View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4532-Insertion-3 (Length: 636)

Name: NF4532-Insertion-3
Description: NF4532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4532-Insertion-3
NF4532-Insertion-3
[»] chr2 (5 HSPs)
chr2 (258-632)||(41516323-41516699)
chr2 (8-258)||(41516723-41516974)
chr2 (76-110)||(26626759-26626793)
chr2 (76-108)||(40835437-40835469)
chr2 (76-108)||(41812239-41812271)
[»] chr4 (2 HSPs)
chr4 (74-110)||(22539200-22539236)
chr4 (76-108)||(44863117-44863149)
[»] chr3 (3 HSPs)
chr3 (76-110)||(46886850-46886884)
chr3 (76-108)||(849555-849587)
chr3 (74-110)||(19983651-19983687)
[»] chr1 (5 HSPs)
chr1 (76-110)||(27820493-27820527)
chr1 (76-108)||(27970428-27970460)
chr1 (76-108)||(33541873-33541905)
chr1 (76-108)||(38189658-38189690)
chr1 (76-108)||(47498998-47499030)
[»] chr8 (2 HSPs)
chr8 (76-108)||(14956460-14956492)
chr8 (76-108)||(29819045-29819077)
[»] chr7 (1 HSPs)
chr7 (76-108)||(18865215-18865247)
[»] chr6 (1 HSPs)
chr6 (76-108)||(10645484-10645516)
[»] chr5 (2 HSPs)
chr5 (76-108)||(7706144-7706176)
chr5 (76-108)||(32372497-32372529)


Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 258 - 632
Target Start/End: Complemental strand, 41516699 - 41516323
Alignment:
Q  258 ataaaccttaaacaacctcataaaagtgaaaaaagaagttacttgagaataaagagcttcaagggtttcttgggtggcagtttgaagaggaccaacatat 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41516699 ataaaccttaaacaacctcataaaagtgaaaaaagaagttacttgagaataaagagcttcaagggtttcttgggtggcagtttgaagaggaccaacatat 41516600  T
Q  358 atacaagatggaccatgaggacggtcgtcgcaggtggcagagatccgaagagaaaaggaagatgaaacagaacggttgtttctgattttggatacttgta 457  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41516599 atacaagatggaccatgaggacggtcgtcgcaggtggcacagatacgaagagagaaggaagatgaaacagaacggttgtttctgattttggatacttgta 41516500  T
Q  458 acaccgtccatccacctaaagcggtgccgctgttgcttgtgcttgccaacatgttcatatgtgttttttgtgtctttgtttctgttagatattttatgta 557  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  41516499 acaccgtccatccacctaaagcggtgctgctgttgcttgtgcttgccaacatgttcatatgtgttttttgtgtctttgtttcttttagata-tttatgta 41516401  T
Q  558 gta----gtaggataagaagtgaacaaagacaaatgtgctttgtgtcaaaacttcacattcctatatttctatctcttc 632  Q
    |||     || |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41516400 gtaagatttaagataagaaatgaacaaagacaaatgtg-tttgtgtcaaaacttcacattcctatatttctatctcttc 41516323  T

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Target: chr2; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 41516974 - 41516723
Alignment:
Q  8 agtaggtaagctcaaataagtaaatcaaaagggacctaaaccaaaggagggaacaccccaacaaagtctttggataaacaacttatttgcaggttatagc 107  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41516974 agtaggtaagctcaaataagtcaatcaaaagggacctaaaccaaaggagggaacaccccaataaagtctttggataaacaacttatttgcaggttatagc 41516875  T
Q  108 atagtaaatgcttgtctataagcaatttcgttaaattgttttcgtataggtcataagctacctaccttggataacttacaaaaatagactgaaagac-ag 206  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41516874 atagtaaatgcttgtctataagctatttcgttaaattgttttcgtataggtcataagctacctaccttggataacttacaaaaatagactgaaagacaag 41516775  T
Q  207 acagttttaaacagtctctcacgaagcttatgttagtaaataagtcaatcga 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41516774 acagttttaaacagtctctcacgaagcttatgttagtaaataagtcaatcga 41516723  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 76 - 110
Target Start/End: Original strand, 26626759 - 26626793
Alignment:
Q  76 tttggataaacaacttatttgcaggttatagcata 110  Q
    |||||||||||||||||||||||| ||||||||||    
T  26626759 tttggataaacaacttatttgcagcttatagcata 26626793  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 40835437 - 40835469
Alignment:
Q  76 tttggataaacaacttatttgcaggttatagca 108  Q
    |||||||||||||||||||||||| ||||||||    
T  40835437 tttggataaacaacttatttgcagcttatagca 40835469  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 41812271 - 41812239
Alignment:
Q  76 tttggataaacaacttatttgcaggttatagca 108  Q
    |||||||||||||||||||||||| ||||||||    
T  41812271 tttggataaacaacttatttgcagtttatagca 41812239  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 22539236 - 22539200
Alignment:
Q  74 tctttggataaacaacttatttgcaggttatagcata 110  Q
    |||||||||||| ||||||||||||||||||||||||    
T  22539236 tctttggataaataacttatttgcaggttatagcata 22539200  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 44863149 - 44863117
Alignment:
Q  76 tttggataaacaacttatttgcaggttatagca 108  Q
    |||||||||||||||||||||||| ||||||||    
T  44863149 tttggataaacaacttatttgcagcttatagca 44863117  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 46886884 - 46886850
Alignment:
Q  76 tttggataaacaacttatttgcaggttatagcata 110  Q
    |||||||||||||||||||||||| ||||||||||    
T  46886884 tttggataaacaacttatttgcagcttatagcata 46886850  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 849555 - 849587
Alignment:
Q  76 tttggataaacaacttatttgcaggttatagca 108  Q
    |||||||||||||||||||||||| ||||||||    
T  849555 tttggataaacaacttatttgcagcttatagca 849587  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 19983651 - 19983687
Alignment:
Q  74 tctttggataaacaacttatttgcaggttatagcata 110  Q
    |||||||||||||||||||||||||  ||||||||||    
T  19983651 tctttggataaacaacttatttgcaatttatagcata 19983687  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 27820527 - 27820493
Alignment:
Q  76 tttggataaacaacttatttgcaggttatagcata 110  Q
    |||||||||||||||||||||||| ||||||||||    
T  27820527 tttggataaacaacttatttgcagcttatagcata 27820493  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 27970460 - 27970428
Alignment:
Q  76 tttggataaacaacttatttgcaggttatagca 108  Q
    |||||||||||||||||||||||| ||||||||    
T  27970460 tttggataaacaacttatttgcagcttatagca 27970428  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 33541905 - 33541873
Alignment:
Q  76 tttggataaacaacttatttgcaggttatagca 108  Q
    |||||||||||||||||||||||| ||||||||    
T  33541905 tttggataaacaacttatttgcagtttatagca 33541873  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 38189658 - 38189690
Alignment:
Q  76 tttggataaacaacttatttgcaggttatagca 108  Q
    |||||||||||||||||||||||| ||||||||    
T  38189658 tttggataaacaacttatttgcagtttatagca 38189690  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 47499030 - 47498998
Alignment:
Q  76 tttggataaacaacttatttgcaggttatagca 108  Q
    |||||||||||||||||||||||| ||||||||    
T  47499030 tttggataaacaacttatttgcagcttatagca 47498998  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 14956492 - 14956460
Alignment:
Q  76 tttggataaacaacttatttgcaggttatagca 108  Q
    |||||||||||||||||||||||| ||||||||    
T  14956492 tttggataaacaacttatttgcagcttatagca 14956460  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 29819077 - 29819045
Alignment:
Q  76 tttggataaacaacttatttgcaggttatagca 108  Q
    |||||||||||||||||||||||| ||||||||    
T  29819077 tttggataaacaacttatttgcagcttatagca 29819045  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 18865247 - 18865215
Alignment:
Q  76 tttggataaacaacttatttgcaggttatagca 108  Q
    |||||||||||||||||||||||| ||||||||    
T  18865247 tttggataaacaacttatttgcagcttatagca 18865215  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 10645516 - 10645484
Alignment:
Q  76 tttggataaacaacttatttgcaggttatagca 108  Q
    |||||||||||||||||||||||| ||||||||    
T  10645516 tttggataaacaacttatttgcagcttatagca 10645484  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 7706176 - 7706144
Alignment:
Q  76 tttggataaacaacttatttgcaggttatagca 108  Q
    |||| ||||||||||||||||||||||||||||    
T  7706176 tttgtataaacaacttatttgcaggttatagca 7706144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 32372497 - 32372529
Alignment:
Q  76 tttggataaacaacttatttgcaggttatagca 108  Q
    |||||||||||||||||||||||| ||||||||    
T  32372497 tttggataaacaacttatttgcagcttatagca 32372529  T

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