View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4533_high_33 (Length: 242)

Name: NF4533_high_33
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4533_high_33
NF4533_high_33
[»] chr3 (5 HSPs)
chr3 (13-142)||(18166989-18167123)
chr3 (142-216)||(18105953-18106027)
chr3 (137-227)||(18871723-18871813)
chr3 (137-223)||(19383041-19383119)
chr3 (81-124)||(18871125-18871168)


Alignment Details
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 18167123 - 18166989
Alignment:
Q  13 caaggagacataatcttgttcttattta--------atccgattgg-aaaatattgatgggactaatactcaacaaacatttctcctgcttgagttcatt 103  Q
    ||||||||||||||||||||||||||||        |||||||||| ||||||||||||| ||| |||||    ||||||||||||||||||||||||||    
T  18167123 caaggagacataatcttgttcttatttatcggtttaatccgattgggaaaatattgatggaactgatact----aaacatttctcctgcttgagttcatt 18167028  T
Q  104 atatttgtacctttgatggaacatatatgcttattttgt 142  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  18167027 atatttgtacttttgatggaacagatatgcttattttgt 18166989  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 18106027 - 18105953
Alignment:
Q  142 tttcaagatagattctgatttattaggccttcaattgtgttatgtattgttccagtcaacttaatatgagatatg 216  Q
    |||||||||||||| |||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18106027 tttcaagatagattatgatttatcatgccttcaattgtgttctgtattgttccagtcaacttaatatgagatatg 18105953  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 18871723 - 18871813
Alignment:
Q  137 ttttgtttcaagatagattctgatttattaggccttcaattgtgttatgtattgttccagtcaacttaatatgagatatgcgcaaaatttg 227  Q
    |||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||| || ||||||||||| | |||||||||    
T  18871723 ttttgtttcaagatagattctgatttatcatgccttcaattgtgttctgtattgttcccgtcaatttgatatgagatattctcaaaatttg 18871813  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 19383119 - 19383041
Alignment:
Q  137 ttttgtttcaagatagattctgatttattaggccttcaattgtgttatgtattgttccagtcaacttaatatgagatatgcgcaaaa 223  Q
    |||||||||||||||||||||||||||| | | ||||||||||        |||||||||||||||||||||||||||||| |||||    
T  19383119 ttttgtttcaagatagattctgatttatcatgacttcaattgt--------ttgttccagtcaacttaatatgagatatgctcaaaa 19383041  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 124
Target Start/End: Original strand, 18871125 - 18871168
Alignment:
Q  81 catttctcctgcttgagttcattatatttgtacctttgatggaa 124  Q
    |||||||||| |||||||||||||||| ||||| ||||||||||    
T  18871125 catttctccttcttgagttcattatatatgtacttttgatggaa 18871168  T

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