View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4533_high_24 (Length: 295)
Name: NF4533_high_24
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4533_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 4309790 - 4309509
Alignment:
| Q |
1 |
atagtttagagacaaattgatgatatatacggaagactgaaggagacaatgcttaatctgtaacttatccttnnnnnnnnnnnnnnnntactaacaacaa |
100 |
Q |
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|||||||||||||||||||||||| ||| |||||| ||||||| |||| |||||||||||||||||||||| |||||||||||| |
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| T |
4309790 |
atagtttagagacaaattgatgatctattcggaaggctgaaggggacattgcttaatctgtaacttatcctaaaaaaaaaaataataatactaacaacaa |
4309691 |
T |
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| Q |
101 |
ggaagcgccttgagtggaccgcattcagacatgcgattttcacaaacgaacaaaagagttgagttagtgcaaactgcagctacattcaatccctggtcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4309690 |
ggaagcgccttgagtggaccgcattcagacatgcgattttcacaaacgaacaaaagagttgagttagtgcaaactgcagctacattcaatccctggtcta |
4309591 |
T |
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| Q |
201 |
atctcatcgaatcaattatcttctccattgtgatcatggctgctgcagctgttggtgaagcttttctatctttattaattga |
282 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4309590 |
atctcatcgaatcaattatcttctccatcgtgatcatggctgctgcagctgttggtgaagcttttctatctttattaattga |
4309509 |
T |
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