View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4531-Insertion-4 (Length: 312)
Name: NF4531-Insertion-4
Description: NF4531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4531-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 297
Target Start/End: Original strand, 25564929 - 25565212
Alignment:
| Q |
8 |
agttgatcttgcagaagcatatgttttgagaaaaatgtataaagaaaaattgaaggaaggggaagaagcaaagggacccaagaatagcgcgattggatcg |
107 |
Q |
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| T |
25564929 |
agttgatcttgcagaagcatatgttttgagaaaaatgtataaagaaaaattgaaggaaggggaagaagcaaagggacccaagaatagcgcgattggatcg |
25565028 |
T |
|
| Q |
108 |
aaggacgaaagatcaagtaaatgtttcttttggttttctaagaagttaagaagaacaacacgaattagagatatcaatgagaatgagaaggagcgcaata |
207 |
Q |
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| T |
25565029 |
aaggacgaaagatcaagtaaatgtttcttttggttttctaagaagttaagaagaactacacgaattagagatatc------aatgagaaggagcgcaata |
25565122 |
T |
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| Q |
208 |
aacaggtcttggatccagtttatnnnnnnncatcgatcagatgttgttagagatagctttagctaagctataaagaaattgtactgtatt |
297 |
Q |
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| T |
25565123 |
aacaggtcttggatccaatttataaaaaagcatcgatcagatgttgttagggatagctttagctaagctataaagaaattctattgtatt |
25565212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 8 - 189
Target Start/End: Original strand, 25589180 - 25589361
Alignment:
| Q |
8 |
agttgatcttgcagaagcatatgttttgagaaaaatgtataaagaaaaattgaaggaaggggaagaagcaaagggacccaagaatagcgcgattggatcg |
107 |
Q |
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||||||| |||||||||||| ||| || ||||| |||| |||||||||| |||||||||| ||||||||||||||||||||||||||| ||||| | | |
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| T |
25589180 |
agttgatgttgcagaagcatgtgtgttaagaaagatgtgtaaagaaaaaatgaaggaaggagaagaagcaaagggacccaagaatagcatgattgaagca |
25589279 |
T |
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| Q |
108 |
aaggacgaaagatcaagtaaatgtttcttttggttttctaagaagttaagaagaacaacacgaattagagatatcaatgaga |
189 |
Q |
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||| | ||||||||||| |||||| |||||||||||||||||| || |||||| |||||||||||||| |||||||||| |
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| T |
25589280 |
aagacccaaagatcaagtggatgtttgttttggttttctaagaagctaggaagaattacacgaattagagacatcaatgaga |
25589361 |
T |
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