View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4533-Insertion-1 (Length: 569)
Name: NF4533-Insertion-1
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4533-Insertion-1 |
 | |
|
| [»] scaffold0479 (2 HSPs) |
| | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 183; Significance: 1e-98; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 332 - 561
Target Start/End: Complemental strand, 41481718 - 41481488
Alignment:
| Q |
332 |
agcgtggaaaaccttctcaatatgagaaagg-aaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttc |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41481718 |
agcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc |
41481619 |
T |
|
| Q |
431 |
acccttaggtgaatcgcactacaatatatctctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactctctatgagga |
530 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41481618 |
acccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgagga |
41481519 |
T |
|
| Q |
531 |
tgacttttctcttcataaaggctctgtttct |
561 |
Q |
| |
|
||||||||||||| | |||||||| ||||| |
|
|
| T |
41481518 |
tgacttttctcttgagcaaggctctctttct |
41481488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 332 - 561
Target Start/End: Complemental strand, 36167716 - 36167487
Alignment:
| Q |
332 |
agcgtggaaaaccttctcaatatgagaaagg-aaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttc |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36167716 |
agcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgg-acccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc |
36167618 |
T |
|
| Q |
431 |
acccttaggtgaatcgcactacaatatatctctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactctctatgagga |
530 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36167617 |
acccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgagga |
36167518 |
T |
|
| Q |
531 |
tgacttttctcttcataaaggctctgtttct |
561 |
Q |
| |
|
||||||||||||| | |||||||| ||||| |
|
|
| T |
36167517 |
tgacttttctcttgagcaaggctctctttct |
36167487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 336 - 543
Target Start/End: Original strand, 18951221 - 18951429
Alignment:
| Q |
336 |
tggaaaaccttctcaatatgagaaagg-aaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcaccc |
434 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18951221 |
tggaaaaccttctcaatgtgagaaagggaaaaaaccacgagacctttgggcttcttaaaacttccactataatgataatgggaatacaacaacttcaccc |
18951320 |
T |
|
| Q |
435 |
ttaggtgaatcgcactacaatatatctctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactctctatgaggatgac |
534 |
Q |
| |
|
|||||| ||| ||||| ||| |||||||||||||||||| ||| |||||||||||||||||| |||||| |||| || |||||||||| ||||||||| |
|
|
| T |
18951321 |
ttaggttgatctcactataatttatctctcaatttgtaaggaacactctcacaaattggctcattatttccctcaagagaaaactctctacgaggatgac |
18951420 |
T |
|
| Q |
535 |
ttttctctt |
543 |
Q |
| |
|
||||||||| |
|
|
| T |
18951421 |
ttttctctt |
18951429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 36167809 - 36167758
Alignment:
| Q |
265 |
gggaaatacatgcataattttcctcctccgtgaactcaaaataggcactagc |
316 |
Q |
| |
|
||||||| | |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36167809 |
gggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagc |
36167758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 18951129 - 18951179
Alignment:
| Q |
266 |
ggaaatacatgcataattttcctcctccgtgaactcaaaataggcactagc |
316 |
Q |
| |
|
|||||| | |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18951129 |
ggaaatgcctgcataatttgcctcctccgtgaactcaaaataggcactagc |
18951179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 41481811 - 41481760
Alignment:
| Q |
265 |
gggaaatacatgcataattttcctcctccgtgaactcaaaataggcactagc |
316 |
Q |
| |
|
||||||| | |||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
41481811 |
gggaaatgcctgcataatttccctcctccgtgaactcaaaatagacactagc |
41481760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 183; Significance: 1e-98; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 332 - 561
Target Start/End: Original strand, 4835670 - 4835900
Alignment:
| Q |
332 |
agcgtggaaaaccttctcaatatgagaaagg-aaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttc |
430 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4835670 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttc |
4835769 |
T |
|
| Q |
431 |
acccttaggtgaatcgcactacaatatatctctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactctctatgagga |
530 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4835770 |
acccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgagga |
4835869 |
T |
|
| Q |
531 |
tgacttttctcttcataaaggctctgtttct |
561 |
Q |
| |
|
||||||||||||| | |||||||| ||||| |
|
|
| T |
4835870 |
tgacttttctcttgagcaaggctctctttct |
4835900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 332 - 561
Target Start/End: Original strand, 25857226 - 25857455
Alignment:
| Q |
332 |
agcgtggaaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttca |
431 |
Q |
| |
|
||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25857226 |
agcgtggaaaaccttctcaatgtgagaaaaggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttca |
25857325 |
T |
|
| Q |
432 |
cccttaggtgaatcgcactacaatatatctctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactctctatgaggat |
531 |
Q |
| |
|
|| ||||||| ||| ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
25857326 |
cctttaggtggatctcactacaatatatctcttaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgaggat |
25857425 |
T |
|
| Q |
532 |
gacttttctcttcataaaggctctgtttct |
561 |
Q |
| |
|
|||||||||||| | |||||||| ||||| |
|
|
| T |
25857426 |
gacttttctcttgagcaaggctctctttct |
25857455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 332 - 561
Target Start/End: Original strand, 4842745 - 4842975
Alignment:
| Q |
332 |
agcgtggaaaaccttctcaatatgagaaagg-aaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttc |
430 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
4842745 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacaggacccttgggcctcttaaaacttccactataatgataataggaatacaacaacttc |
4842844 |
T |
|
| Q |
431 |
acccttaggtgaatcgcactacaatatatctctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactctctatgagga |
530 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||| ||||||||||||||| ||||||| |||||||| |
|
|
| T |
4842845 |
acccttaggtggatctcactacaatatatctctcaatttttaaggaacactctcacaaattggctcaatatttctctcacaagaaaactctttatgagga |
4842944 |
T |
|
| Q |
531 |
tgacttttctcttcataaaggctctgtttct |
561 |
Q |
| |
|
||||||||||||| | |||||||| ||||| |
|
|
| T |
4842945 |
tgacttttctcttgagcaaggctctctttct |
4842975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 334 - 542
Target Start/End: Original strand, 24379378 - 24379586
Alignment:
| Q |
334 |
cgtggaaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcacc |
433 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
24379378 |
cgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggatctttgggcctcttaaaacttccactataatgataataggaatacaacaacttcacc |
24379477 |
T |
|
| Q |
434 |
cttaggtgaatcgcactacaatatatctctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactctctatgaggatga |
533 |
Q |
| |
|
|||||||| ||| | |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
24379478 |
cttaggtggatctccctacaatatatctctcaatttgtaaggaacactctcataaattggctcactatttctttcacaagaaaactctctatgaggatga |
24379577 |
T |
|
| Q |
534 |
cttttctct |
542 |
Q |
| |
|
||||||||| |
|
|
| T |
24379578 |
cttttctct |
24379586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 332 - 543
Target Start/End: Original strand, 13465054 - 13465263
Alignment:
| Q |
332 |
agcgtggaaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttca |
431 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||| |
|
|
| T |
13465054 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaccacaggacccttgggcctcttaaaacatccactataatgataatgggaatacaacaagttca |
13465153 |
T |
|
| Q |
432 |
cccttaggtgaatcgcactacaatatatctctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactctctatgaggat |
531 |
Q |
| |
|
|||| ||||| ||| ||||||||| |||||||||||||||||| ||| |||| ||||||||| |||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
13465154 |
ccctcaggtggatctcactacaatgtatctctcaatttgtaaggaacactcttacaaattggttcactatt--tctcacaagaaaacattctatgaggat |
13465251 |
T |
|
| Q |
532 |
gacttttctctt |
543 |
Q |
| |
|
||||||||||| |
|
|
| T |
13465252 |
cacttttctctt |
13465263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 335 - 543
Target Start/End: Complemental strand, 17845951 - 17845741
Alignment:
| Q |
335 |
gtggaaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcaccc |
434 |
Q |
| |
|
||||||||||||| |||| |||| ||||||||| |||| ||||| |||| ||||||||| ||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
17845951 |
gtggaaaaccttcccaatgtgaggaaggaaaaa-ccacaggacctttggacctcttaaa-cttccactataatgataatggaaatacaacaacttcaccc |
17845854 |
T |
|
| Q |
435 |
ttaggtgaatcgcactacaatatatctctcaatttgtaagcaacgctctca----caaattggctcactatttctctcacaaggaaactctctatgagga |
530 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||| |||||| |||||| |||| ||||||||||||||||||||||| ||| |||| |
|
|
| T |
17845853 |
ttaggtgaatctcactacaatatatctctcaatttgtaaggaacactctcataattaaattgactcaatatttctctcacaaggaaactctttattagga |
17845754 |
T |
|
| Q |
531 |
tgacttttctctt |
543 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
17845753 |
tcacttttctctt |
17845741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 361 - 543
Target Start/End: Complemental strand, 4603748 - 4603568
Alignment:
| Q |
361 |
ggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcacccttaggtgaatcgcactacaatatatc |
460 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| ||||||||| ||||||||||| ||| |||||||||||||| |
|
|
| T |
4603748 |
ggaaaaaaccacgggacctttgggcctcttaaaccttccactataatgataatggaaatacaacaactttacccttaggtggatctcactacaatatatc |
4603649 |
T |
|
| Q |
461 |
tctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactctctatgaggatgacttttctctt |
543 |
Q |
| |
|
| |||||||||||| || | || |||||||||||| |||||||||||||||| ||||||| ||||| ||| ||||||||||| |
|
|
| T |
4603648 |
tttcaatttgtaaggaa--cacttacaaattggctctctatttctctcacaagaaaactctttatgaagataacttttctctt |
4603568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 332 - 543
Target Start/End: Original strand, 27341031 - 27341238
Alignment:
| Q |
332 |
agcgtggaaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttca |
431 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||| |||||||||||||| ||||||||| |||| |||| ||||||||||| ||| ||| |||||| |
|
|
| T |
27341031 |
agcgtggaaaaccttctcaatgtaagaaaggaaaaa-ccacgggacccttgtacctcttaaa-cttctactacaatgataatggaaatacaataacttct |
27341128 |
T |
|
| Q |
432 |
cccttaggtgaatcgcactacaatatatctctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactctctatgaggat |
531 |
Q |
| |
|
| |||| || ||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
27341129 |
c--ttagatggatctcactacaatatatctctcaatttgtaaggaacactctcacaggttggctcactatttctctcacaaagaaactctatatgaggat |
27341226 |
T |
|
| Q |
532 |
gacttttctctt |
543 |
Q |
| |
|
||||||||||| |
|
|
| T |
27341227 |
aacttttctctt |
27341238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 334 - 540
Target Start/End: Original strand, 38994159 - 38994345
Alignment:
| Q |
334 |
cgtggaaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcacc |
433 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||| | |||||||||||||| || |||||||||| | |
|
|
| T |
38994159 |
cgtggaaaaccttctcaatgcgagaaagggaaaaaccacgggaccctcgagcctcttaaaactttcattataatgata---------------------c |
38994237 |
T |
|
| Q |
434 |
cttaggtgaatcgcactacaatatatctctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaagg-aaactctctatgaggatg |
532 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||| ||| || ||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
38994238 |
cttaggtggatctcactacaatatatctctcaatttgtaaggaacactatcacaaattggctcattatttctctcacaaggaaaactctctatgaggatt |
38994337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 4842652 - 4842703
Alignment:
| Q |
265 |
gggaaatacatgcataattttcctcctccgtgaactcaaaataggcactagc |
316 |
Q |
| |
|
||||||| | |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4842652 |
gggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagc |
4842703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 336
Target Start/End: Original strand, 25857135 - 25857207
Alignment:
| Q |
265 |
gggaaatacatgcataattttcctcctccgtgaactcaaaataggcactagcaaaaatgtg-aatataagcgt |
336 |
Q |
| |
|
||||||| | |||||||||| ||||||||||||||| ||||||||||||||| ||| ||| ||||||||||| |
|
|
| T |
25857135 |
gggaaatgcctgcataatttccctcctccgtgaacttaaaataggcactagcggaaacgtgaaatataagcgt |
25857207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 4835574 - 4835629
Alignment:
| Q |
260 |
gtgtcgggaaatacatgcataattttcctcctccgtgaactcaaaataggcactag |
315 |
Q |
| |
|
|||| ||||||| | |||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
4835574 |
gtgttgggaaatgcctgcataatttccctcctccatgaactcaaaataggcactag |
4835629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 336
Target Start/End: Complemental strand, 17846034 - 17845974
Alignment:
| Q |
277 |
cataattttcctcctccgtgaactcaaaataggcactagcaaaaatgtg-aatataagcgt |
336 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||| ||| | ||||||| ||||||||||| |
|
|
| T |
17846034 |
cataattttcctcctccgtgaacttaaaattggcattaggagaaatgtgaaatataagcgt |
17845974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 24380159 - 24380113
Alignment:
| Q |
265 |
gggaaatacatgcataattttcctcctccgtgaactcaaaataggca |
311 |
Q |
| |
|
||||||| | |||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
24380159 |
gggaaatgcctgcataatttccctcctctgtgaactcaaaataggca |
24380113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 4e-95; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 332 - 543
Target Start/End: Original strand, 54967307 - 54967519
Alignment:
| Q |
332 |
agcgtggaaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaa-cttccactataatgataatgggaatgcaacaacttc |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
54967307 |
agcgtggaaaaccttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttc |
54967406 |
T |
|
| Q |
431 |
acccttaggtgaatcgcactacaatatatctctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactctctatgagga |
530 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
54967407 |
acccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgagga |
54967506 |
T |
|
| Q |
531 |
tgacttttctctt |
543 |
Q |
| |
|
||||||||||||| |
|
|
| T |
54967507 |
tgacttttctctt |
54967519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 332 - 561
Target Start/End: Original strand, 44782621 - 44782851
Alignment:
| Q |
332 |
agcgtggaaaaccttctcaatatgagaaagg-aaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttc |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44782621 |
agcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaacttc |
44782720 |
T |
|
| Q |
431 |
acccttaggtgaatcgcactacaatatatctctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactctctatgagga |
530 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44782721 |
acccttaggtggatctcactacaatatatctctcaatttgcaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgagga |
44782820 |
T |
|
| Q |
531 |
tgacttttctcttcataaaggctctgtttct |
561 |
Q |
| |
|
||||||||||||| | |||||||| ||||| |
|
|
| T |
44782821 |
tgacttttctcttgagcaaggctctctttct |
44782851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 336 - 543
Target Start/End: Original strand, 54979943 - 54980151
Alignment:
| Q |
336 |
tggaaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaa-cttccactataatgataatgggaatgcaacaacttcaccc |
434 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54979943 |
tggaaaaccttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcaccc |
54980042 |
T |
|
| Q |
435 |
ttaggtgaatcgcactacaatatatctctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactctctatgaggatgac |
534 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
54980043 |
ttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcgctatttctctcacaagaaaactctctatgaggatgac |
54980142 |
T |
|
| Q |
535 |
ttttctctt |
543 |
Q |
| |
|
||||||||| |
|
|
| T |
54980143 |
ttttctctt |
54980151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 339 - 541
Target Start/End: Complemental strand, 39298895 - 39298696
Alignment:
| Q |
339 |
aaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcacccttag |
438 |
Q |
| |
|
|||||||||||||| ||| ||||||||| | |||||||||||| |||||||||| |||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
39298895 |
aaaaccttctcaatgtgatgaaggaaaaatc-acgggacccttgtgcctcttaaa-cttccactataatgataaagggaatacaacaacttcacccttag |
39298798 |
T |
|
| Q |
439 |
gtgaatcgcactacaatatatctctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactctctatgaggatgactttt |
538 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| | ||||||| |||||||| |||||| |
|
|
| T |
39298797 |
gtggatctaactacaatatatctctcaatttgtaag-gacactctcacaaattggctcactatttctctcacaaaggaactctccatgaggatcactttt |
39298699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 332 - 543
Target Start/End: Complemental strand, 17645887 - 17645685
Alignment:
| Q |
332 |
agcgtggaaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttca |
431 |
Q |
| |
|
||||||||||||||||||||||| | ||| |||||||||||||| |||| || ||||||| |||||||||||||||||||| ||| ||||||| |
|
|
| T |
17645887 |
agcgtggaaaaccttctcaatataaaaaa---aaaaaccacgggactcttgagcgtcttaaa-cttccactataatgataatgacaatacaacaac---- |
17645796 |
T |
|
| Q |
432 |
cccttaggtgaatcgcactacaatatatctctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactctctatgaggat |
531 |
Q |
| |
|
|| |||||| ||| |||||||| |||||||||||||||||| ||| |||| ||||||||||||||||||| ||||||||||||||||| |||||| || |
|
|
| T |
17645795 |
-ccctaggtggatctcactacaacgtatctctcaatttgtaaggaacactcttacaaattggctcactatttatctcacaaggaaactctttatgagaat |
17645697 |
T |
|
| Q |
532 |
gacttttctctt |
543 |
Q |
| |
|
||||| ||||| |
|
|
| T |
17645696 |
cactttcctctt |
17645685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 332 - 455
Target Start/End: Original strand, 18556400 - 18556523
Alignment:
| Q |
332 |
agcgtggaaaaccttctcaatatgagaaagg-aaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttc |
430 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||| | |||||||||| ||||||||||||||| |||| |||| |||||||||| |
|
|
| T |
18556400 |
agcgtggaaaaccttctcaatctgagaaaggcaaaaaaccacgggaccctcgagcctcttaaa-cttccactataatgacaatgagaatacaacaacttc |
18556498 |
T |
|
| Q |
431 |
acccttaggtgaatcgcactacaat |
455 |
Q |
| |
|
||||||||||| ||| || |||||| |
|
|
| T |
18556499 |
acccttaggtggatctcattacaat |
18556523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 332 - 419
Target Start/End: Complemental strand, 50603314 - 50603229
Alignment:
| Q |
332 |
agcgtggaaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaat |
419 |
Q |
| |
|
||||||||||||||||||||| |||| || ||||||||||||| |||| | ||||||||||| | ||||||||||| ||||||||||| |
|
|
| T |
50603314 |
agcgtggaaaaccttctcaatgtgagtaa-gaaaaaaccacggaacccgtaggcctcttaaatc-tccactataataataatgggaat |
50603229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 44782528 - 44782579
Alignment:
| Q |
265 |
gggaaatacatgcataattttcctcctccgtgaactcaaaataggcactagc |
316 |
Q |
| |
|
||||||| | |||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
44782528 |
gggaaatgcctgcataatttccctcctccgtgaactcaaaatagacactagc |
44782579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 54967214 - 54967265
Alignment:
| Q |
265 |
gggaaatacatgcataattttcctcctccgtgaactcaaaataggcactagc |
316 |
Q |
| |
|
||||||| | |||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
54967214 |
gggaaatgcctgcataatttccctcctccgtcaactcaaaataggcactagc |
54967265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 54979856 - 54979897
Alignment:
| Q |
275 |
tgcataattttcctcctccgtgaactcaaaataggcactagc |
316 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| |||||||| |
|
|
| T |
54979856 |
tgcataatttccctcctccgtcaactcaaaataagcactagc |
54979897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 336
Target Start/End: Original strand, 18556321 - 18556381
Alignment:
| Q |
277 |
cataattttcctcctccgtgaactcaaaataggcactagcaaaaatgtg-aatataagcgt |
336 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| || |||| ||| ||| ||||||||||| |
|
|
| T |
18556321 |
cataatttgcctcctccatgaactcaaaataggtaccagcagaaacgtgaaatataagcgt |
18556381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 175; Significance: 6e-94; HSPs: 2)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 332 - 537
Target Start/End: Complemental strand, 2839 - 2633
Alignment:
| Q |
332 |
agcgtggaaaaccttctcaatatgagaaagg-aaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttc |
430 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2839 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc |
2740 |
T |
|
| Q |
431 |
acccttaggtgaatcgcactacaatatatctctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactctctatgagga |
530 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2739 |
acccttaggtggatctcactacaatatatctctcaatttgtaaggaacgctctcacaaattggctcactatttctctcacaagaaaactctctatgagga |
2640 |
T |
|
| Q |
531 |
tgacttt |
537 |
Q |
| |
|
||||||| |
|
|
| T |
2639 |
tgacttt |
2633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 336
Target Start/End: Complemental strand, 2932 - 2860
Alignment:
| Q |
265 |
gggaaatacatgcataattttcctcctccgtgaactcaaaataggcactagcaaaaatgtg-aatataagcgt |
336 |
Q |
| |
|
||||||| |||||||||||| ||| ||||||||||||||||||| ||||||| ||| ||| ||||||||||| |
|
|
| T |
2932 |
gggaaatgcatgcataatttcccttctccgtgaactcaaaatagacactagcggaaacgtgaaatataagcgt |
2860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 163; Significance: 9e-87; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 332 - 561
Target Start/End: Original strand, 342312 - 342542
Alignment:
| Q |
332 |
agcgtggaaaaccttctcaatatgagaaa-ggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttc |
430 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
342312 |
agcgtgaaaaaccttctcaatatgagaaatggaagaaaccacgggatccttgggcctcttaaaacttccactataatgataatgggaatacaacaatttc |
342411 |
T |
|
| Q |
431 |
acccttaggtgaatcgcactacaatatatctctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactctctatgagga |
530 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
342412 |
acccttaggtgtatctgactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgagga |
342511 |
T |
|
| Q |
531 |
tgacttttctcttcataaaggctctgtttct |
561 |
Q |
| |
|
||||||||||||| | |||||||| ||||| |
|
|
| T |
342512 |
tgacttttctcttgagcaaggctctctttct |
342542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 336
Target Start/End: Original strand, 342231 - 342293
Alignment:
| Q |
275 |
tgcataattttcctcctccgtgaactcaaaataggcactagcaaaaatgtg-aatataagcgt |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| |
|
|
| T |
342231 |
tgcataattttcctcctccgtgaactcaaaataggcactagcagaaacgtgaaatataagcgt |
342293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 3e-83; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 332 - 561
Target Start/End: Original strand, 9757309 - 9757540
Alignment:
| Q |
332 |
agcgtggaaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaa--cttccactataatgataatgggaatgcaacaactt |
429 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9757309 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaaaacttccactataatgataatgggaatacaacaactt |
9757408 |
T |
|
| Q |
430 |
cacccttaggtgaatcgcactacaatatatctctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactctctatgagg |
529 |
Q |
| |
|
|||||||||||| ||| ||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| ||||||||||||| | |
|
|
| T |
9757409 |
cacccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcaaaagaaaactctctatgaag |
9757508 |
T |
|
| Q |
530 |
atgacttttctcttcataaaggctctgtttct |
561 |
Q |
| |
|
||||||| |||||| | |||||||| ||||| |
|
|
| T |
9757509 |
atgacttctctcttgagcaaggctctctttct |
9757540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 332 - 543
Target Start/End: Original strand, 42682930 - 42683140
Alignment:
| Q |
332 |
agcgtggaaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttca |
431 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42682930 |
agcgtggaaaaccttctcaatgtgagaaaggaaaaatc-acgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaacttca |
42683028 |
T |
|
| Q |
432 |
cccttaggtgaatcgcactacaatatatctctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactctctatgaggat |
531 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
42683029 |
cccttaggtgcatctcactacaatatatctctcaatttgtaaggaacactcttacaaattggctcactatttctctcacaagaaaactctttgtgaggat |
42683128 |
T |
|
| Q |
532 |
gacttttctctt |
543 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
42683129 |
gagttttctctt |
42683140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 336 - 527
Target Start/End: Original strand, 37286984 - 37287174
Alignment:
| Q |
336 |
tggaaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaactt-caccc |
434 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| | ||||||||||| || ||||||| ||||||||||||| ||||| |||| ||||||||| ||||| |
|
|
| T |
37286984 |
tggaaaaccttctcaatgtgaaaaaggaaaaatc-acgggacccttaagcatcttaaa-cttccactataataataataagaatacaacaactttcaccc |
37287081 |
T |
|
| Q |
435 |
ttaggtgaatcgcactacaatatatctctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactctctatga |
527 |
Q |
| |
|
|||| || | | |||||||||||||||||||||||||||| ||| | ||||||| |||||||| ||||||||| ||||||| ||||||||| |
|
|
| T |
37287082 |
ttagatggagctcactacaatatatctctcaatttgtaaggaacattaacacaaatcggctcactgtttctctcagaaggaaattctctatga |
37287174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 336
Target Start/End: Original strand, 9757226 - 9757288
Alignment:
| Q |
275 |
tgcataattttcctcctccgtgaactcaaaataggcactagcaaaaatgtg-aatataagcgt |
336 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||| ||| ||| ||||||||||| |
|
|
| T |
9757226 |
tgcataatttccttcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgt |
9757288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 54147115 - 54147053
Alignment:
| Q |
195 |
aaaggagtgacaagaacaaagaaaagttaaattatgaagactcacaaatttctcaaatgttga |
257 |
Q |
| |
|
|||||| |||| |||||||||||||| ||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
54147115 |
aaaggattgactagaacaaagaaaagcctaattacgaacactcacaaatttcccaaatgttga |
54147053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 3e-68; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 265 - 543
Target Start/End: Complemental strand, 16698666 - 16698387
Alignment:
| Q |
265 |
gggaaatacatgcataattttcctcctccgtgaactcaaaataggcactagc----aaaaatgtgaatataagcgtggaaaaccttctcaatatgagaaa |
360 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||||||||| ||||||||||||| | ||| |||| | || ||||||| |||||||||| ||||||| |
|
|
| T |
16698666 |
gggaaatatatgcataatttccatcctccgtgaactcagaataggcactagcggaaacaaaaaagaattttagtgtggaaatccttctcaatgtgagaaa |
16698567 |
T |
|
| Q |
361 |
ggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcacccttaggtgaatcgcactacaatatatc |
460 |
Q |
| |
|
|| ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| ||||||||| |||| |
|
|
| T |
16698566 |
gggaaaaattatgggacccttggacctcttaaaacttccactataatgataatgggaat---acaacttcacccttatgtggatctcactacaatgtatc |
16698470 |
T |
|
| Q |
461 |
tctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactctctatgaggatgacttttctctt |
543 |
Q |
| |
|
|||||||||||||| ||| ||||||| |||||| || ||||||||| |||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
16698469 |
tctcaatttgtaagaaacactctcacgaattgggtccctatttctcccacaagaaaactctctatgaggatcacttttctctt |
16698387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 336 - 450
Target Start/End: Original strand, 22763915 - 22764029
Alignment:
| Q |
336 |
tggaaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcaccct |
435 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||| || |
|
|
| T |
22763915 |
tggaaaaccttctcaatatgagaaagggaaaaaccacgggaccattgggcctcttaaaacttatgctataatgataatgggaatacaacaacttcactct |
22764014 |
T |
|
| Q |
436 |
taggtgaatcgcact |
450 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
22764015 |
taggtgaatctcact |
22764029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 441
Target Start/End: Complemental strand, 33808126 - 33808020
Alignment:
| Q |
332 |
agcgtggaaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttca |
431 |
Q |
| |
|
||||||||||||||||||||| |||| |||| |||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||| ||| | ||||| |
|
|
| T |
33808126 |
agcgtggaaaaccttctcaatgtgagtaagg-aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttca |
33808030 |
T |
|
| Q |
432 |
cccttaggtg |
441 |
Q |
| |
|
|||| ||||| |
|
|
| T |
33808029 |
ccctcaggtg |
33808020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 441
Target Start/End: Complemental strand, 33811780 - 33811674
Alignment:
| Q |
332 |
agcgtggaaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttca |
431 |
Q |
| |
|
||||||||||||||||||||| |||| |||| |||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||| ||| | ||||| |
|
|
| T |
33811780 |
agcgtggaaaaccttctcaatgtgagtaagg-aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttca |
33811684 |
T |
|
| Q |
432 |
cccttaggtg |
441 |
Q |
| |
|
|||| ||||| |
|
|
| T |
33811683 |
ccctcaggtg |
33811674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 441
Target Start/End: Complemental strand, 33816698 - 33816592
Alignment:
| Q |
332 |
agcgtggaaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttca |
431 |
Q |
| |
|
||||||||||||||||||||| |||| |||| |||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||| ||| | ||||| |
|
|
| T |
33816698 |
agcgtggaaaaccttctcaatgtgagtaagg-aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttca |
33816602 |
T |
|
| Q |
432 |
cccttaggtg |
441 |
Q |
| |
|
|||| ||||| |
|
|
| T |
33816601 |
ccctcaggtg |
33816592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 33808209 - 33808161
Alignment:
| Q |
265 |
gggaaatacatgcataattttcctcctccgtgaactcaaaataggcact |
313 |
Q |
| |
|
||||||| | |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33808209 |
gggaaatgcctgcataatttccctcctccgtgaactcaaaataggcact |
33808161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 33811863 - 33811815
Alignment:
| Q |
265 |
gggaaatacatgcataattttcctcctccgtgaactcaaaataggcact |
313 |
Q |
| |
|
||||||| | |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33811863 |
gggaaatgcctgcataatttccctcctccgtgaactcaaaataggcact |
33811815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 33816781 - 33816733
Alignment:
| Q |
265 |
gggaaatacatgcataattttcctcctccgtgaactcaaaataggcact |
313 |
Q |
| |
|
||||||| | |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33816781 |
gggaaatgcctgcataatttccctcctccgtgaactcaaaataggcact |
33816733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 332 - 561
Target Start/End: Complemental strand, 37038031 - 37037804
Alignment:
| Q |
332 |
agcgtggaaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttca |
431 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||| ||| |||||||| ||||||| |||| ||||||||||| |
|
|
| T |
37038031 |
agcgaggaaaaccttctcaatgtgagaaaggagaaa-ccacgggacccttgggcctcttaaa-ctttcactataacgataatgagaatacaacaacttca |
37037934 |
T |
|
| Q |
432 |
cccttaggtgaatcgcactacaatatatctctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactctctatgaggat |
531 |
Q |
| |
|
| |||||||| ||| || |||||| | |||||||||| |||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37037933 |
ctcttaggtggatctcattacaatctgactctcaatttataagaaacactctcacaaattggctcactatttctctcacaagaaaactctctatgaggat |
37037834 |
T |
|
| Q |
532 |
gacttttctcttcataaaggctctgtttct |
561 |
Q |
| |
|
||||||||||| | |||||||| ||||| |
|
|
| T |
37037833 |
cacttttctcttgagcaaggctctctttct |
37037804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 37038112 - 37038066
Alignment:
| Q |
275 |
tgcataattttcctcctccgtgaactcaaaataggcactagcaaaaa |
321 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
37038112 |
tgcataatttctctcctccgtgaactcaaaataggcactagcgaaaa |
37038066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 333 - 543
Target Start/End: Complemental strand, 27642218 - 27642009
Alignment:
| Q |
333 |
gcgtggaaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcac |
432 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||| |||||| ||| ||| |||||||| ||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
27642218 |
gcgtgtaaaaccttctcaatgtgagaaaggaaaaaatcacggggtcctcgggtctcttaaa-cttccactataataataatgggaataaaacaacttcat |
27642120 |
T |
|
| Q |
433 |
ccttaggtgaatcgcactacaatatatctctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactctctatgaggatg |
532 |
Q |
| |
|
| ||| ||| ||| |||||||||||||||||| ||||||||| ||| ||||||||||||| || |||||||||||| ||||||||| | || |||||| |
|
|
| T |
27642119 |
ctttaagtggatctcactacaatatatctctctatttgtaaggaacactctcacaaattgacttcctatttctctcaaaaggaaactttttacgaggatc |
27642020 |
T |
|
| Q |
533 |
acttttctctt |
543 |
Q |
| |
|
||||||||||| |
|
|
| T |
27642019 |
acttttctctt |
27642009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 5e-48; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 332 - 441
Target Start/End: Complemental strand, 22981615 - 22981506
Alignment:
| Q |
332 |
agcgtggaaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttca |
431 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
22981615 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttca |
22981516 |
T |
|
| Q |
432 |
cccttaggtg |
441 |
Q |
| |
|
|||||||||| |
|
|
| T |
22981515 |
cccttaggtg |
22981506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 332 - 441
Target Start/End: Original strand, 23806793 - 23806902
Alignment:
| Q |
332 |
agcgtggaaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttca |
431 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23806793 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttca |
23806892 |
T |
|
| Q |
432 |
cccttaggtg |
441 |
Q |
| |
|
|||||||||| |
|
|
| T |
23806893 |
cccttaggtg |
23806902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 419
Target Start/End: Original strand, 31152018 - 31152101
Alignment:
| Q |
335 |
gtggaaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaat |
419 |
Q |
| |
|
|||||||||||||||||| |||| ||| |||||||||||||| || | ||||||||||| | ||||||||||| ||||||||||| |
|
|
| T |
31152018 |
gtggaaaaccttctcaatgtgagtaagaaaaaaaccacgggatccgtaggcctcttaaatc-tccactataataataatgggaat |
31152101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 316
Target Start/End: Complemental strand, 22981696 - 22981655
Alignment:
| Q |
275 |
tgcataattttcctcctccgtgaactcaaaataggcactagc |
316 |
Q |
| |
|
|||||||||| || ||||||||||||||||| |||||||||| |
|
|
| T |
22981696 |
tgcataatttcccccctccgtgaactcaaaacaggcactagc |
22981655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 23806712 - 23806753
Alignment:
| Q |
275 |
tgcataattttcctcctccgtgaactcaaaataggcactagc |
316 |
Q |
| |
|
|||||||||| || ||||||||||||||||| |||||||||| |
|
|
| T |
23806712 |
tgcataatttcccccctccgtgaactcaaaacaggcactagc |
23806753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 31151930 - 31151978
Alignment:
| Q |
265 |
gggaaatacatgcataattttcctcctccgtgaactcaaaataggcact |
313 |
Q |
| |
|
||||||| | |||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
31151930 |
gggaaatgcctgcataatttccctcctctctgaactcaaaataggcact |
31151978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 335 - 543
Target Start/End: Original strand, 26588 - 26795
Alignment:
| Q |
335 |
gtggaaaaccttctcaatatgagaaaggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcaccc |
434 |
Q |
| |
|
|||||||||||| ||||| |||| ||||||||| | ||||||||||||||||||||||| |||||||| ||||||||| | |||| |||| ||| ||||| |
|
|
| T |
26588 |
gtggaaaaccttttcaatgtgagtaaggaaaaa-ctacgggacccttgggcctcttaaa-cttccactctaatgataacgagaatacaactactccaccc |
26685 |
T |
|
| Q |
435 |
ttaggtgaatcgcactacaatatatctctcaatttgtaagcaacgctctcacaaattggctcactatttctctcacaaggaaactct--ctatgaggatg |
532 |
Q |
| |
|
||||||| ||| ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||| |||||||| ||||||| ||||| |||| |
|
|
| T |
26686 |
ttaggtggatctcactacaatttatctctcaatttgtaaggaacactctcacaaattggctcactattt-tctcacaaaaaaactctagctatgcggatc |
26784 |
T |
|
| Q |
533 |
acttttctctt |
543 |
Q |
| |
|
|||||| |||| |
|
|
| T |
26785 |
acttttatctt |
26795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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