View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4532_low_2 (Length: 249)
Name: NF4532_low_2
Description: NF4532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4532_low_2 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 76 - 249
Target Start/End: Complemental strand, 38984671 - 38984499
Alignment:
| Q |
76 |
gagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgctgaaacccttttacacaggagcaaaagaagacattcc |
175 |
Q |
| |
|
|||||||||||||| ||||| ||||||| ||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38984671 |
gagtttgaattccaattgtgattgtactattagcatgttgcaacctattattcttttacctgctgaagcccttttacacaggagcaaaagaagacattcc |
38984572 |
T |
|
| Q |
176 |
ctggacaactaaggttctaaaacttttggctttgaaataccctttttggaacgggtgatgatgccctctgaatc |
249 |
Q |
| |
|
|| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38984571 |
ct-gacaactaagggtctaaaacttttggttttgaaataccctttttggaacgggtgatgatgccctctgaatc |
38984499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 39 - 249
Target Start/End: Complemental strand, 10583134 - 10582926
Alignment:
| Q |
39 |
tacttggcgatgtctttgggaaactctttttaaaaatgagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgc |
138 |
Q |
| |
|
||||||| ||||||| |||||| ||| |||| | |||||||||||| |||||||||||||||| |||| ||| |||| |||||| || |||| |||| |
|
|
| T |
10583134 |
tacttggtgatgtctatgggaacctcctttttagaatgagtttgaacgccatttgtgtttgtacctttagattgctgcagcctattcttttttt--ctgc |
10583037 |
T |
|
| Q |
139 |
tgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataccctttttggaacgggtgatgatg |
238 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||| |||||||||||||| ||||||||||| || ||||||||| |||||||||||||||||||| |
|
|
| T |
10583036 |
tgaaacccttttacacaggagcgaaggaagacattccctagacaactaaggttccaaaacttttggtttggaaatacccattttggaacgggtgatgatg |
10582937 |
T |
|
| Q |
239 |
ccctctgaatc |
249 |
Q |
| |
|
||||||||||| |
|
|
| T |
10582936 |
ccctctgaatc |
10582926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 129 - 249
Target Start/End: Complemental strand, 357020 - 356900
Alignment:
| Q |
129 |
tttttcctgctgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataccctttttggaacg |
228 |
Q |
| |
|
||||| || ||||||||||||||||||||||| || ||||||||||||| || |||||| |||| ||||||||||| || |||||||||| ||||||||| |
|
|
| T |
357020 |
ttttttcttctgaaacccttttacacaggagcgaaggaagacattccctagataactaatgttccaaaacttttggtttggaaataccctctttggaacg |
356921 |
T |
|
| Q |
229 |
ggtgatgatgccctctgaatc |
249 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
356920 |
ggtgttgatgccctctgaatc |
356900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 130 - 249
Target Start/End: Complemental strand, 16465650 - 16465531
Alignment:
| Q |
130 |
ttttcctgctgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataccctttttggaacgg |
229 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||||||| |||||| || | |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16465650 |
ttttcctgctgaaacccttttatacaagaacaaaagaggacatttactagccaactaaggttctaaaacttttggttttgaaataccctttttggaacga |
16465551 |
T |
|
| Q |
230 |
gtgatgatgccctctgaatc |
249 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
16465550 |
gtgatgatgccctctgaatc |
16465531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 50249155 - 50249243
Alignment:
| Q |
161 |
aaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataccctttttggaacgggtgatgatgccctctgaatc |
249 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
50249155 |
aaaagaagacattccctagacaactaaggttctaaaacttttggttttgaaataccctttttggaacgggtgatgatgccctttgaatc |
50249243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 50248348 - 50248405
Alignment:
| Q |
76 |
gagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattcttttt |
133 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||||| |||||||| ||||| |||||||| |
|
|
| T |
50248348 |
gagtttaaattccatttgtatttgtaccgttagattgttgcagcctatacttcttttt |
50248405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 6762552 - 6762618
Alignment:
| Q |
83 |
aattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgctgaaacccttt |
149 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6762552 |
aattccatttgtgtttgtaccgttagcttgttgcaacctattcttctttttcctgctgaaacccttt |
6762618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 1265396 - 1265462
Alignment:
| Q |
183 |
actaaggttctaaaacttttggctttgaaataccctttttggaacgggtgatgatgccctctgaatc |
249 |
Q |
| |
|
|||| ||||||||||||||||| |||| ||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
1265396 |
actacggttctaaaacttttggttttgtaatgccgtttttagaacgggtgatgatgccctctgaatc |
1265462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University