View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4532-Insertion-7 (Length: 436)
Name: NF4532-Insertion-7
Description: NF4532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4532-Insertion-7 |
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| [»] scaffold0402 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 9 - 432
Target Start/End: Original strand, 2823 - 3260
Alignment:
| Q |
9 |
gattttaatttttcttttcaatagaagttataattcacagcttttatgttcagctgttgtacgatcctttcatccttggtagttagctctagattgtctc |
108 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2823 |
gattttaaattttcttttcaatagaagttatacttcacagcttttatgttcagctgttgtacgatcctttcatccttggtagttagctctagattgtctc |
2922 |
T |
|
| Q |
109 |
atattttggatgattt-------------atatcaatcattttctactgcataatcctgctaacaaatgttttgaaatcccgattttattgttatttcca |
195 |
Q |
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|||||||||||||||| ||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
2923 |
atattttggatgatttgtattagccttctatatcaatcattttccacagcataatcctgccaacaaatgttttgaaatcccgattttattgttatttcta |
3022 |
T |
|
| Q |
196 |
tatttctcggacatataattttcctctgattccccaaagggagcaatatgtcatttaatttgatgactcttt-ggactgctctttgatttttcttttaac |
294 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3023 |
tatttctcggacatataattttcctatgattccccaaagggagcaatatgtcatttaatttgatgactcttttggactgctctttgatttttcttttaac |
3122 |
T |
|
| Q |
295 |
tgcttctcttatgtaatggtttaaattgaaatttgttgagttaaataatagtaactttctacaatttcttatcctcattttctttagtcatcattttcca |
394 |
Q |
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|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3123 |
tggttctcttatgtaatggtttcaattgaaatttgttgagttaaataatagtaactttctacaatttcttatcctcattttctttagtcatcattttcca |
3222 |
T |
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| Q |
395 |
gcggaattgcaaggcaattggaaggaaaaccttctatc |
432 |
Q |
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| T |
3223 |
gcggaattgcaaggcaagtggaaggaaaaccttctatc |
3260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 61 - 387
Target Start/End: Original strand, 19335775 - 19336115
Alignment:
| Q |
61 |
gctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgattt-------------atatcaatcattttctactgcat |
147 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
19335775 |
gctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgatttgtattagccttctatatcaatcattttccactgcat |
19335874 |
T |
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| Q |
148 |
aatcctgctaacaaatgttttgaaatcccgattttattgttatttccatatttctcggacatataattttcctctgattccccaaagggagcaatatgtc |
247 |
Q |
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| T |
19335875 |
aatcctgccaacaaatgttttgaaatcccgattttattgttatttctatatttctcggacatataattttcctctgattccccaaagggagcaatatgtc |
19335974 |
T |
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| Q |
248 |
atttaatttgatgactc-tttggactgctctttgatttttcttttaactgcttctcttatgtaatggtttaaattgaaatttgttgagttaaataatagt |
346 |
Q |
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| T |
19335975 |
atttaatttgatgactcttttggactgctctttgatttttcttttaactggttctcttatgtaatggtttaaattgaattttgttgagttaaataatagt |
19336074 |
T |
|
| Q |
347 |
aactttctacaatttcttatcctcattttctttagtcatca |
387 |
Q |
| |
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| T |
19336075 |
aactttctacaatttcttatcctcattttctttagtcatca |
19336115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 60 - 387
Target Start/End: Original strand, 14933 - 15274
Alignment:
| Q |
60 |
agctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgattt-------------atatcaatcattttctactgca |
146 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||| |
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| T |
14933 |
agctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgatttgtattagccttctatatcaatcattttccacagca |
15032 |
T |
|
| Q |
147 |
taatcctgctaacaaatgttttgaaatcccgattttattgttatttccatatttctcggacatataattttcctctgattccccaaagggagcaatatgt |
246 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15033 |
aaatcctgccaacaaatgttttgaaatcccgattttattgttatttctatatttctcggacatataattttcctatgattccccaaagggagcaatatgt |
15132 |
T |
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| Q |
247 |
catttaatttgatgactc-tttggactgctctttgatttttcttttaactgcttctcttatgtaatggtttaaattgaaatttgttgagttaaataatag |
345 |
Q |
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| T |
15133 |
catttaatttgatgactcttttggactgctctttgatttttcttttaactggttctcttatgtaatggtttaaattgaaatttgttgagttaaataatag |
15232 |
T |
|
| Q |
346 |
taactttctacaatttcttatcctcattttctttagtcatca |
387 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
15233 |
taactttctacaatttcttatcctcattttctttagtcatca |
15274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 60 - 387
Target Start/End: Complemental strand, 17939010 - 17938669
Alignment:
| Q |
60 |
agctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgattt-------------atatcaatcattttctactgca |
146 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||| |
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| T |
17939010 |
agctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgatttgtattagccttctatatcaatcattttccacagca |
17938911 |
T |
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| Q |
147 |
taatcctgctaacaaatgttttgaaatcccgattttattgttatttccatatttctcggacatataattttcctctgattccccaaagggagcaatatgt |
246 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17938910 |
aaatcctgccaacaaatgttttgaaatcccgattttattgttatttctatatttctcggacatataattttcctatgattccccaaagggagcaatatgt |
17938811 |
T |
|
| Q |
247 |
catttaatttgatgactc-tttggactgctctttgatttttcttttaactgcttctcttatgtaatggtttaaattgaaatttgttgagttaaataatag |
345 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17938810 |
catttaatttgatgactcttttggactgctctttgatttttcttttaactggttctcttatgtaatggtttaaattgaaatttgttgagttaaataatag |
17938711 |
T |
|
| Q |
346 |
taactttctacaatttcttatcctcattttctttagtcatca |
387 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17938710 |
taactttctacaatttcttatcctcattttctttagtcatca |
17938669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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