View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4531-Insertion-1 (Length: 791)
Name: NF4531-Insertion-1
Description: NF4531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4531-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 690; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 8 - 779
Target Start/End: Complemental strand, 832023 - 831240
Alignment:
| Q |
8 |
tataccactattaattctttcggcagatgaaacaagattgtcttgtcccagatcttgctacctatatatagaaccatatacaattctttcctccattgtt |
107 |
Q |
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| T |
832023 |
tataccactattaattctttcggcagatgaaacaagattgtcttgtcccagatcttgctacctatatatagaaccatatacaattctttcctccattgtt |
831924 |
T |
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| Q |
108 |
tttctgtgtttttgtttctccataaattctaaaacgaatttctagggtgtagtatatattgttttttcacttcagttttggttccttgattacttactta |
207 |
Q |
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| T |
831923 |
tttctgtgtttttgtttctccataaattctaaaacgaatttctagggtgtagtatatagtgttttttcacttcagttttggttctttgattacttactta |
831824 |
T |
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| Q |
208 |
taataattgaaatcagcatgcttgaaacaataactttaaaaacctttttctggttgtttgaataacaaaattactttgaagactgtatctcagaaacagt |
307 |
Q |
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| T |
831823 |
taataattgaaatcagcatgcttgaaacaataactttaaaaacctttttctggttgtttgaataacaaaattactttgaaaactgtatctcagaaacagt |
831724 |
T |
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| Q |
308 |
ttagttcttaataagaatagcagttcagattacactaatctaaaacagttcggtttgagaaccaaaaccatggtgcaccaaaccaattacacagttcact |
407 |
Q |
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| T |
831723 |
ttagttcttaataagaatagcagttcagattacactaatctaaaacagttcggtttgagaaccaaaaccatggtgcaccaaaccaattacacagttcact |
831624 |
T |
|
| Q |
408 |
ttggtttggaatcaatcgaaatggctcagttcagtttttctatactattcttacgatccggtttagtttttatcctgaaccaaactgtggacaggcctat |
507 |
Q |
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| T |
831623 |
ttggtttggaatcaatcgaaatggctcagttcagtttttctatactattcttacgatccggtttagtttttatcctgaaccaaactgtgatcaggcctat |
831524 |
T |
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| Q |
508 |
gaccaacagttacaatacctgtttctgtaacttattgttctgtttcaaaattaggaacgtattgatgttatttggacaccgcaaattaatacttgatttc |
607 |
Q |
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| T |
831523 |
gaccaacagttacaatacctgtttctgtaacttattgttctgtttcaaaattagaaacgtattgatgttatttggacaccgcaaattaatacttgatttc |
831424 |
T |
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| Q |
608 |
aattttagggactacaatactctcttgaaacaatttgaagatacnnnnnnngttatcaatagatctctttagactttgtaaattagacacatctaaagag |
707 |
Q |
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| T |
831423 |
aattttagggactacaatactctcttgaaacaatttgaagatactttttttgttatcaatagatctctttagactttgtaaattagacacatctaaagag |
831324 |
T |
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| Q |
708 |
atctgagagagaa------------aaatggaaactgggagaacaactccacataggttaaaggatttgagtcacataagtgac |
779 |
Q |
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| T |
831323 |
atctgagagagaaaaatggacggagaaatggaaactggtagaaccactccacataggttaaaggatttgagtcacataagtgac |
831240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 799357 - 799274
Alignment:
| Q |
23 |
tctttcggcagatgaaacaagattgtcttgtcccagatcttgctacctatatatagaaccatatacaattctttcctccattgttttt |
110 |
Q |
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||||||||||||||||||| ||| |||| || || ||||||| |||||||| | ||| ||| |||||||||||||||||||||| |
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| T |
799357 |
tctttcggcagatgaaacatgatggtctagttccggatcttgttacctata----gcaccgtatgtaattctttcctccattgttttt |
799274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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