View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4530_low_17 (Length: 226)
Name: NF4530_low_17
Description: NF4530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4530_low_17 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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| [»] scaffold1630 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 26948719 - 26948924
Alignment:
| Q |
1 |
cctactcaatatttgctcataagcttctagtgagcctattaattctgtcactgacaaagtagacaaatatttggtttgcacaatcgtggtaacaattgca |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||| ||||||| |||||||||||| |
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| T |
26948719 |
cctactcaatctttgctcataagcttctagtgagcctattaattctgtcactaacaaagtagacagatctttggtttgctcaatcgtagtaacaattgca |
26948818 |
T |
|
| Q |
101 |
tcatatctacgaggaatataaattcgaatttcctcaacaattcttttgtcgagaatactatccccgtaagttttcatttgactcactagttcttttatct |
200 |
Q |
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||||| ||||||||||| ||||| |||||| ||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
26948819 |
tcatacttacgaggaatagaaattagaattttctcaacaattcttttgtcgagaatattatccctgtatgttttcatttgactcactagttcttttatct |
26948918 |
T |
|
| Q |
201 |
tggtat |
206 |
Q |
| |
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|||||| |
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| T |
26948919 |
tggtat |
26948924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 2754 - 2637
Alignment:
| Q |
1 |
cctactcaatatttgctcataagcttctagtgagcctattaattctgtcactgacaaagtagacaaatatttggtttgcacaatcgtggtaacaattgca |
100 |
Q |
| |
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|||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||| || |||| || | |||||||||| |
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| T |
2754 |
cctactcaatattttctcataagcttctaatgagcctattaattatgtcactgacaaagtagacaaatcttcggttggctcaattgtagcaacaattgca |
2655 |
T |
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| Q |
101 |
tcatatctacgaggaata |
118 |
Q |
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||||| || |||||||| |
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| T |
2654 |
tcatacttatgaggaata |
2637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 4300 - 4183
Alignment:
| Q |
1 |
cctactcaatatttgctcataagcttctagtgagcctattaattctgtcactgacaaagtagacaaatatttggtttgcacaatcgtggtaacaattgca |
100 |
Q |
| |
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|||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||| || |||| || | |||||||||| |
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| T |
4300 |
cctactcaatattttctcataagcttctaatgagcctattaattatgtcactgacaaagtagacaaatcttcggttggctcaattgtagcaacaattgca |
4201 |
T |
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| Q |
101 |
tcatatctacgaggaata |
118 |
Q |
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||||| || |||||||| |
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| T |
4200 |
tcatacttatgaggaata |
4183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1630 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold1630
Description:
Target: scaffold1630; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 969 - 813
Alignment:
| Q |
1 |
cctactcaatatttgctcataagcttctagtgagcctattaattctgtcactgacaaagtagacaaatatttggtttgcacaatcgtggtaacaattgca |
100 |
Q |
| |
|
|||||||||| ||||||||||| |||||| |||||||||| ||||| ||| ||||||||||| | || |||||||| | ||||| | | ||| |||||| |
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| T |
969 |
cctactcaatctttgctcataaacttctactgagcctattgattctatcaaggacaaagtagatagatctttggttttctcaatcatagaaacgattgca |
870 |
T |
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| Q |
101 |
tcatatctacgaggaatataaattcgaatttcctcaacaattcttttgtcgagaata |
157 |
Q |
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||||| || ||||||| ||||| |||||| ||||||||||||||||||||||||| |
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| T |
869 |
tcatacttataaggaatagaaattagaattttctcaacaattcttttgtcgagaata |
813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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