View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4530_low_7 (Length: 338)
Name: NF4530_low_7
Description: NF4530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4530_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 16616790 - 16617077
Alignment:
| Q |
1 |
tcaaaatggtcaatgcaaataattcaagacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggttttgattgatagacactgc |
100 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16616790 |
tcaaaatggtcaatgcaaataattcaaaacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggttttgattgatagacactgc |
16616889 |
T |
|
| Q |
101 |
attgtacataattttcacaagtaatccttcattttgttcggcagctactccaactaaattttcaacaatttccttttcagcgataaccacctcactgtcg |
200 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||| |
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| T |
16616890 |
attgtacataattttcacaagtaatccttcactttgttcggcagctactccaactacactttcaacaatttcctttttagcgataaccacctcactgtcg |
16616989 |
T |
|
| Q |
201 |
aacaatcgactgttaatgtcttttatttctgctaaaatattctgattttcctgctacagttaacaatgtgacagtaaaattcttgtaa |
288 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16616990 |
aacaatcgattgttaatgtcttttatttctgctaaaatattctgattttcctgctacagttaacaatgtgacagtaaaattcttgtaa |
16617077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 16628490 - 16628770
Alignment:
| Q |
1 |
tcaaaatggtcaatgcaaataattcaagacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggttttgattgatagacactgc |
100 |
Q |
| |
|
|||||||| |||| ||||||||||| | ||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| | |||||| |
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|
| T |
16628490 |
tcaaaatgatcaacgcaaataattccaaacagaatataaaaacatttacctttttatcggaagtgaagtgagatacaaggttttgattgatggtcactgc |
16628589 |
T |
|
| Q |
101 |
attgtacataattttcacaagtaatccttcattttgttcggcagctactccaactaaattttcaacaatttccttttcagcgataaccacctcactgtcg |
200 |
Q |
| |
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||||||||| ||||| |||||||||||| || |||||||| ||||| ||| ||||| |||||||| ||||||||||| ||||||||||||||| ||| |
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| T |
16628590 |
attgtacatgattttaacaagtaatcctccaacttgttcggaagctaatcctactaacctttcaacattttccttttcaccgataaccacctcacagtca |
16628689 |
T |
|
| Q |
201 |
aacaatcgactgttaatgtcttttatttctgctaaaatattctgattttcctgctacagttaacaatgtgacagtaaaatt |
281 |
Q |
| |
|
||||||||| | || |||||||||||||||||||||| ||||||| |||||||||| ||| |||||||||||| ||||||| |
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|
| T |
16628690 |
aacaatcgattatttatgtcttttatttctgctaaaacattctgaatttcctgctagagtcaacaatgtgacaataaaatt |
16628770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 16637371 - 16637651
Alignment:
| Q |
1 |
tcaaaatggtcaatgcaaataattcaagacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggttttgattgatagacactgc |
100 |
Q |
| |
|
|||||||| |||| ||||||||||| | ||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| | |||||| |
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|
| T |
16637371 |
tcaaaatgatcaacgcaaataattccaaacagaatataaaaacatttacctttttatcggaagtgaagtgagatacaaggttttgattgatggtcactgc |
16637470 |
T |
|
| Q |
101 |
attgtacataattttcacaagtaatccttcattttgttcggcagctactccaactaaattttcaacaatttccttttcagcgataaccacctcactgtcg |
200 |
Q |
| |
|
||||||||| ||||| |||||||||||| || |||||||| ||||| ||| ||||| |||||||| ||||||||||| ||||||||||||||| ||| |
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| T |
16637471 |
attgtacatgattttaacaagtaatcctccaacttgttcggaagctaatcctactaacctttcaacattttccttttcaccgataaccacctcacagtca |
16637570 |
T |
|
| Q |
201 |
aacaatcgactgttaatgtcttttatttctgctaaaatattctgattttcctgctacagttaacaatgtgacagtaaaatt |
281 |
Q |
| |
|
||||||||| | || |||||||||||||||||||||| ||||||| |||||||||| ||| |||||||||||| ||||||| |
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|
| T |
16637571 |
aacaatcgattatttatgtcttttatttctgctaaaacattctgaatttcctgctagagtcaacaatgtgacaataaaatt |
16637651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 16792429 - 16792711
Alignment:
| Q |
1 |
tcaaaatggtcaatgcaaataattcaagacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggttttgattgatagacactgc |
100 |
Q |
| |
|
||||||| |||||| ||||||| || ||| ||||||||||||||||| |||||||||||| | |||||||||||| || |||||||||||| || ||| |
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|
| T |
16792429 |
tcaaaataatcaatgtgaataattgaaaacataatataaaatcatttacatttttatcagaaatgaagtgagatacatggctttgattgatagtcattgc |
16792528 |
T |
|
| Q |
101 |
attgtacataattttcacaagtaatccttcattttgttcggcagctactccaactaaattttcaacaatttccttttcagcgataaccacctcactgtcg |
200 |
Q |
| |
|
| ||||||| ||||| |||||||||| |||| |||||||| ||||||||| | | |||| | | ||||||||||| |||||||||||||| |||| |
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|
| T |
16792529 |
aatgtacatgattttaacaagtaatcattcaatttgttcgaaagctactcctagcgcactttc-atattttccttttcaacgataaccacctcattgtca |
16792627 |
T |
|
| Q |
201 |
aacaatcgactgttaatgtcttttatttctgctaaaatattctgattttcctgctacagttaacaatgtgacagtaaaattctt |
284 |
Q |
| |
|
|||||| || |||| |||||| |||| | |||||||| |||||||||||| || || |||||||||||||||| |||| ||||| |
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|
| T |
16792628 |
aacaattgattgtttatgtctattatatttgctaaaagattctgattttcatgttagagttaacaatgtgacattaaagttctt |
16792711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 33 - 284
Target Start/End: Original strand, 16790548 - 16790799
Alignment:
| Q |
33 |
aatataaaatcatttacctttt-tatcagaagtaaagtgagatacaaggttttgattgatagacactgcattgtacataattttcacaagtaatccttca |
131 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| || ||||||||| || |||||||||||| || |||||||||||| ||||| |||||||||| |||| |
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|
| T |
16790548 |
aatataaaatcatttacattttttatcagaagtgaaatgagatacatggctttgattgatagtcattgcattgtacatgattttaacaagtaatcattca |
16790647 |
T |
|
| Q |
132 |
ttttgttcggcagctactccaactaaattttcaacaatttccttttcagcgataaccacctcactgtcgaacaatcgactgttaatgtcttttatttctg |
231 |
Q |
| |
|
|||||||| ||||||||| | | |||| | | ||||| ||||| |||||||||||||| |||| |||||| || |||| |||||| |||||| || |
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|
| T |
16790648 |
atttgttcgaaagctactcctagcgcactttc-atattttccctttcaacgataaccacctcattgtcaaacaattgattgtttatgtctattatttttg |
16790746 |
T |
|
| Q |
232 |
ctaaaatattctgattttcctgctacagttaacaatgtgacagtaaaattctt |
284 |
Q |
| |
|
|||||| ||||||||||| || || ||||||||||||||||| ||| ||||| |
|
|
| T |
16790747 |
ctaaaagattctgattttaatgatagagttaacaatgtgacaggaaagttctt |
16790799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 16790285 - 16790077
Alignment:
| Q |
1 |
tcaaaatggtcaatgcaaataattcaagacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggttttgattgatagacactgc |
100 |
Q |
| |
|
||||||| |||||||||||| || || | ||||||||||| ||||||||||||||||| |||| ||||||||||||||||| |||| ||||| |||||| |
|
|
| T |
16790285 |
tcaaaatattcaatgcaaatagttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaaggttctgatcgatagtcactgc |
16790186 |
T |
|
| Q |
101 |
attgtacataattttcacaagtaatccttcattttgttcggcagctactccaactaaattttcaacaatttccttttcagcgataaccacctcactgtcg |
200 |
Q |
| |
|
||||||||| ||||| |||| | |||||||| | ||||||| |||||||| | | |||||||| ||||||||||||| ||||||| |||| ||| |
|
|
| T |
16790185 |
attgtacatgattttaacaattgatccttcactatgttcggtcgctactcctagcgcactttcaacattttccttttcagcaataaccatctcatagtca |
16790086 |
T |
|
| Q |
201 |
aacaatcga |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
16790085 |
aacaatcga |
16790077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 16791691 - 16791450
Alignment:
| Q |
1 |
tcaaaatggtcaatgcaaataattcaagacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggttttgattgatagacactgc |
100 |
Q |
| |
|
||||||| |||||||||||| || || | |||||||||||||| |||||||||||||| |||| |||||||||||| |||| |||||||||| |||||| |
|
|
| T |
16791691 |
tcaaaataatcaatgcaaatagttgaaaatagaatataaaatcacttacctttttatcataagtgaagtgagatacatggttctgattgatagtcactgc |
16791592 |
T |
|
| Q |
101 |
attgtacataattttcacaagtaatccttcattttgttcggcagctactccaactaaattttcaacaatttccttttcagcgataaccacctcactgtcg |
200 |
Q |
| |
|
||||||||| ||||| | | || | |||||| |||||||| |||||||| | | | |||||| | ||||||||||||||||||||| |||| |||| |
|
|
| T |
16791591 |
attgtacatgattttaatacgtgacccttcactttgttcgatggctactcctaatgcactttcaatattttccttttcagcgataaccatctcatagtcg |
16791492 |
T |
|
| Q |
201 |
aacaatcgactgttaatgtcttttatttctgctaaaatattct |
243 |
Q |
| |
|
| |||||| |||| |||| ||||||||| |||||| ||||| |
|
|
| T |
16791491 |
-agaatcgattgtttatgttttttatttccactaaaagattct |
16791450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 16617106 - 16617153
Alignment:
| Q |
291 |
ttctcgtagatttcaatggtagacaaaaaggaggaggaagattaccac |
338 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16617106 |
ttctagtagatttcaatggtagaaaaaaaggaggaggaagattaccac |
16617153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 160 - 288
Target Start/End: Original strand, 38877455 - 38877583
Alignment:
| Q |
160 |
tttcaacaatttccttttcagcgataaccacctcactgtcgaacaatcgactgttaatgtcttttatttctgctaaaatattctgattttcctgctacag |
259 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||| |||||||||| || |||| ||||||||||||||||||||||| |||||||||| |||||| || |
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|
| T |
38877455 |
tttcaacattttcctgttcagcgataaccacctcacagtcgaacaattgattgtttatgtcttttatttctgctaaaatgttctgatttttctgctagag |
38877554 |
T |
|
| Q |
260 |
ttaacaatgtgacagtaaaattcttgtaa |
288 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
38877555 |
ttaacaatgtgtcagtaaaattcttgtaa |
38877583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 38877337 - 38877446
Alignment:
| Q |
18 |
aataattcaagacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggttttgattgatagacactgcattgtacataattttca |
117 |
Q |
| |
|
|||| ||||| ||||||||||||| |||| |||||||||||| | || |||||||||||||||| ||||| |||| ||||||||||||||| ||||| | |
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|
| T |
38877337 |
aatagttcaaaacagaatataaaaccattcacctttttatcatatgtcaagtgagatacaaggtcctgattcatagtcactgcattgtacatgattttaa |
38877436 |
T |
|
| Q |
118 |
caagtaatcc |
127 |
Q |
| |
|
||||||||| |
|
|
| T |
38877437 |
gaagtaatcc |
38877446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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