View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4532-Insertion-12 (Length: 200)
Name: NF4532-Insertion-12
Description: NF4532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4532-Insertion-12 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 256944 - 257119
Alignment:
| Q |
18 |
atatgatattcattcattcattcattttaagatttaatgtaaatattttgttcttgcagtcttcacttcatggggaattgtgtggctaaggttagaatgt |
117 |
Q |
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| T |
256944 |
atatgatattcattcattcattcattttaagatttaatgtaaatattttgttcttgcagtcttcacttcatggggaattgtgtggctaaggttagaatgt |
257043 |
T |
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| Q |
118 |
tattcatttattgattcacactaacaatttaaaccatcattcatatgccgtgtgcgcgcgtgtgtatcaatatccatcat |
197 |
Q |
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| T |
257044 |
tattcatttattgattcacactaacaatttaaaccatcattcatatgccgtgt----gcgtgtgtatcaatatccatcat |
257119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 658976 - 658801
Alignment:
| Q |
18 |
atatgatattcattcattcattcattttaagatttaatgtaaatattttgttcttgcagtcttcacttcatggggaattgtgtggctaaggttagaatgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
658976 |
atatgatattcattcattcattcattttaagatttaatgtaaatattttgttcttgcagtcttcacttcatggggaattgtgtggctaaggttagaatgt |
658877 |
T |
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| Q |
118 |
tattcatttattgattcacactaacaatttaaaccatcattcatatgccgtgtgcgcgcgtgtgtatcaatatccatcat |
197 |
Q |
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| T |
658876 |
tattcatttattgattcacactaacaatttaaaccatcattcatatgccgtgt----gcgtgtgtatcaatatccatcat |
658801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 844712 - 844537
Alignment:
| Q |
18 |
atatgatattcattcattcattcattttaagatttaatgtaaatattttgttcttgcagtcttcacttcatggggaattgtgtggctaaggttagaatgt |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
844712 |
atatgatattcattcattcattcattttaagatttaatgtaaatattttgttcttgcagtcttcacttcatggggaattgtgtggctaaggttagaatgt |
844613 |
T |
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| Q |
118 |
tattcatttattgattcacactaacaatttaaaccatcattcatatgccgtgtgcgcgcgtgtgtatcaatatccatcat |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
844612 |
tattcatttattgattcacactaacaatttaaaccatcattcatatgccgtgt----gcgtgtgtatcaatatccatcat |
844537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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