View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4533_high_2 (Length: 657)
Name: NF4533_high_2
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4533_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 629; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 3 - 647
Target Start/End: Complemental strand, 52647091 - 52646447
Alignment:
| Q |
3 |
cgaatagtaaaagttatttttggaaatctgaaaaataaattcatagaaggcaaccaaccatgtagtaattcacatacgagccacccttctgaatgaaacg |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52647091 |
cgaatagtaaaagttatttttggaaatctgaaaaataaattcatagaaggcaaccaaccatgtagtaattcacatacgagccacccttctgaatgaaacg |
52646992 |
T |
|
| Q |
103 |
agcaactgcaaatgctagatcctgaactggtcgctggtgaattgggccaccaaaatctgtaaaccttatgatcatggagaatagaaagaaagagatcaga |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52646991 |
agcaactgcaaatgctagatcctgaactggtcgctggtgaattgggccaccaaaatctgtaaaccttatgatcatggagaatagaaagaaagagatcaga |
52646892 |
T |
|
| Q |
203 |
agaataaaagggtgaagaaattaaacaattatatctaacatcataacaatatatagcttaccagccactccaagactcagtccacatgctaggcttatat |
302 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52646891 |
agaataaaagggtgaagaaattagacaattatatctaacatcagaacaatatatagcttaccagccactccaagactcggtccacatgctaggcttatat |
52646792 |
T |
|
| Q |
303 |
ggtgtatttggagagaaatcatcacagtaaaaaccattacatgaattaatctgtagtggagaattggatggatcatattcaaccctcaataagtatataa |
402 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52646791 |
ggtttatttggagagaaatcatcacagtaaaaaccattacatgaattaatctgtagtggagaattggatggatcatattcaaccctcaataagtatataa |
52646692 |
T |
|
| Q |
403 |
tgatggtgagcctaaatatagagcttgagactcgataatttcaattcttgaactcaatcaatcgcccttaagtgtgacagctgaagcaaatgagttaacc |
502 |
Q |
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| T |
52646691 |
tgatggtgagcctaaatatagagcttgagactcgataatttcaattcttgaactcaatcaatcgcccttaagtgtgacagctgaagcaaatgagttaacc |
52646592 |
T |
|
| Q |
503 |
aagagaatgaaagagctcaccacaggatctggggcatcattttccttgcacatcacccaagggactcctgttcccaatccaacagccatatttgcagccc |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52646591 |
aagagaatgaaagagctcaccacaggatctggggcatcattttccttgcacatcacccaagggactcctgttcccaatccaacagccatatttgcagccc |
52646492 |
T |
|
| Q |
603 |
agtttaggtatgcatgaccagcagctcctgttgccctgctctctg |
647 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52646491 |
agtttaggtatgcatgaccagcagctcctgttgccctgctctctg |
52646447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 5e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 518 - 630
Target Start/End: Complemental strand, 7345384 - 7345272
Alignment:
| Q |
518 |
ctcaccacaggatctggggcatcattttccttgcacatcacccaagggactcctgttcccaatccaacagccatatttgcagcccagtttaggtatgcat |
617 |
Q |
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|||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||| |||||||| |
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| T |
7345384 |
ctcaccactggatctggggcatcatcttccttacacatcacccaagggacacctgtacctaatccaacagccatttttgcagcccagtttgagtatgcat |
7345285 |
T |
|
| Q |
618 |
gaccagcagctcc |
630 |
Q |
| |
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|||||| |||||| |
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| T |
7345284 |
gaccagaagctcc |
7345272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 259 - 379
Target Start/End: Complemental strand, 7345704 - 7345584
Alignment:
| Q |
259 |
cttaccagccactccaagactcagtccacatgctaggcttatatggtgtatttggagagaaatcatcacagtaaaaaccattacatgaattaatctgtag |
358 |
Q |
| |
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||||||| |||||||||||||||||||| | ||||||| |||||| |||| ||||||||||||||||||||||||||||| || | ||| |||||||| |
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| T |
7345704 |
cttaccaaccactccaagactcagtccatagtttaggcttgtatggtttattgggagagaaatcatcacagtaaaaaccattgcaagcatttatctgtag |
7345605 |
T |
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| Q |
359 |
tggagaattggatggatcata |
379 |
Q |
| |
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| |||||||||||||||| |
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| T |
7345604 |
gaaaaaattggatggatcata |
7345584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 54 - 173
Target Start/End: Complemental strand, 7345930 - 7345811
Alignment:
| Q |
54 |
aaccaaccatgtagtaattcacatacgagccacccttctgaatgaaacgagcaactgcaaatgctagatcctgaactggtcgctggtgaattgggccacc |
153 |
Q |
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||||||||||||| ||||| | | ||||||||||||| || ||||||||||||||||| || || ||||||| ||||||||||||| || | | ||||| |
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| T |
7345930 |
aaccaaccatgtaataattaaaaaacgagccacccttttgtatgaaacgagcaactgcgaacgcgagatcctcaactggtcgctggggattcgatccacc |
7345831 |
T |
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| Q |
154 |
aaaatctgtaaaccttatga |
173 |
Q |
| |
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||| |||| |||||| |||| |
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| T |
7345830 |
aaattctgaaaacctgatga |
7345811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 521 - 604
Target Start/End: Original strand, 8141258 - 8141341
Alignment:
| Q |
521 |
accacaggatctggggcatcattttccttgcacatcacccaagggactcctgttcccaatccaacagccatatttgcagcccag |
604 |
Q |
| |
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||||| |||||||| ||||||| |||||||||||| | ||| || || || ||||||| | |||||||||| || ||||||||| |
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| T |
8141258 |
accactggatctggagcatcatcttccttgcacataatccatggaaccccagttcccatttcaacagccattttcgcagcccag |
8141341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 5452528 - 5452480
Alignment:
| Q |
307 |
tatttggagagaaatcatcacagtaaaaaccattacatgaattaatctg |
355 |
Q |
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||||||||||||||| |||||| || ||||||||||| | ||||||||| |
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| T |
5452528 |
tatttggagagaaataatcacaatagaaaccattacaagtattaatctg |
5452480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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