View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4531_low_9 (Length: 306)
Name: NF4531_low_9
Description: NF4531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4531_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 4 - 300
Target Start/End: Complemental strand, 35051820 - 35051524
Alignment:
| Q |
4 |
gacttgtttttggcatagtcacaacacttagatccctccgttatcaaaaggtgtcatgatctctaaattgcaagacatgtttctgtactactaaagtata |
103 |
Q |
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| T |
35051820 |
gacttgtttttggcatagtcacaacacttagatccctccgttatcaaaaggtgtcatgatctctaaattgcaagacatgtttctgtactgctaaagtata |
35051721 |
T |
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| Q |
104 |
taacaaatacataacaccactctaggaagctagcacataacacaatcaagagcctcatcacaaagtaacaaacatgtccactcaaagagacataaatata |
203 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35051720 |
taacaaatacataacaccactctaggcagctagcacataacacaatcaagagcctcatcacaaagtaacaaacatgtccactcaaagagacataaatata |
35051621 |
T |
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| Q |
204 |
aacctccaaaatgtgcaaagaacaaaagtgggactgaagctaaattgtttcaacaccaataacataaaaatcatccaaatcaaaatattataattct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35051620 |
aacctccaaaatgtgcaaagaacaaaagtgggactgaagctaaattgtttcaacaccaataacataaaaatcatccaaatcaaaatattataattct |
35051524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 41 - 300
Target Start/End: Original strand, 53323836 - 53324095
Alignment:
| Q |
41 |
ccgttatcaaaaggtgtcatgatctctaaattgcaagacatgtttctgtactactaaagtatataacaaatacataacaccactctagg----aagctag |
136 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
53323836 |
ccgttatcaaa-ggtgtcgtgatctctaaattgcaagacatgtttttgtactgctaaagtatataacaaatacataacaccactctaggcagctagctag |
53323934 |
T |
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| Q |
137 |
cacataacacaatcaagagcctcatcacaaagtaacaaacatgtccactcaaagagacataaatataaacctccaaaatgtgcaaagaacaaaagtggga |
236 |
Q |
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||||||||||||||||||||||||| || |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
53323935 |
cacataacacaatcaagagcctcat--cagagtaac-aacatgtccactgaaagagacataaatataaacctccaaaatgtgcaaagaacaaaagtgaca |
53324031 |
T |
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| Q |
237 |
ctgaagctaaattgtttcaacaccaataacataaaaatcatccaaatcaaaatattataattct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53324032 |
ctgaagctaaattgtttcaacaccaataacataaaaatcatccaaatcaaaatattataattct |
53324095 |
T |
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