View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4532_low_4 (Length: 226)
Name: NF4532_low_4
Description: NF4532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4532_low_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 44101532 - 44101313
Alignment:
| Q |
7 |
acacagtcatgtcattaaaaaacttaggaatagtttttcatgattaattcctttgaaacattatcattaaattccaacttaatataagatttgatatata |
106 |
Q |
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| T |
44101532 |
acacagtcatgtcattaaaaaccttaggaatagtttttcacgattaattcctttgaaacattatcattaaattccaacttaatataagatttgatatata |
44101433 |
T |
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| Q |
107 |
cttattatgaaaaccagatacaaatcaataacgttataactcataatatgtggggggacaaagaaaaggttccatccataacctgagataagaatgttga |
206 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44101432 |
cttattatgaaaaccaaatacaaatcaataacgttataactcataatatgtggggggacaaagaaaaggttccatccataccctgagataagaatgttga |
44101333 |
T |
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| Q |
207 |
gcaaaactgtagcaccaaca |
226 |
Q |
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|||||||||||||||||||| |
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| T |
44101332 |
gcaaaactgtagcaccaaca |
44101313 |
T |
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