View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4530_low_6 (Length: 345)
Name: NF4530_low_6
Description: NF4530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4530_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 33017075 - 33016759
Alignment:
| Q |
17 |
agttctgaagcttgacataatcaaaagcttttgatcaagttgatgggcgatacctctcagatgttatgtcaaaggcaggcttctccaatcaatgaataaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33017075 |
agttctgaagcttgacataatcaaaagcttttgatcaagttgatgggcgatacctctcagatgttatgtcaaaggcaggcttctccaatcaatgaataaa |
33016976 |
T |
|
| Q |
117 |
tggatttgtttggttatgtgtgacctctgtcaactacaacgtctgcctcaataatgaagcagttggtccgattttccaaatgaagtgccttacctctata |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33016975 |
tggatttgtttggttatgtgtgacctctgtcaactacaacgtctgcctcaataatgaagcagttggtccgattttccaaatgaagtgccttacctctata |
33016876 |
T |
|
| Q |
217 |
tcatatgtgcaaagaacatctctgtcttatcaagcatggagtttcacaaggagctattcataggtccaaaatccatcgaggtacgccttctattagccac |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33016875 |
tcatatgtgcaaagaacatctctgtcttatcaagcatagagtttcacaaggagctattcataggtccaaaatccatcgaggtacgccttctattagccac |
33016776 |
T |
|
| Q |
317 |
cttttttcgatgatgat |
333 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
33016775 |
cttttttcgatgatgat |
33016759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University