View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4532-Insertion-9 (Length: 316)
Name: NF4532-Insertion-9
Description: NF4532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4532-Insertion-9 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 160 - 316
Target Start/End: Complemental strand, 33880087 - 33879931
Alignment:
| Q |
160 |
taaacaaccttagttgaataatttagtgaaggtcaatgataatctctcggtataaagtctttgttttcattcaaaaccaaaaagtcaacctccattgcct |
259 |
Q |
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| T |
33880087 |
taaacaaacttagttcaataatttagtgaaagtcaatgataatctctcggtataaagtctttgttttcattcaaaaccaaaaagtcaacctccattgcct |
33879988 |
T |
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| Q |
260 |
cttgctatattgtaattgttttgacaatgtaaaagatgctaaatacaattcaaacta |
316 |
Q |
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| T |
33879987 |
cttgctatattgtaattgttttgacaatgtaaaagatgctaaatacaattcaaacta |
33879931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 33880470 - 33880375
Alignment:
| Q |
8 |
cacttcacatttaagttcgaatgtatgtaactatga---acttcaaaagaaaaacatgtattttccacactaaaaaaacacacttaatgttttatac |
101 |
Q |
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| T |
33880470 |
cacttcacatttaagttcgaatgtatgttaatatgatgaacttcaaaagaaaaacatgtattttccacactaa-aaaacacacttaatgttttatac |
33880375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 298
Target Start/End: Complemental strand, 33875787 - 33875678
Alignment:
| Q |
186 |
tgaaggtcaatgataatctctcggtataaagtctttgttttcattcaaaaccaaaaagtcaacctccattgcctcttgctatattgtaattgttttgaca |
285 |
Q |
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| T |
33875787 |
tgaaagtcaataataatctctc---atgaattctttgtctccattctaaaccactaagtcaactttcattatctcttgctatcttgtaattgttttgaca |
33875691 |
T |
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| Q |
286 |
atgtaaaagatgc |
298 |
Q |
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| T |
33875690 |
atgtaaaagatgc |
33875678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 33880364 - 33880316
Alignment:
| Q |
117 |
aatgttaacccta---aattttctcataatttcatgttattttttgtaa |
162 |
Q |
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| T |
33880364 |
aatgttaaccctacttaattttctcataatttcatgttatttttcgtaa |
33880316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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