View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4530_low_9 (Length: 322)
Name: NF4530_low_9
Description: NF4530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4530_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 23 - 313
Target Start/End: Complemental strand, 15637219 - 15636929
Alignment:
| Q |
23 |
tagagccaagaaattcataggagagagaagttgcaggcattgtgagaccaaagagactactcaatggagggaaggtcctttggggaagaatactttgtgc |
122 |
Q |
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| T |
15637219 |
tagagccaagaaattcataggagatagaagttgcagccattgtgagaccaaagagactactcaatggagggaaggtcctttggggaagaatagtttgtgc |
15637120 |
T |
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| Q |
123 |
aatgcatgtggattacgatacaagttaaatggattggttaaagggtatagacctaaggcaagtccagcttttgatatcagaaatcattcaaatttacaca |
222 |
Q |
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| T |
15637119 |
aatgcatgtggattacgatacaagttaaatggattggttaaagggtatagacctaaggcaagtccagctttcgatatcagaaatcattcaaatttacaca |
15637020 |
T |
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| Q |
223 |
agaaggcgatgcgaaaggaatgataaacgatcgtttacannnnnnnnnnnnatagatgtttcattgttatttttcacaagatggtgatgat |
313 |
Q |
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| T |
15637019 |
agaaggcgatgcgaaaggaatgataaacgatcgtttagattttttgcttttacagatgtttcattgttatttttcacaagatggtgatgat |
15636929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 15587313 - 15587077
Alignment:
| Q |
23 |
tagagccaagaaattcataggagagagaagttgcaggcattgtgagaccaaagagactactcaatggagggaaggtcctttggggaagaatactttgtgc |
122 |
Q |
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| T |
15587313 |
tagagccaagaaattcataggagagagaagttgcagccattgtgagacgaaagagactactcaatggagggaaggtcctttggggaaaaatagtttgtgc |
15587214 |
T |
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| Q |
123 |
aatgcatgtggattacgatacaagttaaatggattggttaaagggtatagacctaaggcaagtccagcttttgatatcagaaatcattcaaatttacaca |
222 |
Q |
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| T |
15587213 |
aatgcatgtggattacgatacaagttaaatggattggttaaagggtatagacctaaggcaagtccagcttttgatatcagaaatcattcaaatttacaca |
15587114 |
T |
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| Q |
223 |
agaaggcgatgcgaaaggaatgataaacgatcgttta |
259 |
Q |
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| T |
15587113 |
agaaggtgatgggaaaggaatgataaacgatcgttta |
15587077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 44 - 197
Target Start/End: Complemental strand, 15596244 - 15596088
Alignment:
| Q |
44 |
agagagaagttgcaggcattgtgagaccaaagaga---ctactcaatggagggaaggtcctttggggaagaatactttgtgcaatgcatgtggattacga |
140 |
Q |
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| T |
15596244 |
agagagaagttacagtcattgtgagaccaaagagagtactactcaatggaggtcaggtcctttgggggaaaatactttatgcaatgcatgtggattacga |
15596145 |
T |
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| Q |
141 |
tacaagttaaatggattggttaaagggtatagacctaaggcaagtccagcttttgat |
197 |
Q |
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| T |
15596144 |
tacaagtcaaatagattggttcaagggtatagacctgcggcaagtccatcctttgat |
15596088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 44 - 217
Target Start/End: Complemental strand, 15645864 - 15645691
Alignment:
| Q |
44 |
agagagaagttgcaggcattgtgagaccaaagagactactcaatggagggaaggtcctttggggaagaatactttgtgcaatgcatgtggattacgatac |
143 |
Q |
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| T |
15645864 |
agagagaagttgcagtcattgtgagaccaaatacacaactcaatggagattgggtcctttggggaaaaatactttatgcaatgcatgtggattaagatac |
15645765 |
T |
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| Q |
144 |
aagttaaatggattggttaaagggtatagacctaaggcaagtccagcttttgatatcagaaatcattcaaattt |
217 |
Q |
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| T |
15645764 |
aagtcaaatcgattggttaaagggtatagacctgtggcaagtccatcctttgattttaacaagcattcaaattt |
15645691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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