View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4531-Insertion-5 (Length: 116)
Name: NF4531-Insertion-5
Description: NF4531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4531-Insertion-5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 105; Significance: 6e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 6e-53
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 54235515 - 54235623
Alignment:
| Q |
8 |
ccgcctacgtctctcctcaaccacaaacaacacttctccagctgcacctccagctgctgccaacaaaggcgtcaagaagaaggttctccgttctcttcca |
107 |
Q |
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| T |
54235515 |
ccgcctacgtctctcctcaaccacaaacaacacttctccagctgcacctccagctgccgccaacaaaggcgtcaagaagaaggttctccgttctcttcca |
54235614 |
T |
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| Q |
108 |
aagctcaca |
116 |
Q |
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| T |
54235615 |
aagctcaca |
54235623 |
T |
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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 38241832 - 38241870
Alignment:
| Q |
74 |
aggcgtcaagaagaaggttctccgttctcttccaaagct |
112 |
Q |
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| T |
38241832 |
aggcgtcaagaagaaggttctcctctctcttccaaagct |
38241870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 7311063 - 7311101
Alignment:
| Q |
74 |
aggcgtcaagaagaaggttctccgttctcttccaaagct |
112 |
Q |
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| T |
7311063 |
aggcgtcaagaagaaggttctcctctctcttccaaagct |
7311101 |
T |
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