View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4532-Insertion-4 (Length: 574)
Name: NF4532-Insertion-4
Description: NF4532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4532-Insertion-4 |
 | |
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| [»] chr8 (15 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 560; Significance: 0; HSPs: 15)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 7 - 574
Target Start/End: Original strand, 36184206 - 36184773
Alignment:
| Q |
7 |
aaataaaacagttacaatatgttatactatttagcaaaagtgacatgttaacagaaccaaccataccaaacatagttcaaaccattttatcgaagaggaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36184206 |
aaataaaacagttacaatatgttatactatttagcaaaagtgacatgttaacagaaccaaccataccaaacatagttcaaaccattttatcgaagaggaa |
36184305 |
T |
|
| Q |
107 |
gttaaattccctcctcccttgaaagaaccgcagtggaaattactgcaagaaacaagtgaaatcttaccatagctcaaggtgtattcaagtgtaactaaca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36184306 |
gttaaattccctcctcccttgaaagaaccgcagtggaaattactgcaagaaacaagtgaaatcttaccatagctcaaggtgtattcaagtgtaactaaca |
36184405 |
T |
|
| Q |
207 |
agaaacaaacaaagtgtcattagatttgacactatatacaataatagactatcatgacagttattattatctgcactggattcatatcttagattacaag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36184406 |
agaaacaaacaaagtgtcattagatttgacactatatacaataatagactatcatgacagttattattatctgcactggattcatatcttagattacaag |
36184505 |
T |
|
| Q |
307 |
cacaagcatttaacagaaaaacaaaatcttagttcatctacaacaacaaagcacttgtgaacctctctctaatctctccaacatggtgtcttccgtatga |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36184506 |
cacaagcatttaacagaaaaacaaaatcttagttcatctacaacaacaaagcacttgtgaacctctctctaatctctccaacatggtgtcttccgtatga |
36184605 |
T |
|
| Q |
407 |
tattcatgtctggacttcagattttcatcaactctgctcctaacactctagttggaagaaaaatcatgtcatgtctctgataattgtatcactttatcaa |
506 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36184606 |
tattcatgtttggacttcagattttcatcaactctgcttctaacactctagttggaagaaaaatcatgtcatgtctctgataattgtatcactttatcaa |
36184705 |
T |
|
| Q |
507 |
ccttcatatgtttggataatgcctccgagcttgttgatgtgagcaatatcttgcaaccattatgatct |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36184706 |
ccttcatatgtttggataatgcctccgagcttgttgatgtgagcaatatcttgcaaccattatgatct |
36184773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 288 - 574
Target Start/End: Original strand, 36207675 - 36207957
Alignment:
| Q |
288 |
tcatatcttagattacaagcacaagcatttaacagaaaaacaaaatcttagttcatctacaacaacaaagcacttgtgaacctctctctaatctctccaa |
387 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||||||| |
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|
| T |
36207675 |
tcatatcttggattacaagcacaagcatttaacagaaaaacaaaatcttagttcatatacaacaacaaatcacatgtgaacctct----aatctctccaa |
36207770 |
T |
|
| Q |
388 |
catggtgtcttccgtatgatattcatgtctggacttcagattttcatcaactctgctcctaacactctagttggaagaaaaatcatgtcatgtctctgat |
487 |
Q |
| |
|
|||||||| ||| |||||| | ||||| ||||||||| ||||||||||||||| || ||||||| || ||||||||| ||||||||||||||||||||| |
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|
| T |
36207771 |
catggtgttttcgatatgatgtgcatgtttggacttcaaattttcatcaactctacttctaacacactggttggaagagaaatcatgtcatgtctctgat |
36207870 |
T |
|
| Q |
488 |
aattgtatcactttatcaaccttcatatgtttggataatgcctccgagcttgttgatgtgagcaatatcttgcaaccattatgatct |
574 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| |
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|
| T |
36207871 |
aattgtattaatttatcaaccttcatatgtttggataaagcctccgagcttgtagatgtcagcaatatcttgcaaccattatgatct |
36207957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 36209590 - 36209761
Alignment:
| Q |
7 |
aaataaaacagttacaatatgttatactatttagcaaa-agtgacatgttaacagaaccaaccataccaaacatagttcaaaccattttatcgaagagga |
105 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
36209590 |
aaataaaacagctacaatatgttatactatttagcaaacaatgacttgttaacagaaccaaccataccaaacatagttcaaaccatcttattagagagga |
36209689 |
T |
|
| Q |
106 |
agttaaattccctcctcccttgaaagaaccgcagtggaaattactgcaagaaacaagtgaaatcttaccata |
177 |
Q |
| |
|
|| | ||||| |||||||| |||||||| ||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36209690 |
aggtgaattcttccctccctttaaagaaccacagaggaaattactgcaagaaacaagggaaatcttaccata |
36209761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 36196467 - 36196637
Alignment:
| Q |
7 |
aaataaaacagttacaatatgttatactatttagcaaaagtgacatgttaacagaaccaaccataccaaacatagttcaaaccattttatcgaagaggaa |
106 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| |||| ||| |
|
|
| T |
36196467 |
aaataaaacagctacaatatgctatactatttagcaaaagtgacttgttaacagaagcaaccattccaaacatagttcaaaccattttatcaaagaagaa |
36196566 |
T |
|
| Q |
107 |
gttaaattccctcctcccttgaaagaaccgcagtggaaattactgcaagaaacaagtgaaatcttaccata |
177 |
Q |
| |
|
| |||||| |||||||| |||||||| ||| ||||||||||||||||||| | |||||||||||||| |
|
|
| T |
36196567 |
agtgaattcctccctccctttaaagaaccacagacgaaattactgcaagaaacaggggaaatcttaccata |
36196637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 301 - 574
Target Start/End: Original strand, 36188343 - 36188611
Alignment:
| Q |
301 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatctacaacaac-aaagcacttgtgaacctctctctaatctctccaacatggtgtcttc |
399 |
Q |
| |
|
||||| ||||||||||| |||||| | ||||||||||||||||||| | | || ||||||||| | ||| ||||||||||||||||||||||| ||| |
|
|
| T |
36188343 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctatacctacaaaagcacttctcaac----ctctaatctctccaacatggtgttttc |
36188437 |
T |
|
| Q |
400 |
cgtatgatattcatgtctggacttcagattttcatcaactctgctcctaacactctagttggaagaaaaatcatgtcatgtctctgataattgtatcact |
499 |
Q |
| |
|
| | ||| | ||||| ||||||| ||||||||||| ||||||| | ||| |||| |||||||| | ||||||||||||||||| | |||||||||| | |
|
|
| T |
36188438 |
caaacgatgtgcatgtttggacttatgattttcatcatctctgctacaaacgctcttgttggaag-agaatcatgtcatgtctctcacaattgtatcaat |
36188536 |
T |
|
| Q |
500 |
ttatcaaccttcatatgtttggataatgcctccgagcttgttgatgtgagcaatatcttgcaaccattatgatct |
574 |
Q |
| |
|
|||| ||||||||| || | ||||| ||||| | ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36188537 |
ttatgaaccttcatttgctcagataaaacctccaaacttgtagatgtgagcaatatcttgcaaccattatgatct |
36188611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 301 - 574
Target Start/End: Original strand, 36196661 - 36196929
Alignment:
| Q |
301 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatctacaacaac-aaagcacttgtgaacctctctctaatctctccaacatggtgtcttc |
399 |
Q |
| |
|
||||| ||||||||||| |||||| | ||||||||||||||||||| | | || ||||||||| | ||| ||||||||||||||||||||||| ||| |
|
|
| T |
36196661 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctatacctacaaaagcacttctcaac----ctctaatctctccaacatggtgttttc |
36196755 |
T |
|
| Q |
400 |
cgtatgatattcatgtctggacttcagattttcatcaactctgctcctaacactctagttggaagaaaaatcatgtcatgtctctgataattgtatcact |
499 |
Q |
| |
|
| | ||| | ||||| ||||||| ||||||||||| ||||||| | ||| |||| |||||||| | ||||||||||||||||| | |||||||||| | |
|
|
| T |
36196756 |
caaacgatgtgcatgtttggacttatgattttcatcatctctgctacaaacgctcttgttggaag-agaatcatgtcatgtctctcacaattgtatcaat |
36196854 |
T |
|
| Q |
500 |
ttatcaaccttcatatgtttggataatgcctccgagcttgttgatgtgagcaatatcttgcaaccattatgatct |
574 |
Q |
| |
|
|||| ||||||||| || | ||||| ||||| | ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36196855 |
ttatgaaccttcatttgctcagataaaacctccaaacttgtagatgtgagcaatatcttgcaaccattatgatct |
36196929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 286 - 574
Target Start/End: Original strand, 36200813 - 36201100
Alignment:
| Q |
286 |
attcatatcttagattacaagcacaagcatttaacagaaaaa---caaaatcttagttcatctacaacaacaaagcacttgtgaacctctctctaatctc |
382 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| ||||| ||||| ||| |||| || |||| | |
|
|
| T |
36200813 |
attcatatctaagattacaagcacaagcgtttgacagaaaaaaaacaaaatcttagttcatctacaccaacacagcacctgtcaaccact----aatcac |
36200908 |
T |
|
| Q |
383 |
tccaacatggtgtcttccgtatgatattcatgtctggacttcagattttcatcaactctgctcctaacactctagttggaagaaaaatcatgtcatgtct |
482 |
Q |
| |
|
|||||||||||| |||| |||||| | ||||| || ||| || ||||| ||||||||||| | |||| |||||| |||| | ||||||| |||||||| |
|
|
| T |
36200909 |
tccaacatggtgctttccatatgatgtgcatgtttgaactacaagttttcgtcaactctgcttcaaacagtctagtaggaaaagaaatcatatcatgtct |
36201008 |
T |
|
| Q |
483 |
ctgataattgtatcactttatcaaccttcatatgtttggataatgcctccgagcttgttgatgtgagcaatatcttgcaaccattatgatct |
574 |
Q |
| |
|
||||||| ||| ||| ||||| ||| |||| |||| |||||| ||||| ||| | | ||||||||||| ||||||||||||||||||| |
|
|
| T |
36201009 |
ctgataactgtgtcaatttatgaactgtcatttgttcggataaaacctccacacttttaggtgtgagcaataccttgcaaccattatgatct |
36201100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 301 - 574
Target Start/End: Original strand, 36209785 - 36210044
Alignment:
| Q |
301 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatctacaacaacaaagcacttgtgaacctctctctaatctctccaacatggtgtcttcc |
400 |
Q |
| |
|
||||| ||||||||||| |||||| | ||||||||||||||||||| ||| |||||||||| | ||||||| ||||||||||||||||||| |||| |
|
|
| T |
36209785 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctataactgcaaagcacttctcaacctct----aatctctccaacatggtgttttcc |
36209879 |
T |
|
| Q |
401 |
gtatgatattcatgtctggacttcagattttcatcaactctgctcctaacactctagttggaagaaaaatcatgtcatgtctctgataattgtatcactt |
500 |
Q |
| |
|
| ||| | ||||| | |||||||||||||||||| ||||||| | ||| |||| |||||||| ||||||||| ||||||||| ||||| || |
|
|
| T |
36209880 |
aaacgatgtgcatgtttcgacttcagattttcatcatctctgctacaaacgctcttgttggaag-aaaatcatgccatgtctct--------tatcaatt |
36209970 |
T |
|
| Q |
501 |
tatcaaccttcatatgtttggataatgcctccgagcttgttgatgtgagcaatatcttgcaaccattatgatct |
574 |
Q |
| |
|
||| ||||||||| || |||||||| ||||| | ||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
36209971 |
tatgaaccttcatttgcttggataaaacctccaaacttgtagatgtcagcaatatcttgcaaccattatgatct |
36210044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 36188146 - 36188319
Alignment:
| Q |
7 |
aaataaaacagttacaatatgttatactatttagcaaa-agtgacatgtt---aacagaaccaaccataccaaacatagttcaaaccattttatcgaaga |
102 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||| |||| |||||||| ||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
36188146 |
aaattaaacagttacaatatgttatactatttagcaaaccatgacttgttaacaacagaacaaaccataccaaacctagttcaaaccattttattagaga |
36188245 |
T |
|
| Q |
103 |
ggaagttaaattccctcctcccttgaaagaaccgcagtggaaattactgcaagaaacaagtgaaatcttaccata |
177 |
Q |
| |
|
||||| | ||||||| |||||||| ||||| || ||| |||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
36188246 |
ggaaggtgaattcccccctccctttaaagagccacagaggaaattactgcaagaaa-aagggaaatcttaccata |
36188319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 402 - 574
Target Start/End: Original strand, 36213215 - 36213386
Alignment:
| Q |
402 |
tatgatattcatgtctggacttcagattttcatcaactctgctcctaacactctagttggaagaaaaatcatgtcatgtctctgataattgtatcacttt |
501 |
Q |
| |
|
|||||| | ||||| ||||||||| ||||| |||||||||||| | |||||| ||||| ||||| || ||||||||||||||||||||||| |||| ||| |
|
|
| T |
36213215 |
tatgatgtgcatgtttggacttcaaatttttatcaactctgcttcaaacactttagtttgaagagaa-tcatgtcatgtctctgataattgaatcaattt |
36213313 |
T |
|
| Q |
502 |
atcaaccttcatatgtttggataatgcctccgagcttgttgatgtgagcaatatcttgcaaccattatgatct |
574 |
Q |
| |
|
|| | ||||||| || |||||||| ||||| ||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
36213314 |
atgagccttcatttgattggataaaacctccacacttgtagatgtgagtaatatcttgcaaccattatgatct |
36213386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 409 - 574
Target Start/End: Original strand, 36202321 - 36202485
Alignment:
| Q |
409 |
ttcatgtctggacttcagattttcatcaactctgctcctaacactctagttggaagaaaaatcatgtcatgtctctgataattgtatcactttatcaacc |
508 |
Q |
| |
|
||||||| | |||||||||||||||||| ||||||| | ||| ||||||| ||||| | |||| |||||||||||| |||||||||| ||||| |||| |
|
|
| T |
36202321 |
ttcatgtttcgacttcagattttcatcatctctgcttcaaacgctctagtaagaagagat-tcatttcatgtctctgacaattgtatcaatttatgaacc |
36202419 |
T |
|
| Q |
509 |
ttcatatgtttggataatgcctccgagcttgttgatgtgagcaatatcttgcaaccattatgatct |
574 |
Q |
| |
|
||||| | ||||||||| ||||| | |||| ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
36202420 |
ttcatttctttggataaaacctccaaatttgtagatgtcagcaatatcttgcaacccttatgatct |
36202485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 36213154 - 36213209
Alignment:
| Q |
286 |
attcatatcttagattacaagcacaagcatttaacag-aaaaacaaaatcttagtt |
340 |
Q |
| |
|
||||||||| |||||| ||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
36213154 |
attcatatcatagatttcaagcacaagcatttgacagaaaaaacaaaatcttagtt |
36213209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 537 - 574
Target Start/End: Original strand, 36199041 - 36199078
Alignment:
| Q |
537 |
ttgttgatgtgagcaatatcttgcaaccattatgatct |
574 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36199041 |
ttgtagatgtgagcaatatcttgcaaccattatgatct |
36199078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 36200380 - 36200545
Alignment:
| Q |
11 |
aaaacagttacaatatgttatactatttagcaaa-agtgacatgttaacagaaccaaccataccaaacatagttcaaaccattttatcgaagaggaagtt |
109 |
Q |
| |
|
||||||| |||||||| ||| | |||||||||| | ||| |||||||||||| ||||||||||||| ||||||||| ||||| || |||||||| | |
|
|
| T |
36200380 |
aaaacagctacaatatattacatcatttagcaaacaacgacttgttaacagaactaaccataccaaaccgagttcaaactattttgtcaaagaggaaagt |
36200479 |
T |
|
| Q |
110 |
aaattccctcctcccttgaaagaaccgcagtggaaattactgcaagaaacaagtgaaatcttacca |
175 |
Q |
| |
|
|||||| ||| ||| ||||| || ||||| || ||||||||||||| |||||||||||| |
|
|
| T |
36200480 |
gaattcctctctctcttttctgaaccacataggaaaataatgcaagaaacaagagaaatcttacca |
36200545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 443
Target Start/End: Original strand, 36214651 - 36214833
Alignment:
| Q |
257 |
atcatgacagttattattatctgcactggattcatatctt-agattacaagcacaagcatttaacagaa-aaacaaaatcttagttcatctacaacaaca |
354 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||| | |||||||||||| ||| | || ||| || |||| ||||| || ||||| | ||||| |
|
|
| T |
36214651 |
atcatgacagttattattatctaaactgg--tcatatcttaaaattacaagcacatgcaactgaccgaataagcaaagtcttaattgatctataccaaca |
36214748 |
T |
|
| Q |
355 |
aagcacttgtgaacctctctctaatctctccaacatggtgtcttccgtatgatattcatgtctggacttcagattttcatcaactctgc |
443 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||| |||| |||| || | | ||||| ||||||||| ||||||| || |||||| |
|
|
| T |
36214749 |
aagcacttgtcaa----tctctaatctccccaacattgtgttttccaaataaagtgcatgtttggacttcaaattttcaccatctctgc |
36214833 |
T |
|
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