View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4532-Insertion-6 (Length: 439)
Name: NF4532-Insertion-6
Description: NF4532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4532-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 22326291 - 22326540
Alignment:
| Q |
8 |
gatttgacaagataggccattgtttttctttccagttctttctctaaagaaatacaaaaaacagtgtttagttttacaaaaacatagaataaaaacacta |
107 |
Q |
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| T |
22326291 |
gatttgacaagataggccattgtttttctttccagttctttctctaaagaaatacaaaaaacagtgtttagttttacaaaaacattgaataaaaacacta |
22326390 |
T |
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| Q |
108 |
aagaatgttatataaatagatcatatagtcgcagattcgcatagtattcagcaacagatnnnnnnnnnta-ctcaattatattagcaacctggtttacga |
206 |
Q |
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| T |
22326391 |
aagaatgttatataaatagatcatatagtcgcagattcgcatagaattcagcaacagataaaaaaaaaaaccccaattatattggcaacctggtgaacga |
22326490 |
T |
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| Q |
207 |
gagtgatgtgcccgccgtgctgctgtaagggagattggaaggataagaat |
256 |
Q |
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| T |
22326491 |
gagggctgcggccgccgtgatgctgtaagggagattggaaggataagaat |
22326540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 253 - 330
Target Start/End: Original strand, 22334720 - 22334797
Alignment:
| Q |
253 |
gaatggtgattttataattggtttgtggtggtcggagttaattaaatcttagagagaagtcggttggtgttgtttgat |
330 |
Q |
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| T |
22334720 |
gaatggtgattttataattggtttgtggtggtcggagttaattaaatcttagagagaagtcggttggtgttgtttgat |
22334797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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