View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4533_high_26 (Length: 281)
Name: NF4533_high_26
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4533_high_26 |
 | |
|
| [»] scaffold1416 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 262
Target Start/End: Original strand, 28300716 - 28300966
Alignment:
| Q |
12 |
atcatcaataatagtaagaaaatacttgtgattatgaacagaaattttggctatgggacccaaatatcaaagtgcaatagttcaaatttagaagaagcaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28300716 |
atcatcaataatagtaagaaaatacttgtgattatgaactgaaattttggctatgggacccaaatatcaaagtgcaatagttcaaatttagaagaagcga |
28300815 |
T |
|
| Q |
112 |
tagaggtactcaaagaatatggcaattttctttatttgacaaaatgacaaatatcacaagtagttttattatcagtagatatagtagggtacatatgatg |
211 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
28300816 |
tagaggtactcaaagaatacggcaattttctttgtttgacaaaatgacaaatatcacaagtagttttattattagtagatacagtagagtacatatgatg |
28300915 |
T |
|
| Q |
212 |
catctgagacagtctttgattagacaaatgtcttaatctaaaggtccgtat |
262 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28300916 |
catttgagacaatctttgattagacaaatgtcttaatctaaaggtccgtat |
28300966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 262
Target Start/End: Complemental strand, 28511357 - 28511107
Alignment:
| Q |
12 |
atcatcaataatagtaagaaaatacttgtgattatgaacagaaattttggctatgggacccaaatatcaaagtgcaatagttcaaatttagaagaagcaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28511357 |
atcatcaataatagtaagaaaatacttgtgattatgaactgaaattttggctatgggacccaaatatcaaagtgcaatagttcaaatttagaagaagcga |
28511258 |
T |
|
| Q |
112 |
tagaggtactcaaagaatatggcaattttctttatttgacaaaatgacaaatatcacaagtagttttattatcagtagatatagtagggtacatatgatg |
211 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
28511257 |
tagaggtactcaaagaatacggcaattttctttgtttgacaaaatgacaaatatcacaagtagttttattattagtagatacagtagagtacatatgatg |
28511158 |
T |
|
| Q |
212 |
catctgagacagtctttgattagacaaatgtcttaatctaaaggtccgtat |
262 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28511157 |
catttgagacaatctttgattagacaaatgtcttaatctaaaggtccgtat |
28511107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 70 - 254
Target Start/End: Complemental strand, 8835990 - 8835806
Alignment:
| Q |
70 |
cccaaatatcaaagtgcaatagttcaaatttagaagaagcaatagaggtactcaaagaatatggcaattttctttatttgacaaaatgacaaatatcaca |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| || |||||||||| |||| |||| |||||||| ||||| |
|
|
| T |
8835990 |
cccaaatatcaaagtgcaatagttcaaatttagatgaagcaatagaggtactcaaattataaggtaattttctttgtttggcaaagtgacaaatgtcaca |
8835891 |
T |
|
| Q |
170 |
agtagttttattatcagtagatatagtagggtacatatgatgcatctgagacagtctttgattagacaaatgtcttaatctaaag |
254 |
Q |
| |
|
|| |||||||||| ||| |||| | ||||| | ||||||| |||| |||||||||||||||||||| |||||||||| |
|
|
| T |
8835890 |
gacagctttattatcaatagtaatagcggagtacaaactatgcatcatggacaatctttgattagacaaatgtcctaatctaaag |
8835806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 70 - 254
Target Start/End: Complemental strand, 55309925 - 55309741
Alignment:
| Q |
70 |
cccaaatatcaaagtgcaatagttcaaatttagaagaagcaatagaggtactcaaagaatatggcaattttctttatttgacaaaatgacaaatatcaca |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || || |||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
55309925 |
cccaaatatcaaagtgcaatagttcaaatttagatgaagcaatagaggtactcaaattgtaaggtaattttctttgtttggcaaaatgacaaatgtcaca |
55309826 |
T |
|
| Q |
170 |
agtagttttattatcagtagatatagtagggtacatatgatgcatctgagacagtctttgattagacaaatgtcttaatctaaag |
254 |
Q |
| |
|
| |||||||||| ||| || | | ||||| | ||||||| |||| |||||||||||||||||||| |||||||||| |
|
|
| T |
55309825 |
gacaactttattatcaatagtaattgaggagtacaaactatgcatcatggacaatctttgattagacaaatgtcctaatctaaag |
55309741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 254
Target Start/End: Complemental strand, 13130560 - 13130377
Alignment:
| Q |
70 |
cccaaatatcaaagtgcaatagttcaaatttagaagaagcaatagaggtactcaaagaatatggcaattttctttatttgacaaaatgacaaatatcaca |
169 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| || || |||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
13130560 |
cccaaatatcaaaatgcaatagttcaaatttagatgaagcaataga-gtactcaaattgtagggtaattttctttgtttggcaaaatgacaaatgtcaca |
13130462 |
T |
|
| Q |
170 |
agtagttttattatcagtagatatagtagggtacatatgatgcatctgagacagtctttgattagacaaatgtcttaatctaaag |
254 |
Q |
| |
|
| || |||||||||| ||| || | | ||||| | ||||||| |||| |||||||||||||||||||| |||||||||| |
|
|
| T |
13130461 |
aacagctttattatcaatagtaattgaggagtacaaactatgcatcatggacaatctttgattagacaaatgtcctaatctaaag |
13130377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 20483930 - 20484173
Alignment:
| Q |
12 |
atcatcaataatagtaagaaaatacttgtgattatgaacagaaattttggctatgggaccc-aaatatcaaagtgcaatagttcaaatttagaagaagca |
110 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||||||| ||| |||| |||||| ||||||||| ||| | ||||||||||||||| |||| |
|
|
| T |
20483930 |
atcatcaactatagttagaaaatacttgtggccatgaacagatgtttgagctaaaggaccccaaatatcaaggtgaagaagttcaaatttagaattagca |
20484029 |
T |
|
| Q |
111 |
atagaggtactcaaagaatatggcaattttctttatttgacaaaatgacaaatatcacaagtagttttattatcagtagatatagtagggtacatatgat |
210 |
Q |
| |
|
||||| || || ||| || |||||||||| || |||||||||| | |||||||||| |||||||||| ||| |||| ||| |||| || || |
|
|
| T |
20484030 |
atagattggctggaatgataaggtaattttctttgcttagcaaaatgacataagtcacaagtagctttattatcaacagaaatagaaggatacaaattat |
20484129 |
T |
|
| Q |
211 |
gcatctgagacagtctttgattagacaaatgtcttaatctaaag |
254 |
Q |
| |
|
|||| | |||| |||||||||||||||||||| |||||||||| |
|
|
| T |
20484130 |
gcattttggacaatctttgattagacaaatgtcctaatctaaag |
20484173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 254
Target Start/End: Complemental strand, 26471893 - 26471709
Alignment:
| Q |
70 |
cccaaatatcaaagtgcaatagttcaaatttagaagaagcaatagaggtactcaaagaatatggcaattttctttatttgacaaaatgacaaatatcaca |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || || |||||||||| |||| ||||| |||||| ||||| |
|
|
| T |
26471893 |
cccaaatatcaaagtgcaatagttcaaatttagatgaagcaatagaggtactcaaattgtaaggtaattttctttgtttggtaaaataacaaatgtcaca |
26471794 |
T |
|
| Q |
170 |
agtagttttattatcagtagatatagtagggtacatatgatgcatctgagacagtctttgattagacaaatgtcttaatctaaag |
254 |
Q |
| |
|
|| |||||||||| | | || | | ||||| | ||||||| |||| |||||||||||||||||||| |||||||||| |
|
|
| T |
26471793 |
gacagctttattatcaatggtaattgaggagtacaaactatgcatcatggacaatctttgattagacaaatgtcctaatctaaag |
26471709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 254
Target Start/End: Original strand, 16991154 - 16991338
Alignment:
| Q |
70 |
cccaaatatcaaagtgcaatagttcaaatttagaagaagcaatagaggtactcaaagaatatggcaattttctttatttgacaaaatgacaaatatcaca |
169 |
Q |
| |
|
|||||||||||| ||| | ||||||||||||||| ||||||||| || || ||| || |||||||||| || |||| ||||| || ||||| |
|
|
| T |
16991154 |
cccaaatatcaaggtgaagaagttcaaatttagaattagcaatagattggctggaatgataaggtaattttctttgcttagcaaagtgacatatgtcaca |
16991253 |
T |
|
| Q |
170 |
agtagttttattatcagtagatatagtagggtacatatgatgcatctgagacagtctttgattagacaaatgtcttaatctaaag |
254 |
Q |
| |
|
||||| |||||||||| ||| |||| ||| |||| || |||||| | |||| |||||||||||||||||||| |||||||||| |
|
|
| T |
16991254 |
agtagctttattatcaacagaaatagaaggatacaaattatgcattttggacaatctttgattagacaaatgtcctaatctaaag |
16991338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 254
Target Start/End: Complemental strand, 19991026 - 19990844
Alignment:
| Q |
72 |
caaatatcaaagtgcaatagttcaaatttagaagaagcaatagaggtactcaaagaatatggcaattttctttatttgacaaaatgacaaatatcacaag |
171 |
Q |
| |
|
|||||||||||||| | || |||||| ||||| || ||||||||||| || ||||||| || |||||||| | | || |||||||| | |||||||| |
|
|
| T |
19991026 |
caaatatcaaagtgaagtaattcaaaattagatgatgcaatagaggtgctggaagaataaggtaattttctgtgtctggcaaaatgatagatatcacata |
19990927 |
T |
|
| Q |
172 |
tagttttattatcagtagatatagtagggtacatatgatgcatctgagacagtctttgattagacaaatgtcttaatctaaag |
254 |
Q |
| |
|
| | |||||||||| | | |||| ||| |||| |||||| |||||||||| ||||||||| |||||||||| ||||||||| |
|
|
| T |
19990926 |
tggatttattatcaatggtaatagcaggatacaaatgatgaatctgagacattctttgattggacaaatgtcccaatctaaag |
19990844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 254
Target Start/End: Complemental strand, 15757170 - 15756986
Alignment:
| Q |
70 |
cccaaatatcaaagtgcaatagttcaaatttagaagaagcaatagaggtactcaaagaatatggcaattttctttatttgacaaaatgacaaatatcaca |
169 |
Q |
| |
|
|||||||||||| || | || |||||| ||||||||||||||||| ||||| || ||| ||||||||||||| |||| |||||||||| |||||||| |
|
|
| T |
15757170 |
cccaaatatcaaggtagagtaattcaaaattagaagaagcaatagaagtactggaattataaggcaattttctttgtttggcaaaatgacagatatcaca |
15757071 |
T |
|
| Q |
170 |
agtagttttattatcagtagatatagtagggtacatatgatgcatctgagacagtctttgattagacaaatgtcttaatctaaag |
254 |
Q |
| |
|
| |||||||||| | ||| ||| |||| ||||||||| || |||||||||||||| |||||||||| ||||||||| |
|
|
| T |
15757070 |
tatgaatttattatcaacatgaatatcaggatacaaatgatgcatttgtgacagtctttgattggacaaatgtcccaatctaaag |
15756986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 14036775 - 14036656
Alignment:
| Q |
135 |
aattttctttatttgacaaaatgacaaatatcacaagtagttttattatcagtagatatagtagggtacatatgatgcatctgagacagtctttgattag |
234 |
Q |
| |
|
|||||||||| ||| ||||| ||||||| ||||| |||| |||||||||| ||| || | |||||||| |||||||||| |||| ||||||||||| |
|
|
| T |
14036775 |
aattttctttgtttagcaaaaggacaaatgtcacaggtagctttattatcaacagaaattgaagggtacaattgatgcatcttggacaatctttgattag |
14036676 |
T |
|
| Q |
235 |
acaaatgtcttaatctaaag |
254 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
14036675 |
acaaatgtcctaatctaaag |
14036656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 5386572 - 5386675
Alignment:
| Q |
151 |
caaaatgacaaatatcacaagtagttttattatcagtagatatagtagggtacatatgatgcatctgagacagtctttgattagacaaatgtcttaatct |
250 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||| | | |||| |||||||| ||||||||||| |||| | |||||||||||| ||| | ||| || |
|
|
| T |
5386572 |
caaaatgacaaatatcacatgtagctttattatcaacaaaaatagaagggtacaattgatgcatctgtgacaatatttgattagacatatgacctaaact |
5386671 |
T |
|
| Q |
251 |
aaag |
254 |
Q |
| |
|
|||| |
|
|
| T |
5386672 |
aaag |
5386675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 17129482 - 17129363
Alignment:
| Q |
135 |
aattttctttatttgacaaaatgacaaatatcacaagtagttttattatcagtagatatagtagggtacatatgatgcatctgagacagtctttgattag |
234 |
Q |
| |
|
|||||||||| ||| |||||||||||| ||||||| ||| |||||||||| | | || | || || || |||||||||| |||| ||||||||||| |
|
|
| T |
17129482 |
aattttctttgtttagcaaaatgacaaacatcacaaatagctttattatcaacataaattgaagagtgcaattgatgcatcttggacaatctttgattag |
17129383 |
T |
|
| Q |
235 |
acaaatgtcttaatctaaag |
254 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
17129382 |
acaaatgtcctaatctaaag |
17129363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 254
Target Start/End: Original strand, 8123574 - 8123690
Alignment:
| Q |
138 |
tttctttatttgacaaaatgacaaatatcacaagtagttttattatcagtagatatagtagggtacatatgatgcatctgagacagtctttgattagaca |
237 |
Q |
| |
|
||||||| |||| |||||| || | ||||||||||| |||||||||| ||| || | | ||||| |||||||||| ||||| |||||||||||||| |
|
|
| T |
8123574 |
tttctttgtttggaaaaatggcatacatcacaagtagctttattatcaacagaaattgaaaagtacaattgatgcatcttagacaatctttgattagaca |
8123673 |
T |
|
| Q |
238 |
aatgtcttaatctaaag |
254 |
Q |
| |
|
|||| | |||||||||| |
|
|
| T |
8123674 |
aatgccctaatctaaag |
8123690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 254
Target Start/End: Original strand, 19804701 - 19804820
Alignment:
| Q |
135 |
aattttctttatttgacaaaatgacaaatatcacaagtagttttattatcagtagatatagtagggtacatatgatgcatctgagacagtctttgattag |
234 |
Q |
| |
|
|||||||||| | || ||||||||||| ||||||||||| |||||||| | ||| || || |||| |||||||||| |||| ||||||||||| |
|
|
| T |
19804701 |
aattttctttgtatggaaaaatgacaaacatcacaagtagctttattattaacagaaattaaagagtactattgatgcatcttggacaatctttgattag |
19804800 |
T |
|
| Q |
235 |
acaaatgtcttaatctaaag |
254 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
19804801 |
ataaatgtcttaatctaaag |
19804820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 5386323 - 5386368
Alignment:
| Q |
70 |
cccaaatatcaaagtgcaatagttcaaatttagaagaagcaataga |
115 |
Q |
| |
|
|||||||||||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
5386323 |
cccaaatatcaaagtgtaataattaaaatttagaagaagcaataga |
5386368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1416 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1416
Description:
Target: scaffold1416; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 254
Target Start/End: Original strand, 1565 - 1749
Alignment:
| Q |
70 |
cccaaatatcaaagtgcaatagttcaaatttagaagaagcaatagaggtactcaaagaatatggcaattttctttatttgacaaaatgacaaatatcaca |
169 |
Q |
| |
|
|||||||||||| ||| || ||||||||||||||| ||||||||| ||| || ||| || |||||||||| || |||||||||| || ||||| |
|
|
| T |
1565 |
cccaaatatcaaggtgtaaaagttcaaatttagaactagcaatagattgactggaatgataaggtaattttctttgcttagcaaaatgacatatgtcaca |
1664 |
T |
|
| Q |
170 |
agtagttttattatcagtagatatagtagggtacatatgatgcatctgagacagtctttgattagacaaatgtcttaatctaaag |
254 |
Q |
| |
|
||||| |||||||||| ||| |||| | |||| || |||||| | |||| |||||||||||||||||||| |||||||||| |
|
|
| T |
1665 |
agtagctttattatcaacagaaatagagagatacaaattatgcattttggacaatctttgattagacaaatgtcctaatctaaag |
1749 |
T |
|
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 25124584 - 25124520
Alignment:
| Q |
156 |
tgacaaatatcacaagtagttttattatcagtagatatagtagggtacatatgatgcatctgaga |
220 |
Q |
| |
|
||||| ||||||||||||| |||||||||| ||| |||| |||||||||| |||||||||||| |
|
|
| T |
25124584 |
tgacatatatcacaagtagatttattatcacaagaaatagaagggtacatagaatgcatctgaga |
25124520 |
T |
|
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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 18476016 - 18475973
Alignment:
| Q |
70 |
cccaaatatcaaagtgcaatagttcaaatttagaagaagcaata |
113 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
18476016 |
cccaaatgtcaaagtgcagaagttcaaatttagaagaagcaata |
18475973 |
T |
|
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