View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4532-Insertion-5 (Length: 502)
Name: NF4532-Insertion-5
Description: NF4532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4532-Insertion-5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 333
Target Start/End: Original strand, 5127757 - 5128082
Alignment:
| Q |
8 |
caaagaaactatgaaacatggtagaacagcacataacatgtcatcgtcttcattgcgtaagaaatctgacctaactcttgtctccaaagttcgctatgga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5127757 |
caaagaaactatgaaacatggtagaacagcacataacatgtcatcatcttcattgcgtaagaaatctgacctaactcttgtctccaaagttcgctatgga |
5127856 |
T |
|
| Q |
108 |
ttccttagaaaagttttggccaatttccaagaggttattcttggaacaaaactttcaattctgtttccaaccattccttttgctattatagctcaatgct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5127857 |
ttccttagaaaagttttggccaatttccaagaggttattcttggaacaaaactttcaattctgtttccaaccattccttttgctattatagctcaatgct |
5127956 |
T |
|
| Q |
208 |
atggattttcaagagtaagtatactatataccttttgcatgtgtgttatgattttaaattctagtcaagttacgctgcaaactttgatattgcaatcgat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5127957 |
atggattttcaagagtaagtatactatatactttttgcatgtgtgttatgattttaaattctagtcgagttacgctgcaaactttgatattgcaatcgat |
5128056 |
T |
|
| Q |
308 |
gagtagaaattgcaactttgatgtaa |
333 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
5128057 |
gagtagaaattgcaactttgatgtaa |
5128082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 358 - 475
Target Start/End: Original strand, 5128108 - 5128225
Alignment:
| Q |
358 |
atattgtgatcgtaattgcagctgaattatgtgtgttatatcgccatcaaagttttaaattacggtagaaaatgctgcaacatgtatccaagtttctgaa |
457 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5128108 |
atattgtgatcgcaattgtagctgaattatgtgtgttatatcgccatctaagttttaaattatggtagaaaatgctgcaacatgtatccaagtttctgaa |
5128207 |
T |
|
| Q |
458 |
ttatataagattatggta |
475 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
5128208 |
ttatataagattgtggta |
5128225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University