View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4530_low_11 (Length: 280)
Name: NF4530_low_11
Description: NF4530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4530_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 1739259 - 1739519
Alignment:
| Q |
1 |
tgtttttattttcttgagaaatcaatatnnnnnnngaattgacaaatcaattacatgtgtcataaaagaactgagaaatcaagaaaaccaatannnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1739259 |
tgtttttattttcttgagaaatcaatataaaaaaagaattgacaaatcaattacatgtgtcataaaagaactgagaaatcaagaaaaccaatattttttt |
1739358 |
T |
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| Q |
101 |
actctttatggagttatttgtatttttcagaatatgtttagatatatagatacataacctttttgctaagaactctatgacagagactgtctgtggaatg |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1739359 |
actctttatggagttatttgtattttttagaatatgtttagatatatagatacataacctttttgctaagaactctatgacagagactgtctgtggaatg |
1739458 |
T |
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| Q |
201 |
tatgaatcatcccattctgtatatccatctcttgtcccactatgctcaaaaccattttgag |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1739459 |
tatgaatcatcccattctgtatatccatctcttgtcccactatgctcaaaaccattttgag |
1739519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 137 - 261
Target Start/End: Original strand, 1717925 - 1718049
Alignment:
| Q |
137 |
tttagatatatagatacataacctttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctgtatatccatctcttgtc |
236 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||| |
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| T |
1717925 |
tttagatatatagatacaaaacctttttgctaagaattctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgtc |
1718024 |
T |
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| Q |
237 |
ccactatgctcaaaaccattttgag |
261 |
Q |
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| T |
1718025 |
ccactatgctcaaaaccattttgag |
1718049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 156 - 261
Target Start/End: Original strand, 1754878 - 1754983
Alignment:
| Q |
156 |
aacctttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctgtatatccatctcttgtcccactatgctcaaaaccat |
255 |
Q |
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||||||||||||| ||| |||||||||||||||||||| || |||||||| ||| |||||||| || ||||||||||||| ||||| || ||| ||||| |
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| T |
1754878 |
aacctttttgctaggaaatctatgacagagactgtctgaggtatgtatgattcaccccattctataaatccatctcttgttccactgtgatcattaccat |
1754977 |
T |
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| Q |
256 |
tttgag |
261 |
Q |
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|||||| |
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| T |
1754978 |
tttgag |
1754983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 261
Target Start/End: Original strand, 1749254 - 1749368
Alignment:
| Q |
147 |
tagatacataacctttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctgtatatccatctcttgtcccactatgct |
246 |
Q |
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|||||||| ||||||| ||||||||| || || |||| |||||||| || ||||| |||||| ||||||||||||||||||||||||| |||||||| | |
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| T |
1749254 |
tagatacaaaacctttgtgctaagaaatcaatcacagctactgtctgaggtatgtaagaatcaccccattctgtatatccatctcttgttccactatgtt |
1749353 |
T |
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| Q |
247 |
caaaaccattttgag |
261 |
Q |
| |
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|| |||||||||| |
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| T |
1749354 |
cattgccattttgag |
1749368 |
T |
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