View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4531_low_13 (Length: 236)
Name: NF4531_low_13
Description: NF4531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4531_low_13 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 2332499 - 2332266
Alignment:
| Q |
3 |
catgtccaagaatatgccaacaaattttgtaaaatatcggttgaaatccatcatgtcctagggctttgtaagagtgcatagggaaaatagaatctttaat |
102 |
Q |
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| T |
2332499 |
catgcccaacaatatgccaacaaattttgtaaaatatcggttgaaatccatcatgtcctagggctttgtaagagtgcatagggaaaatagaatctttaat |
2332400 |
T |
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| Q |
103 |
cctttccatagttacaggcaagagaagctggtccatcaagttaatgctaagagatggaatattatccagttgtaaactatatgagaggtttacagggatc |
202 |
Q |
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| T |
2332399 |
cctttccatagtgacaggcaagagaagctggtccatcaagctaatgccaagagatggaatattatccagttgtaaactatatgagaggtttacagggatc |
2332300 |
T |
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| Q |
203 |
atttgattggaatagattcataaaaaactttgag |
236 |
Q |
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| T |
2332299 |
atttgattgggatagatgcataaaaaactttgag |
2332266 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 1261818 - 1261909
Alignment:
| Q |
8 |
ccaagaatatgccaacaaattttgtaaaatatcggttgaaatccatcatgtcctagggctttgtaagagtgcatagggaaaatagaatcttt |
99 |
Q |
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| T |
1261818 |
ccaacaatatgccaataagttttgaaaaaaataggttgaaaaccatctggacccggggctttgtaagagtgcattgagaaaatagcatcttt |
1261909 |
T |
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