View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4531_high_8 (Length: 238)
Name: NF4531_high_8
Description: NF4531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4531_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 39272122 - 39272072
Alignment:
| Q |
172 |
tggttgcttttctaagagatagtgcagctcctaaggaaactagaaaacacc |
222 |
Q |
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| T |
39272122 |
tggttgcttttctaagagatagtacagctcctaaggaaactagaaaacacc |
39272072 |
T |
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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 39272307 - 39272253
Alignment:
| Q |
2 |
atatatacacggaaaagaggcaaggggtggagaaggagatgagctagcaaagcaa |
56 |
Q |
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| T |
39272307 |
atatatacacggaaaagaggcaaggggcggagaaggagatgaactagcaaagcaa |
39272253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 39272233 - 39272197
Alignment:
| Q |
123 |
ccctataatcgtagaggtagccaccattgaccaaact |
159 |
Q |
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| T |
39272233 |
ccctataatcgtagaggtagccaccattgaccaaact |
39272197 |
T |
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