tctattttaaaaagagattcgagcctcctatttcat 240  Q
     ||| |  |||||||||| |||||  |||||||| ||||||||    
T  55134468 ttggggacctattttaaatagagagccgagcctcatatttcat 55134510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 22423764 - 22423886
Alignment:
Q  18 cataaaccattcgttttcccttttcccacaacgtatgagtgacattccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttat 117  Q
    |||||| |||||||||| || ||||  || || || ||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| |    
T  22423764 cataaatcattcgtttttccatttcatacgacataggagtgacattccaaacgacaccgttagataaatttcacctctgtttcacttaattttattttgt 22423863  T
Q  118 tttgtttcatgtttagaagttct 140  Q
    ||||||||||||||| |||||||    
T  22423864 tttgtttcatgtttaaaagttct 22423886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 45172648 - 45172514
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctcttt 99  Q
    |||||||||||||||   ||| ||||||||||||||| |||||||||||| || |||||| | |||||| ||| |||||| ||||||| |||||||||||    
T  45172648 caatcatttctttttcatatagaccattcgttttcccctttcccacaacggataagtgacaaatccaaatgacaccgtta-gtaaattctacctctcttt 45172550  T
Q  100 cacttaattttattttattttgtttcatgtttagaag 136  Q
    ||||| ||||| || ||||| ||||||||||||||||    
T  45172549 cactt-atttttttgtatttcgtttcatgtttagaag 45172514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 19661454 - 19661595
Alignment:
Q  14 tttgcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctctttcacttaattttat 112  Q
    ||||||||||||||||||||| || ||| |||||||  | ||||||| | |||||||||| ||||||| ||||||| ||  ||||||||||||||||| |    
T  19661454 tttgcataaaccattcgttttacccttttccacaacaaaggagtgacaaatccaaacgacaccgttagataaatttcac--ctctttcacttaatttt-t 19661550  T
Q  113 tttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||| ||  |||||||||||||||||||| ||| |||| ||||||    
T  19661551 tttaattcctttcatgtttagaagttcttctgattctgttttttt 19661595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 23426169 - 23426014
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| || ||| |||||||  | ||||||||  ||||||| |||||||||| ||||||| ||||||  |    
T  23426169 caatcatttttttcttcgcataaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacaacgccgttagataaatttcacctct--t 23426072  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||||| ||||| ||  |||||||||||||||||||| ||| ||| |||||||    
T  23426071 tcacttaatttt-ttttaattcctttcatgtttagaagttcttctgattctaatttttt 23426014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 173
Target Start/End: Complemental strand, 26329032 - 26328860
Alignment:
Q  3 atcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttca 101  Q
    ||||||| ||||||| |||||||||| |||| |||||| ||||||||| | || ||| |  | |||||||| |  |||||||||||| |||||||||| |    
T  26329032 atcatttattttttggataaaccatttgtttccccttt-cccacaacggaggaatgataaattcaaacgacacttttaggtaaatttcacctctctttta 26328934  T
Q  102 cttaatt-ttattttattttgtttcatgtttagaagttcttgtgaatctga-ttttttaatgaagcttagctac 173  Q
    ||||||| || ||||||||  |||||||||||||| ||||| | | ||||| ||||||||||||| ||||||||    
T  26328933 cttaattctttttttatttcttttcatgtttagaaattcttctaattctgatttttttaatgaagtttagctac 26328860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 41038311 - 41038465
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| || ||| |||||||  | ||||||||  |||||||||| ||||||| ||||||| ||||||  |    
T  41038311 caatcatttttttcttcgcataaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacgacaccgttagataaatttcacctct--t 41038408  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    ||||||||||||  |||| ||  |||||||||||||||||||| ||| | |||||||||    
T  41038409 tcacttaatttt--tttaattcctttcatgtttagaagttcttctgattttgatttttt 41038465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 11681726 - 11681505
Alignment:
Q  19 ataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttat 117  Q
    ||||||||| |||||| || ||| |||||||  ||||||||||  ||||||| || ||||||| ||||||| ||||||  ||||||||||||| |||||     
T  11681726 ataaaccatccgttttacccttttccacaacagatgagtgacaaatccaaacaacaccgttagataaatttcacctct--ttcacttaatttttttttaa 11681629  T
Q  118 tttgtttcatgtttagaagttcttgtgaatctgatt--ttttaatgaagcttagctacnnnnnnnnnttgcgtttttattttact-ggtgtctattttaa 214  Q
    ||  |||||||||||||| || || ||| |||||||  ||||||||||  ||||||||         ||  | |||||||||||| || | |||||||||    
T  11681628 ttcctttcatgtttagaactttttctgattctgattttttttaatgaaatttagctacacaaaaaagttatg-ttttattttactaggggcctattttaa 11681530  T
Q  215 aaagagattcgagcctcctatttca 239  Q
    ||||||| |||||||||||||||||    
T  11681529 aaagagagtcgagcctcctatttca 11681505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 11690005 - 11689784
Alignment:
Q  19 ataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttat 117  Q
    ||||||||| |||||| || ||| |||||||  ||||||||||  ||||||| || ||||||| ||||||| ||||||  ||||||||||||| |||||     
T  11690005 ataaaccatccgttttacccttttccacaacagatgagtgacaaatccaaacaacaccgttagataaatttcacctct--ttcacttaatttttttttaa 11689908  T
Q  118 tttgtttcatgtttagaagttcttgtgaatctgatt--ttttaatgaagcttagctacnnnnnnnnnttgcgtttttattttact-ggtgtctattttaa 214  Q
    ||  |||||||||||||| || || ||| |||||||  ||||||||||  ||||||||         ||  | |||||||||||| || | |||||||||    
T  11689907 ttcctttcatgtttagaactttttctgattctgattttttttaatgaaatttagctacacaaaaaagttatg-ttttattttactaggggcctattttaa 11689809  T
Q  215 aaagagattcgagcctcctatttca 239  Q
    ||||||| |||||||||||||||||    
T  11689808 aaagagagtcgagcctcctatttca 11689784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 34982285 - 34982457
Alignment:
Q  1 caatcatttcttttttgcataaaccattcgttttcccttttcccacaacgtatgagtgaca--ttccaaacgacgccgttaggtaaattttacctctctt 98  Q
    |||| ||||||||||   ||||| |||| |||||||| |||||||||||  || | |||||  |  |||||||| ||||||| |||||| ||||||||||    
T  34982285 caattatttctttttcatataaatcatttgttttcccctttcccacaacagataaatgacaaatctcaaacgaccccgttag-taaattctacctctctt 34982383  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac 173  Q
    | |||||||||| || ||||| |||| |||||||||| ||||| ||| ||||| |||||||| ||||||| ||||    
T  34982384 ttacttaatttttttgtatttcgttttatgtttagaatttcttctgattctga-tttttaataaagcttaactac 34982457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 53011773 - 53011931
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || ||||||||||||| |||| || ||| |||||||  | ||||||||  |||||||||| ||||||| ||||||| ||||||  |    
T  53011773 caatcatttttttcttcgcataaaccattcattttacccttttccacaacagaggagtgacaaatccaaacgacaccgttagataaatttcacctct--t 53011870  T
Q  99 tcacttaattttattttat--tttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||||| |||| |  ||  |||||||||||||||||||| ||| |||||||||||    
T  53011871 tcacttaatttttttttttaattcctttcatgtttagaagttcttctgattctgatttttt 53011931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 32130793 - 32130638
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| || ||| |||||||  | ||||||||  | |||||||| |  |||| ||||||| |  ||||||    
T  32130793 caatcatttttttcttcgcataaaccattcgttttacccttttccacaacagaggagtgacaaattcaaacgacacaattagataaatttca--tctctt 32130696  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||||| ||||| ||  |||||||||||||||||||| ||| |||||||||||    
T  32130695 tcacttaatttt-ttttaattcctttcatgtttagaagttcttctgattctgatttttt 32130638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 157
Target Start/End: Original strand, 27632523 - 27632614
Alignment:
Q  63 tccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    ||||||| || ||||||| ||||||| ||||||  ||||||||||||| ||||| ||  |||||||||||||||||||| ||| |||||||||||    
T  27632523 tccaaacaacaccgttagataaatttcacctct--ttcacttaatttt-ttttaattcctttcatgtttagaagttcttctgattctgatttttt 27632614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 28463591 - 28463436
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| || ||| ||||||   | ||||||||  | |||||||| ||||||| ||||||| ||||||  |    
T  28463591 caatcatttttttcttcgcataaaccattcgttttgcccttttccacaatagaggagtgacaaattcaaacgacaccgttagataaatttcacctct--t 28463494  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||||| ||||| ||  ||| |||||||||| ||||| ||| |||||||||||    
T  28463493 tcacttaatttt-ttttaattcctttgatgtttagaacttcttctgattctgatttttt 28463436  T

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Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 173
Target Start/End: Complemental strand, 16887943 - 16887813
Alignment:
Q  43 ccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttctt 141  Q
    |||||||  ||||||||||  |||||||||| ||||||| ||||||| ||||||  ||||||||||||| ||||| ||  |||||| |||||||||| ||    
T  16887943 ccacaacagatgagtgacaaatccaaacgacaccgttagataaatttcacctct--ttcacttaatttt-ttttaattcctttcatatttagaagttatt 16887847  T
Q  142 gtgaatctgatttttt--aatgaagcttagctac 173  Q
     ||| | |||||||||  ||||||| ||||||||    
T  16887846 ctgattatgattttttttaatgaagtttagctac 16887813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 29221624 - 29221469
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| || ||| |||||||  | ||||||| | |  ||||||| ||||| | | ||||| ||  |||||    
T  29221624 caatcatttttttcttcgcataaaccattcgttttacccttttccacaacagaggagtgacaaatttaaacgacaccgttggattaatttcac--ctctt 29221527  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    |||||||||||| ||||| ||  |||||| ||||||||||||| ||| |||||||||||    
T  29221526 tcacttaatttt-ttttaattcctttcatatttagaagttcttctgattctgatttttt 29221469  T

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Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 24449347 - 24449402
Alignment:
Q  185 gcgtttttattttactggtgtctattttaaaaagagattcgagcctcctatttcat 240  Q
    |||||||||||||||| | |||||||||||||| |||  ||| |||||||||||||    
T  24449347 gcgtttttattttactcgagtctattttaaaaatagaaccgaacctcctatttcat 24449402  T

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Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 23256847 - 23256897
Alignment:
Q  189 ttttattttactggtgtctattttaaaaagagattcgagcctcctatttca 239  Q
    |||||||||||| | | ||||||||||||||||  ||||||||||||||||    
T  23256847 ttttattttactagggcctattttaaaaagagagccgagcctcctatttca 23256897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 44478118 - 44478256
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||||||| ||||||||| || ||| |||||||  | ||||||||  | |||||||| ||||||| ||||||| ||||||  ||||||||||||| ||||    
T  44478118 gcataaactattcgttttacccttttccacaacagaggagtgacaaattcaaacgacaccgttagataaatttcacctct--ttcacttaatttt-tttt 44478214  T
Q  116 attttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    | ||  | | |||||||||| ||||| ||| || ||||||||    
T  44478215 aattcctcttatgtttagaacttcttctgactcggatttttt 44478256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 51066427 - 51066314
Alignment:
Q  1 caatcatttctttttt--gcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctct 97  Q
    ||||||||| ||||||  |||||||||||| ||||||||  |||||| |||| | ||||||| | |||||| ||| | ||||||||||||| ||  ||||    
T  51066427 caatcattttttttttccgcataaaccatttgttttccc--ttcccaaaacgaaggagtgacaaatccaaatgacactgttaggtaaatttcac--ctct 51066332  T
Q  98 ttcacttaattttatttt 115  Q
    |||||||| ||| |||||    
T  51066331 ttcacttattttaatttt 51066314  T

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Target: scaffold0564 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 1122 - 1278
Alignment:
Q  1 caatcatttctttttt-gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctt 98  Q
    ||||||||| ||| || |||||||||||||||||| || ||| ||||||| || ||||||||  |||||||||| ||||||| ||||||| ||||||  |    
T  1122 caatcatttttttcttcgcataaaccattcgttttacccttttccacaacataggagtgacaaatccaaacgacaccgttagataaatttcacctct--t 1219  T
Q  99 tcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    ||| |||||||| ||||| ||  |||||||||||||| ||||| ||| |||||||||||    
T  1220 tcatttaatttttttttaattcctttcatgtttagaacttcttctgattctgatttttt 1278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 22791 - 22653
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgacat-tccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||||||||||||||||| || ||| ||||||| || ||||||||  | |||||||| ||||||| ||||||| ||||||  ||||||||||||| ||||    
T  22791 gcataaaccattcgttttacccttttccacaacataggagtgacaaattcaaacgacaccgttagataaatttcacctct--ttcacttaatttt-tttt 22695  T
Q  116 attttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    | ||  |||||||||||||||||||| ||| |||||||||||    
T  22694 aattcctttcatgtttagaagttcttctgattctgatttttt 22653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 240
Target Start/End: Original strand, 99083 - 99219
Alignment:
Q  107 ttttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagcttagctac--nnnnnnnnnttgcgtttttattttactg-gt 203  Q
    |||| ||| |||| ||||||||||||||||||||| ||| ||||||||||||||||||  |||||||           |||| |||||||||||||| |     
T  99083 ttttttttaatttcgtttcatgtttagaagttcttctgattctgattttttaatgaaggctagctacaaaaaaaaaaattgcatttttattttactgagg 99182  T
Q  204 gtctattttaaaaagagattcgagcctcctatttcat 240  Q
    | |||||||||||||||||| ||||||||||||||||    
T  99183 gcctattttaaaaagagatttgagcctcctatttcat 99219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 16788 - 16926
Alignment:
Q  17 gcataaaccattcgttttcccttttcccacaacgtatgagtgac-attccaaacgacgccgttaggtaaattttacctctctttcacttaattttatttt 115  Q
    |||||||||||||||||| || ||| |||||||  | |||| || | |||||||||| ||||||| ||||||| ||  ||||||||||||||||| ||||    
T  16788 gcataaaccattcgttttacccttttccacaacagaggagtaacaaatccaaacgacaccgttagataaatttcac--ctctttcacttaatttt-tttt 16884  T
Q  116 attttgtttcatgtttagaagttcttgtgaatctgatttttt 157  Q
    | ||  |||||||||||||| ||||| ||| ||| |||||||    
T  16885 aattcctttcatgtttagaacttcttctgattctaatttttt 16926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 45971 - 45939
Alignment:
Q  207 tattttaaaaagagattcgagcctcctatttca 239  Q
    ||||||||||||||| |||||||||||||||||    
T  45971 tattttaaaaagagagtcgagcctcctatttca 45939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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