View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4533_high_16 (Length: 327)

Name: NF4533_high_16
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4533_high_16
NF4533_high_16
[»] chr3 (5 HSPs)
chr3 (20-317)||(47193463-47193760)
chr3 (182-316)||(9792564-9792698)
chr3 (142-209)||(47212255-47212322)
chr3 (79-200)||(26737017-26737138)
chr3 (160-200)||(26713862-26713902)
[»] chr7 (7 HSPs)
chr7 (176-317)||(6609317-6609458)
chr7 (176-317)||(6624663-6624804)
chr7 (139-253)||(21130440-21130554)
chr7 (142-218)||(18658605-18658681)
chr7 (142-209)||(29213017-29213084)
chr7 (139-193)||(21098712-21098766)
chr7 (139-253)||(21123312-21123426)
[»] chr4 (1 HSPs)
chr4 (139-200)||(39132235-39132296)
[»] chr1 (1 HSPs)
chr1 (156-193)||(11791111-11791148)


Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 317
Target Start/End: Complemental strand, 47193760 - 47193463
Alignment:
Q  20 ccatataacctcttgtccctcttattcttgaaaaagcagaactatcacgttcatctctattcaatagttttgataaaccaaaatcagcaacctttggttg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193760 ccatataacctcttgtccctcttattcttgaaaaagcagaactatcacgttcatctctattcaatagttttgataaaccaaaatcagcaacctttggttg 47193661  T
Q  120 aaaatttgtgtcaagtaaaatattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttcca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193660 aaaatttgtgtcaagtaaaatattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttcca 47193561  T
Q  220 acagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193560 acagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatg 47193463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 182 - 316
Target Start/End: Complemental strand, 9792698 - 9792564
Alignment:
Q  182 actcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaaga 281  Q
    |||||||| |||||||||| |||||||||| |||| ||||| |||  ||||| |||||||||||||||| |||||||||||||||||||||  |||| ||    
T  9792698 actcttcaagtaaataagcgaaacctttagttgttgcaacaactatcttaaatctcttattccaatcaactgaattagaacatagattctcaactaatga 9792599  T
Q  282 accatgttctatatactcatagaccaaaagcctat 316  Q
    ||||||||| ||||||||||| |||||||| ||||    
T  9792598 accatgttccatatactcataaaccaaaagtctat 9792564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 47212255 - 47212322
Alignment:
Q  142 ttttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaaccttt 209  Q
    ||||| || |||||||||||||| |||| ||| ||||||||||||||||| | |||||||||||||||    
T  47212255 ttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcatggatataagccaaaccttt 47212322  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 26737017 - 26737138
Alignment:
Q  79 ttcaatagttttgataaaccaaaatcagcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcacaatgtaaaacccattcca 178  Q
    |||||||| || || ||||||||||| |||||||| ||| || |||  | |||||  |  || ||||| || || | ||| ||||| |||| ||| ||||    
T  26737017 ttcaatagcttagacaaaccaaaatctgcaaccttaggtcgataatcagagtcaacaagtatgttttgcggctttatatcgcaatgcaaaatccactcca 26737116  T
Q  179 aacactcttcatgtaaataagc 200  Q
    ||||||||||||||||||||||    
T  26737117 aacactcttcatgtaaataagc 26737138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 26713862 - 26713902
Alignment:
Q  160 caatgtaaaacccattccaaacactcttcatgtaaataagc 200  Q
    ||||| |||| ||| ||||||||||||||||||||||||||    
T  26713862 caatgcaaaatccactccaaacactcttcatgtaaataagc 26713902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 176 - 317
Target Start/End: Original strand, 6609317 - 6609458
Alignment:
Q  176 ccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgc 275  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||  |    
T  6609317 ccaaacactcttcatgtacataaaccaaacctttagctgttgcaacaactacattaaatctcttattccaatcaagtgaattagaacatagattctcaac 6609416  T
Q  276 taaagaaccatgttctatatactcatagaccaaaagcctatg 317  Q
    ||| ||||||||||| ||||||||||| |||| |||||||||    
T  6609417 taatgaaccatgttccatatactcataaaccagaagcctatg 6609458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 176 - 317
Target Start/End: Complemental strand, 6624804 - 6624663
Alignment:
Q  176 ccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgc 275  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||  |    
T  6624804 ccaaacactcttcatgtacataaaccaaacctttagctgttgcaacaactacattaaatctcttattccaatcaagtgaattagaacatagattctcaac 6624705  T
Q  276 taaagaaccatgttctatatactcatagaccaaaagcctatg 317  Q
    ||| |||||||||||  |||||||||| |||| |||||||||    
T  6624704 taatgaaccatgttccgtatactcataaaccagaagcctatg 6624663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 21130440 - 21130554
Alignment:
Q  139 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctct 238  Q
    ||||||||||| || | ||||||||| |||| |||||||||||| |||||||||| ||| || ||| || |||||||||| | ||| | || | |||| |    
T  21130440 atattttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagatatgctaaaactctagctgttcctaaagcaatatcataccttt 21130539  T
Q  239 tattccaatcaagtg 253  Q
    || ||||||||||||    
T  21130540 tagtccaatcaagtg 21130554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 18658605 - 18658681
Alignment:
Q  142 ttttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttcc 218  Q
    |||||||| || | ||||||||| |||| |||||||||||| |||||||||| |||||| | | |||||||||||||    
T  18658605 ttttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagataagctagaactttagctgttcc 18658681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 29213017 - 29213084
Alignment:
Q  142 ttttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaaccttt 209  Q
    ||||| || |||||||||||||| |||| ||| ||||||||||||||||  | |||||||||||||||    
T  29213017 ttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcataaatataagccaaaccttt 29213084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 21098766 - 21098712
Alignment:
Q  139 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgta 193  Q
    |||||||| || || | |||||||||||||| |||||||||||| ||||||||||    
T  21098766 atattttgcggctttatatcacaatgtaaaatccattccaaacattcttcatgta 21098712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 21123312 - 21123426
Alignment:
Q  139 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctct 238  Q
    ||||||||||| || | ||||||||| |||| ||| |||| ||| |||||||||| |||||| | | || |||||||||| | ||| | || | |||| |    
T  21123312 atattttgaggctttatatcacaatgcaaaatccactccatacattcttcatgtagataagcaagaactctagctgttcctaaagcaatatcataccttt 21123411  T
Q  239 tattccaatcaagtg 253  Q
    || ||||||||||||    
T  21123412 tactccaatcaagtg 21123426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 39132296 - 39132235
Alignment:
Q  139 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagc 200  Q
    ||||||||||| || | |||||||||||||| ||| |||||||| |||||||||| ||||||    
T  39132296 atattttgaggctttatatcacaatgtaaaatccactccaaacattcttcatgtagataagc 39132235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 11791111 - 11791148
Alignment:
Q  156 atcacaatgtaaaacccattccaaacactcttcatgta 193  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  11791111 atcacaatgcaaaacccattccaaacactcctcatgta 11791148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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