View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4530_low_19 (Length: 203)
Name: NF4530_low_19
Description: NF4530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4530_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 8e-94; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 7068013 - 7067840
Alignment:
| Q |
14 |
agatgaacaaactacaatatctggatatctatactaaaggatattatgtgtttttccaaattcctcgaagcttgaatcttcctcaagggcttaaatcttt |
113 |
Q |
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| T |
7068013 |
agatgaacaaactacaatatctggatatctatactaaaggatattatgtgtttttccaaattcctcgaagcttgaatcttcctcaagggcttaaatcttt |
7067914 |
T |
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| Q |
114 |
gccagatgaactcagatatcttcgttgggcatattaccccttagagtctttaccatctaagtttaatggggaga |
187 |
Q |
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| T |
7067913 |
gccagatgaactcagatatcttcgttgggcatattaccccttagagtctttaccatctaagtttaatggggaga |
7067840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 7031762 - 7031849
Alignment:
| Q |
90 |
tcttcctcaagggcttaaatctttgccagatgaactcagatatcttcgttgggcatattaccccttagagtctttaccatctaagttt |
177 |
Q |
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| T |
7031762 |
tcttcctcgagggcttgaatttttgcctaacgaactgagatatcttcgttgggagtattaccctttggaatccttaccatccaagttt |
7031849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 7037471 - 7037558
Alignment:
| Q |
90 |
tcttcctcaagggcttaaatctttgccagatgaactcagatatcttcgttgggcatattaccccttagagtctttaccatctaagttt |
177 |
Q |
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| T |
7037471 |
tcttcctcgagggcttgaatttttgcctaacgaactgagatatcttcgttgggagtattaccctttggaatccttaccatccaagttt |
7037558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 7074509 - 7074447
Alignment:
| Q |
90 |
tcttcctcaagggcttaaatctttgccagatgaactcagatatcttcgttgggcatattaccc |
152 |
Q |
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| T |
7074509 |
tcttcctcaagggctcgaatccttgcctaatgaactgagatatcttcgttgggagtattaccc |
7074447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 4217620 - 4217558
Alignment:
| Q |
90 |
tcttcctcaagggcttaaatctttgccagatgaactcagatatcttcgttgggcatattaccc |
152 |
Q |
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| T |
4217620 |
tcttcctcgagggcttcaatcttttccaaatgatctaagatatcttcgttgggtatgttaccc |
4217558 |
T |
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