View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4533-Insertion-3 (Length: 391)
Name: NF4533-Insertion-3
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4533-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 23701662 - 23701381
Alignment:
| Q |
8 |
cttggagcggtttggaacacttcaagagttgagctagggtttattgttgctattttcggccttggaactgttaaaaagagaaaattgtggtgacatgaag |
107 |
Q |
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| T |
23701662 |
cttggagcggtttggaacacttcaagagttgagctagggtttattgttgctattttcggccttggaactgttaaaaagagaaaattgtggtgacatgaag |
23701563 |
T |
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| Q |
108 |
gggaattcatcatcctctacaatacacgatcatcaaaatttagtagatgatatctccctcttagtctttcatgatcatgatgaagaaatttttcaattat |
207 |
Q |
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| T |
23701562 |
gggaattcatcatcctctacaacacatgatgatcaaaatttagtagatgatatctccctcttagccctacatgatcatgatgaagaaatttttcgattat |
23701463 |
T |
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| Q |
208 |
gtgatgagacatatgcagaagaattacaaatacaagaagcattattattttccactcttggggcaaatactactatagatgt |
289 |
Q |
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| T |
23701462 |
gtgatgagacatatgcagaagaattacaaatacaagaagcattattattttccgctcttatgtcaaatactactatagatgt |
23701381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 182 - 289
Target Start/End: Original strand, 23694327 - 23694434
Alignment:
| Q |
182 |
tcatgatgaagaaatttttcaattatgtgatgagacatatgcagaagaattacaaatacaagaagcattattattttccactcttggggcaaatactact |
281 |
Q |
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| T |
23694327 |
tcatgataaagaaatttttcgaatatctgaagagacatatgcagaggaattacaaatacaagaagcattattattttccactcttatgtcaaatactact |
23694426 |
T |
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| Q |
282 |
atagatgt |
289 |
Q |
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| T |
23694427 |
atagatgt |
23694434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 353 - 391
Target Start/End: Complemental strand, 23701323 - 23701285
Alignment:
| Q |
353 |
ggcttttgtaggtgaatattctttgtcgccgtcttattc |
391 |
Q |
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| T |
23701323 |
ggcttttgtaggtgaatattctttgtcgccgtcttattc |
23701285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 39691391 - 39691323
Alignment:
| Q |
11 |
ggagcggtttggaacacttcaagagttgagctagggtttattgttgctattttcggccttggaactgtt |
79 |
Q |
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| T |
39691391 |
ggagctgtctggaacactgcaaaagttgagccagggtccattgttgctattttcggtcttggaactgtt |
39691323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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