View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4531_low_1 (Length: 955)
Name: NF4531_low_1
Description: NF4531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4531_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 686; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 19 - 728
Target Start/End: Original strand, 16625197 - 16625906
Alignment:
| Q |
19 |
gctacatctcttctaactttttcaaccaaaccagctacaatcattgatataatggagaacaccatgccaattccaattctttggaggagagtgattcctc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16625197 |
gctacatctcttctaactttttcaaccaaaccagctacaatcattgatataatggagaacaccatgccaattccaattctttgaaggagagtgattcctc |
16625296 |
T |
|
| Q |
119 |
cttcattctttgtaatttttcttagtgatggcacgcatatccggtcgtagaatgggacccataggcctatgacgatcaacgatatgactccgagtgaacc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16625297 |
cttcattctttgtaatttttcttagtgatggcacgcatatccggtcgtagaatgggacccataggcctatgacgatcaacgatatgactccgagtgaacc |
16625396 |
T |
|
| Q |
219 |
agctggaatttggaattttggtccgaggtgtcggtccattttcatggcttgtgatacaataaatgttccttgttgcgccatcgtggtgaaacctaggata |
318 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
16625397 |
ggctgggatttggaattttggtccgaggtgtcggtccattttcatggcttgtgatacaataaatgttccttgttgcgccatcgcagtgaaacctaggata |
16625496 |
T |
|
| Q |
319 |
ccggccgcccaaattggtaatgttcttgctaagcattttacctcttctacttgttggatgctcacaaggttccattgatttacgatggttccctctggat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16625497 |
ccggccgcccaaattggtaatgttcttgctaagcattttacctcttctacttgttggatgctcacaaggttccattgatttacgatggttccatctggat |
16625596 |
T |
|
| Q |
419 |
ttaaatcaccctccattactagagcagctttatccaaaaccctagattatacatataaatttatagttagattttagatcaaatgtaataaataataact |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16625597 |
ttaaatcaccctccattactagagcagctttatccaaaaccctagattatacatataaatttatagttagattttagatcaaatgtaataaataataact |
16625696 |
T |
|
| Q |
519 |
taaatatctgtttgctaaatatagaaaaagtagtatttggtgttttaaaaaatgttaatctcatttttcacaatttgacttgagaaatgaaatttcacaa |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16625697 |
taaatatctgtttgctaaatatagaaaaagtagtatttggtgttttaaaaaatgttaatctcatttttcacaatttgacttgagaaatgaaatttcacaa |
16625796 |
T |
|
| Q |
619 |
ttctagcaatataatttgttgtcgaaatttgatatcaaatttgtgtctgaaaataatataactctttaagatatagatatcaacttttttgtaaagagta |
718 |
Q |
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| T |
16625797 |
ttctagcaatataatttgttgtcgaaatttgatatcaaatttgtgtctgaaaataatataactctttaagatatagatatcaacttttttgtaaagagta |
16625896 |
T |
|
| Q |
719 |
gtgctactta |
728 |
Q |
| |
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|||||||||| |
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| T |
16625897 |
gtgctactta |
16625906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 777 - 876
Target Start/End: Original strand, 16625905 - 16626004
Alignment:
| Q |
777 |
tagcaaaattattgttggaaagagaaaataatgaatnnnnnnnnnnnnggtcatccaacggtcataaacaagtcgtgcacattcgtgcttgtatggccat |
876 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| ||||||||||||||| |
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| T |
16625905 |
tagcaaaattattgtgggaaagagaaaataatgaataaaaagaaaaaaggtcatccaacggtcataaacaagtcgttcgcattcatgcttgtatggccat |
16626004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 1e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 199 - 433
Target Start/End: Complemental strand, 25275277 - 25275043
Alignment:
| Q |
199 |
gatatgactccgagtgaaccagctggaatttggaattttggtccgaggtgtcggtccattttcatggcttgtgatacaataaatgttccttgttgcgcca |
298 |
Q |
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||||||||||| | |||||||||||| ||||| ||||| ||||| | ||||| ||||||||||| ||||||| ||||| | |||||||||||||| || | |
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| T |
25275277 |
gatatgactcccattgaaccagctgggatttgaaatttgggtcctaagtgtctgtccattttcaaggcttgtaatacagtgaatgttccttgttgtgcta |
25275178 |
T |
|
| Q |
299 |
tcgtggtgaaacctaggataccggccgcccaaattggtaatgttcttgctaagcattttacctcttctacttgttggatgctcacaaggttccattgatt |
398 |
Q |
| |
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| | |||| || || || || || ||||||||||| || ||||||||||| ||||| ||||||||||||||||| ||||| |||| ||||| | || |
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| T |
25275177 |
tggatgtgagactaagaatcccagctgcccaaattggaaaagttcttgctaaacatttaacctcttctacttgttgaatgcttgcaagtttccacttgtt |
25275078 |
T |
|
| Q |
399 |
tacgatggttccctctggatttaaatcaccctcca |
433 |
Q |
| |
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||| ||| | || |||| |||||| |||||||||| |
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| T |
25275077 |
tactatgctcccatctgaatttaattcaccctcca |
25275043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 739 - 808
Target Start/End: Complemental strand, 8672558 - 8672489
Alignment:
| Q |
739 |
aaagcctacgaatttcgacgacacgacaatcaggtagatagcaaaattattgttggaaagagaaaataat |
808 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| | | |||| || | ||| |||||||||||||||| |
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| T |
8672558 |
aaagcccacgaatttcgacgacacgacaatcaggtcgttggcaagataaatgtgggaaagagaaaataat |
8672489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 858 - 896
Target Start/End: Complemental strand, 8672440 - 8672402
Alignment:
| Q |
858 |
ttcgtgcttgtatggccatcgtaccataaagcattttcc |
896 |
Q |
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||||||||| |||||||||||| |||||||||||||||| |
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| T |
8672440 |
ttcgtgcttatatggccatcgtgccataaagcattttcc |
8672402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 710 - 808
Target Start/End: Complemental strand, 46832040 - 46831941
Alignment:
| Q |
710 |
taaagagtagtgctacttaacacgactctaaa-gcctacgaatttcgacgacacgacaatcaggtagatagcaaaattattgttggaaagagaaaataat |
808 |
Q |
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||||||||||||||| || |||||||||||| ||| |||||||||||||||||| ||||||||| ||| |||| || | ||| |||||||||||||||| |
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| T |
46832040 |
taaagagtagtgctatgtagcacgactctaaaagcccacgaatttcgacgacacggcaatcaggttgatggcaagataaatgtgggaaagagaaaataat |
46831941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 713 - 808
Target Start/End: Complemental strand, 46832227 - 46832131
Alignment:
| Q |
713 |
agagtagtgctacttaacacgactctaaa-gcctacgaatttcgacgacacgacaatcaggtagatagcaaaattattgttggaaagagaaaataat |
808 |
Q |
| |
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|||||||||||| || |||||||||||| ||| ||||||||| |||||||| ||||||||| ||| |||| || | ||| | |||||||||||||| |
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| T |
46832227 |
agagtagtgctatgtagcacgactctaaaagcccacgaatttcaacgacacggcaatcaggtcgatggcaagataaatgtggaaaagagaaaataat |
46832131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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