View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4532-Insertion-1 (Length: 870)
Name: NF4532-Insertion-1
Description: NF4532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4532-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 561; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 8 - 656
Target Start/End: Original strand, 52910390 - 52911048
Alignment:
| Q |
8 |
gtttttgaaacttctaaatatatttcaaaaaagaatgaaaggaacgcatggaaacgatgcttcagtctttgaaagtattatgaaactaaagggagaaatg |
107 |
Q |
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| T |
52910390 |
gtttttgaaacttctaaatatatttcaaaaaagaatgaaaggaacgcatggaaacgatgcttcagtctttgaaagtattatgaaactaaagggagaaatg |
52910489 |
T |
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| Q |
108 |
atttgaaatgaagaaactaaagagagaaatggaaagcattgtattatttttcaatgaatcaaatgttacaatagtgatgaatcaaacttataggttagct |
207 |
Q |
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| T |
52910490 |
atttgaaatgaagaaactaaagagagaaatggaaagcattgtattatttttcaatgaatcaaatgttacaatagtgatgaatcaaacttataggttagct |
52910589 |
T |
|
| Q |
208 |
ctagactaggattacaagcgtgataccaattctaactacttctaactgtaatgccaattgacagtgagctattgatactcgtaattatttgttagttaag |
307 |
Q |
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| T |
52910590 |
ctagactaggataacaagcgtgataccaattctaactacttctaactgtaatgccaattgacagtgagctattgatactcgtaattatttgttagttaag |
52910689 |
T |
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| Q |
308 |
gttagatga---------gttctcaagtactcttttttcttcctttttaagaaaggaagacaatcacaaattgtgatgcaaagacaattcaaatacctca |
398 |
Q |
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| T |
52910690 |
gttagatgagttagcttggttctcaagtaatcttttttcttcctttttaagaaaggaagacaatcacaaattgtgatgcaaagacaattcaaatacctca |
52910789 |
T |
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| Q |
399 |
tcctgtgaataaaatcatacatggtgaatagaagacaattgaatagatcaacagatcatttgtaataacagtacaaacccccctttttatatctaacact |
498 |
Q |
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| T |
52910790 |
tcctgtgaataaaatcatacatggtgaataaaaga-aattgaatagatcaacagatcatttgtaataacagtacaaacccccctttttatatctaacact |
52910888 |
T |
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| Q |
499 |
taattttgaaaactggccaaatgattccat--nnnnnnnntgttcaaatgatcaagtttcttttgttgaagacaataattaagatttgatataaaaataa |
596 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
52910889 |
taattttgaaaactggccaaatgattccataaaaaaaaaatgttcaaatgatcaagtttcttttgttgaagacaataattaagatgtgatataaaaataa |
52910988 |
T |
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| Q |
597 |
aactgaacaactcatggtggtttttatattctaaccaccaatcagcgcctttaggctctc |
656 |
Q |
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| T |
52910989 |
aactgaacaatccatggtggtttttatattctaaccaccaatcagcgcctttaggctctc |
52911048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 702 - 870
Target Start/End: Original strand, 52911093 - 52911260
Alignment:
| Q |
702 |
gttgatagatgaaatgacaaaagtcatcggaaactcacatataactgggaggagccggactttgaacctaatcacggtgtccaacctaataattttggta |
801 |
Q |
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| T |
52911093 |
gttgatagatgaaatgacaaaagtcatcgaaaactcacatataactgg-aggagccggactttgaacctagtcacggtgtccaacctaataattttggta |
52911191 |
T |
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| Q |
802 |
ttcttgttagtcgagctagaacttgtggactctcgagaccaaattagcttaaatggttttattctttag |
870 |
Q |
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| T |
52911192 |
ttcttgttagttgagctagaacctgtggactcttgagaccaaattagcttaaatggttttattctttag |
52911260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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