View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4531_low_11 (Length: 295)
Name: NF4531_low_11
Description: NF4531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4531_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 33993563 - 33993279
Alignment:
| Q |
1 |
cactgaacctgttgtagtctgtgagatcttctccatgaatgaatccatcgattcgcgaagtggatcaaaccatcttccagcatacactaactctgcatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993563 |
cactgaacctgttgtagtctgtgagatcttctccatgaatgaatccatcgattcgcgaagtggatcaaaccatcttccagcatacactaactctgcatat |
33993464 |
T |
|
| Q |
101 |
ttaagtgctaatgagtctttaagctgaagtgtttcacgatcaagagtcaaagtctctaagtctcttgctgcagtgaagagaatggtgccacctggagttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993463 |
ttaagtgctaatgagtctttaagctgaagtgtttcacgatcaagagtcaaagtctctaagtctcttgctgcagtgaagagaatggtgccacctggagttt |
33993364 |
T |
|
| Q |
201 |
cgtaaactcctcggctcttcatgcctacaatgcggtcttcaaccaagtcgacacggcctattccatgccttccacctatctcatt |
285 |
Q |
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| T |
33993363 |
cgtaaactcctcggctcttcatgcctacaatgcggtcttcaaccaagtcgacacggcctattccatgccttccacctatctcatt |
33993279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 34000565 - 34000281
Alignment:
| Q |
1 |
cactgaacctgttgtagtctgtgagatcttctccatgaatgaatccatcgattcgcgaagtggatcaaaccatcttccagcatacactaactctgcatat |
100 |
Q |
| |
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|||||||||||||||| ||| ||||||||| |||||||||| |||||| || || ||||| ||||| ||||| |||||||||||||||||||||||||| |
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| T |
34000565 |
cactgaacctgttgtaatctctgagatcttttccatgaatgcatccattgactcacgaagaggatcgaaccaccttccagcatacactaactctgcatac |
34000466 |
T |
|
| Q |
101 |
ttaagtgctaatgagtctttaagctgaagtgtttcacgatcaagagtcaaagtctctaagtctcttgctgcagtgaagagaatggtgccacctggagttt |
200 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||| || || ||| ||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
34000465 |
ttaattgctaacgagtctttaagctgaagtgtttcacgatcgagtgttaaactctctaagtctcttgctgcggtgaagaaaatggtgccacctggagttt |
34000366 |
T |
|
| Q |
201 |
cgtaaactcctcggctcttcatgcctacaatgcggtcttcaaccaagtcgacacggcctattccatgccttccacctatctcatt |
285 |
Q |
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| ||||||||||||||||||| |||||||||| ||| |||||| | ||||||| |||||||||||||||||||||||||||||| |
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| T |
34000365 |
cataaactcctcggctcttcaggcctacaatgtggttttcaactatatcgacacagcctattccatgccttccacctatctcatt |
34000281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 286
Target Start/End: Original strand, 18852409 - 18852690
Alignment:
| Q |
5 |
gaacctgttgtagtctgtgagatcttctccatgaatgaatccatcgattcgcgaagtggatcaaaccatcttccagcatacactaactctgcatatttaa |
104 |
Q |
| |
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||||||||||| |||| || ||||||| ||| || | |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
18852409 |
gaacctgttgtggtctctgtaatcttctgcataaaggcatccatggattcgcgaagtggatcaaaccatcttccggcatacactaactctgcatatttaa |
18852508 |
T |
|
| Q |
105 |
gtgctaatgagtctttaagctgaagtgtttcacgatcaagagtcaaagtctctaagtctcttgctgcagtgaagagaatggtgccacctggagtttcgta |
204 |
Q |
| |
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|||||||||| ||||| | ||| | |||||| |||||||| ||||||| ||| || || | ||| |||| || || || || ||||| || |||||||| |
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| T |
18852509 |
gtgctaatgaatctttgacctgtattgtttctcgatcaagtgtcaaagactccaactcccgtgcggcagcaaaaaggatagttccaccaggtgtttcgta |
18852608 |
T |
|
| Q |
205 |
aactcctcggctcttcatgcctacaatgcggtcttcaaccaagtcgacacggcctattccatgccttccacctatctcattg |
286 |
Q |
| |
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|||||| ||||| ||||||||||||| || | ||||||| ||||| ||||| ||||| ||||||||||||||||||||| |
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| T |
18852609 |
aactccgcggcttttcatgcctacaagccgattctcaaccatgtcgatccggccaattccgtgccttccacctatctcattg |
18852690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 44 - 286
Target Start/End: Original strand, 42865559 - 42865801
Alignment:
| Q |
44 |
tccatcgattcgcgaagtggatcaaaccatcttccagcatacactaactctgcatatttaagtgctaatgagtctttaagctgaagtgtttcacgatcaa |
143 |
Q |
| |
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|||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| | ||| | |||||| ||||||| |
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| T |
42865559 |
tccatcgactcacgaagtggatcaaaccatctaccagcatacactaactctgcatatttaagggctaatgtatctttcacctgtattgtttctcgatcaa |
42865658 |
T |
|
| Q |
144 |
gagtcaaagtctctaagtctcttgctgcagtgaagagaatggtgccacctggagtttcgtaaactcctcggctcttcatgcctacaatgcggtcttcaac |
243 |
Q |
| |
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| ||||||| ||| || || | |||||| | ||||| || || ||||| |||||||| |||||||| ||||||||||||||||||| | | ||||| |
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| T |
42865659 |
gtgtcaaagactccaactcccgtgctgctttaaagaggatagtcccaccaggagtttcataaactccacggctcttcatgcctacaagcctattctcaac |
42865758 |
T |
|
| Q |
244 |
caagtcgacacggcctattccatgccttccacctatctcattg |
286 |
Q |
| |
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|| ||||| ||||| ||||| ||| ||||||||||||||||| |
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| T |
42865759 |
catgtcgatccggccaattccgtgctttccacctatctcattg |
42865801 |
T |
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