View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4533_high_17 (Length: 319)
Name: NF4533_high_17
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4533_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 6e-74; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 9818143 - 9817988
Alignment:
| Q |
18 |
catgcagacaaccgttctttgccatttgataaattatcaagccatctatacgatcaaggctaatgcattaatcaatgtctctaaaatatctttgaaaaca |
117 |
Q |
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| T |
9818143 |
catgcagacaaccgttctttgccatttgataaattatcaagccatctatacgatcaaggctaatgcattaatcaatgtctctaaaatatctttgaaaaca |
9818044 |
T |
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| Q |
118 |
ttcatcatcc--ttgcaatagttgcagatagctattgtaaagcagtcatcgaatcc |
171 |
Q |
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| T |
9818043 |
ttcatcatccttttgcaatagttgcagatagctgttgtaaagcagtcatcgaatcc |
9817988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 169 - 311
Target Start/End: Complemental strand, 9817617 - 9817475
Alignment:
| Q |
169 |
tcccttgtgcaggtttcaagattcaaaatagacattgtcacaaatttcagcacaaaccaactcatttagacattgcaaaatgaaaatcattaacttccct |
268 |
Q |
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| T |
9817617 |
tcccttgtgcaggtttcaagattcaaaatagacattgtcacaaatttcagcacaaaccaactcatttagacattgcaaaatgaaaatcattaacttccct |
9817518 |
T |
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| Q |
269 |
acaaccaaaacaattctcaatatttgatccttgatagtattat |
311 |
Q |
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| T |
9817517 |
acaaccaaaaaaattctcaatatttgatccttgatagtattat |
9817475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 25 - 145
Target Start/End: Original strand, 9855439 - 9855559
Alignment:
| Q |
25 |
acaaccgttctttgccatttgataaattatcaagccatctatacgatcaaggctaatgcattaatcaatgtctctaaaatatctttgaaaacattcatca |
124 |
Q |
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| T |
9855439 |
acaaccgttctttgccatttgataaattatcaagccatctatatgatcaaggctaatgcattaatcaacgtctctaaaatatctttgaaaacattcatca |
9855538 |
T |
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| Q |
125 |
tccttgcaatagttgcagata |
145 |
Q |
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| T |
9855539 |
tccttgcaatagttgcagata |
9855559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 183 - 311
Target Start/End: Complemental strand, 24351019 - 24350891
Alignment:
| Q |
183 |
ttcaagattcaaaatagacattgtcacaaatttcagcacaaaccaactcatttagacattgcaaaatgaaaatcattaacttccctacaaccaaaacaat |
282 |
Q |
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| T |
24351019 |
ttcaaggttcaaaatagatattgtcacaaatt-cagcacaaaccaactcatttagtcattgcaaaatgaaaatcattaacttctctacaaccaaaacaat |
24350921 |
T |
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| Q |
283 |
tctcaatatttgatcc-ttgatagtattat |
311 |
Q |
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| T |
24350920 |
tatcaatatttgatcctttgatagtattat |
24350891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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